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histone deacetylase complex subunit SAP130 isoform e [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
635-1040
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.85
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 635 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 714
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 715 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 791
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 792 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 871
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 872 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 951
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 952 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1031
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 1057866326 1032 KDRVLKLLN 1040
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247 super family
cl33720 large tegument protein UL36; Provisional
19-339
2.21e-05
large tegument protein UL36; Provisional
PHA03247 :Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 19 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 98
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 99 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 178
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 179 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 258
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 259 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 336
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 1057866326 337 MAQ 339
Cdd:PHA03247 2936 PPR 2938
Atrophin-1 super family
cl38111 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
440-821
7.30e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
pfam03154 :Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 47.07
E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 440 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 519
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 520 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 599
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 600 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 664
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 665 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 737
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 738 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 805
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 1057866326 806 V S AV PP LATNTVS P SL 821
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
635-1040
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.85
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 635 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 714
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 715 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 791
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 792 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 871
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 872 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 951
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 952 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1031
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 1057866326 1032 KDRVLKLLN 1040
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
537-886
3.05e-07
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 54.94
E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 537 P A P ISTQGIQ PA PIGT P GIQPA P L G T qgihs ATP I -- NTQGLQ P APM G TQQ P Q P ----- E G KTSAVVLADG A TIVANPI S 609
Cdd:PHA03247 2723 P G P AAARQAS PA LPAA P APPAV P A G P ----- ATP G gp ARPARP P TTA G PPA P A P paapa A G PPRRLTRPAV A SLSESRE S 2797
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 610 N P FSAA PA ATTVVQTHSQS A -- STNA PA QGSS P RP S ILRKK P AT dgmavrk TLI PP Q P PDV ---- AS P RVESSM R ST S G S 683
Cdd:PHA03247 2798 L P SPWD PA DPPAAVLAPAA A lp PAAS PA GPLP P PT S AQPTA P PP ------- PPG PP P P SLP lggs VA P GGDVRR R PP S R S 2870
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 684 P RPAG A K P KSEIHVSM A T P VT vsme TV S NQNNDQ P TIAVPPTA Q QPP P TI P TMIAAAS PP S QP AVALSTI P GAV P ITP P I 763
Cdd:PHA03247 2871 P AAKP A A P ARPPVRRL A R P AV ---- SR S TESFAL P PDQPERPP Q PQA P PP P QPQPQPP PP P QP QPPPPPP P RPQ P PLA P T 2946
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 764 T TI A A A PP PS VT V GGSLSSV L G P --- P VP EIK V KEEVEPMDI mr P V S AV PPL a T NTVSPSLALL A NN L SMPTSDL PP GA S 840
Cdd:PHA03247 2947 T DP A G A GE PS GA V PQPWLGA L V P grv A VP RFR V PQPAPSREA -- P A S ST PPL - T GHSLSRVSSW A SS L ALHEETD PP PV S 3023
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1057866326 841 prkkp R KQ QHVIS -- TE EG D MMETNST D D E K S TAKS L LVKAEKRKS P P 886
Cdd:PHA03247 3024 ----- L KQ TLWPP dd TE DS D ADSLFDS D S E R S DLEA L DPLPPEPHD P F 3066
PHA03247
PHA03247 large tegument protein UL36; Provisional
19-339
2.21e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 19 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 98
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 99 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 178
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 179 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 258
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 259 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 336
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 1057866326 337 MAQ 339
Cdd:PHA03247 2936 PPR 2938
Atrophin-1
pfam03154 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
440-821
7.30e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 47.07
E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 440 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 519
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 520 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 599
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 600 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 664
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 665 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 737
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 738 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 805
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 1057866326 806 V S AV PP LATNTVS P SL 821
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
PRK07764
PRK07764 DNA polymerase III subunits gamma and tau; Validated
250-657
2.27e-03
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain]
Cd Length: 824
Bit Score: 41.90
E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 250 R PPVTTSN A IP PA VV A TVS A TR A QSPV i TTT AA H A TDS A LSRPTLSIQH P PS A AISIQR P AQSRDVTTRITL PS H P ALGT 329
Cdd:PRK07764 383 R RLGVAGG A GA PA AA A PSA A AA A PAAA - PAP AA A A PAA A AAPAPAAAPQ P AP A PAPAPA P PSPAGNAPAGGA PS P P PAAA 461
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 330 P KQ Q LHTMAQKTIFS T GT P VA A ATV AP il A TNTI P S A TT A GSVSHTQAPTS T I ------ VTMT VP SH S SHAT A VTTSNIP 403
Cdd:PRK07764 462 P SA Q PAPAPAAAPEP T AA P AP A PPA AP -- A PAAA P A A PA A PAAPAGADDAA T L rerwpe ILAA VP KR S RKTW A ILLPEAT 539
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 404 V AK V VPQQ -- ITHTSP ---- R I - Q P DYPAE - RSS L IPIS G HRASPNP V AMETRSDNRPSV P VQFQYFL P TYP --- P S A YP 472
Cdd:PRK07764 540 V LG V RGDT lv LGFSTG glar R F a S P GNAEV l VTA L AEEL G GDWQVEA V VGPAPGAAGGEG P PAPASSG P PEE aar P A A PA 619
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 473 LA A HTYT P ITSSVSTIRQYPVS A Q AP NS A ITAQTGVG VA ST vhl NPMQLMTVDASH A RHIQGIQ P A P ISTQGIQP AP I G T 552
Cdd:PRK07764 620 AP A APAA P APAGAAAAPAEASA A P AP GV A APEHHPKH VA VP --- DASDGGDGWPAK A GGAAPAA P P P APAPAAPA AP A G A 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 553 PGI QPAP LGTQGIHSATPINTQGLQ P APMGTQQPQPEGKTSA V V L ADGAT iv AN P ISNPFS A A P AATTVVQTHSQS A STN 632
Cdd:PRK07764 697 APA QPAP APAATPPAGQADDPAAQP P QAAQGASAPSPAADDP V P L PPEPD -- DP P DPAGAP A Q P PPPPAPAPAAAP A AAP 774
410 420
....*....|....*....|....*
gi 1057866326 633 A P AQG S SPRPSILRKK P AT D GMAV R 657
Cdd:PRK07764 775 P P SPP S EEEEMAEDDA P SM D DEDR R 799
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
635-1040
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.85
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 635 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 714
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 715 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 791
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 792 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 871
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 872 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 951
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 952 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1031
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 1057866326 1032 KDRVLKLLN 1040
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
537-886
3.05e-07
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 54.94
E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 537 P A P ISTQGIQ PA PIGT P GIQPA P L G T qgihs ATP I -- NTQGLQ P APM G TQQ P Q P ----- E G KTSAVVLADG A TIVANPI S 609
Cdd:PHA03247 2723 P G P AAARQAS PA LPAA P APPAV P A G P ----- ATP G gp ARPARP P TTA G PPA P A P paapa A G PPRRLTRPAV A SLSESRE S 2797
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 610 N P FSAA PA ATTVVQTHSQS A -- STNA PA QGSS P RP S ILRKK P AT dgmavrk TLI PP Q P PDV ---- AS P RVESSM R ST S G S 683
Cdd:PHA03247 2798 L P SPWD PA DPPAAVLAPAA A lp PAAS PA GPLP P PT S AQPTA P PP ------- PPG PP P P SLP lggs VA P GGDVRR R PP S R S 2870
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 684 P RPAG A K P KSEIHVSM A T P VT vsme TV S NQNNDQ P TIAVPPTA Q QPP P TI P TMIAAAS PP S QP AVALSTI P GAV P ITP P I 763
Cdd:PHA03247 2871 P AAKP A A P ARPPVRRL A R P AV ---- SR S TESFAL P PDQPERPP Q PQA P PP P QPQPQPP PP P QP QPPPPPP P RPQ P PLA P T 2946
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 764 T TI A A A PP PS VT V GGSLSSV L G P --- P VP EIK V KEEVEPMDI mr P V S AV PPL a T NTVSPSLALL A NN L SMPTSDL PP GA S 840
Cdd:PHA03247 2947 T DP A G A GE PS GA V PQPWLGA L V P grv A VP RFR V PQPAPSREA -- P A S ST PPL - T GHSLSRVSSW A SS L ALHEETD PP PV S 3023
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1057866326 841 prkkp R KQ QHVIS -- TE EG D MMETNST D D E K S TAKS L LVKAEKRKS P P 886
Cdd:PHA03247 3024 ----- L KQ TLWPP dd TE DS D ADSLFDS D S E R S DLEA L DPLPPEPHD P F 3066
PHA03247
PHA03247 large tegument protein UL36; Provisional
627-845
3.76e-06
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 51.48
E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 627 QSASTNA P AQGSS P R P SILRKK PA TD --- GMAVRKTLI P PQ P P D VAS P RVE S SM R STSGSP R P A G A KPKSEIHVSM A TPV 703
Cdd:PHA03247 2611 PAPPSPL P PDTHA P D P PPPSPS PA AN epd PHPPPTVPP P ER P R D DPA P GRV S RP R RARRLG R A A Q A SSPPQRPRRR A ARP 2690
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 704 TV SME T VSNQNNDQ P ------------ TIAV PP TAQQPPPTI P TMI AA AS PP SQ PA VALSTIPG A V P IT PP I T TIAA AP - 770
Cdd:PHA03247 2691 TV GSL T SLADPPPP P ptpepaphalvs ATPL PP GPAAARQAS P ALP AA PA PP AV PA GPATPGGP A R P AR PP T T AGPP AP a 2770
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057866326 771 PP SVTVG G SLSSVLG P P V PEIKVKE E VE P MDIMRPVSAVPP LA TNTVS P SL A LL A NN L SM PTS DL P PGAS P RKK P 845
Cdd:PHA03247 2771 PP AAPAA G PPRRLTR P A V ASLSESR E SL P SPWDPADPPAAV LA PAAAL P PA A SP A GP L PP PTS AQ P TAPP P PPG P 2845
PHA03247
PHA03247 large tegument protein UL36; Provisional
19-339
2.21e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 19 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 98
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 99 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 178
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 179 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 258
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 259 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 336
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 1057866326 337 MAQ 339
Cdd:PHA03247 2936 PPR 2938
Atrophin-1
pfam03154 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
440-821
7.30e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 47.07
E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 440 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 519
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 520 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 599
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 600 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 664
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 665 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 737
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 738 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 805
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 1057866326 806 V S AV PP LATNTVS P SL 821
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
PHA03247
PHA03247 large tegument protein UL36; Provisional
98-492
1.26e-04
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 46.47
E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 98 PP AH L T PA --------- VP LSFSEGLMKP P PKPTMPS RP I AP APPSTLSL P PKVP G QVTVTMES S - I P QASAI P VATISG 167
Cdd:PHA03247 2551 PP PP L P PA appaapdrs VP PPRPAPRPSE P AVTSRAR RP D AP PQSARPRA P VDDR G DPRGPAPP S p L P PDTHA P DPPPPS 2630
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 168 QQGHPSNLHHIMTTN V QMSIIRSNA P G P P ------------ LHIG AS HL P RGAAAA A VMSS - SKV T TVLR P TSQL P NAAT 234
Cdd:PHA03247 2631 PSPAANEPDPHPPPT V PPPERPRDD P A P G rvsrprrarrlg RAAQ AS SP P QRPRRR A ARPT v GSL T SLAD P PPPP P TPEP 2710
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 235 A QP A VQHIIHQ P IQSRPPVTT S N A I P P A VVATVSATRAQS P V - ITTT A AHA T DSALSR P TLSIQHPPSAAISIQ RPA QSR 313
Cdd:PHA03247 2711 A PH A LVSATPL P PGPAAARQA S P A L P A A PAPPAVPAGPAT P G g PARP A RPP T TAGPPA P APPAAPAAGPPRRLT RPA VAS 2790
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 314 DVTT R IT LPS ------ H PA LGTPKQQLHTM A QKTIFSTGT P VA A ATV AP ILATNTI P SATTA G SVSHTQAP tsti V TMTV 387
Cdd:PHA03247 2791 LSES R ES LPS pwdpad P PA AVLAPAAALPP A ASPAGPLPP P TS A QPT AP PPPPGPP P PSLPL G GSVAPGGD ---- V RRRP 2866
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 388 PS H S SH A TAVTTSNI PV AKV vpqqithts P R IQPDYPA E RSS L I P ISGH R ASPNPVAMETRSDNR P SV P V Q F Q YFL P TY P 467
Cdd:PHA03247 2867 PS R S PA A KPAAPARP PV RRL --------- A R PAVSRST E SFA L P P DQPE R PPQPQAPPPPQPQPQ P PP P P Q P Q PPP P PP P 2937
410 420
....*....|....*....|....*
gi 1057866326 468 PSAY PLA AH T YTPITSSV S TIRQY P 492
Cdd:PHA03247 2938 RPQP PLA PT T DPAGAGEP S GAVPQ P 2962
PRK07764
PRK07764 DNA polymerase III subunits gamma and tau; Validated
250-657
2.27e-03
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain]
Cd Length: 824
Bit Score: 41.90
E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 250 R PPVTTSN A IP PA VV A TVS A TR A QSPV i TTT AA H A TDS A LSRPTLSIQH P PS A AISIQR P AQSRDVTTRITL PS H P ALGT 329
Cdd:PRK07764 383 R RLGVAGG A GA PA AA A PSA A AA A PAAA - PAP AA A A PAA A AAPAPAAAPQ P AP A PAPAPA P PSPAGNAPAGGA PS P P PAAA 461
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 330 P KQ Q LHTMAQKTIFS T GT P VA A ATV AP il A TNTI P S A TT A GSVSHTQAPTS T I ------ VTMT VP SH S SHAT A VTTSNIP 403
Cdd:PRK07764 462 P SA Q PAPAPAAAPEP T AA P AP A PPA AP -- A PAAA P A A PA A PAAPAGADDAA T L rerwpe ILAA VP KR S RKTW A ILLPEAT 539
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 404 V AK V VPQQ -- ITHTSP ---- R I - Q P DYPAE - RSS L IPIS G HRASPNP V AMETRSDNRPSV P VQFQYFL P TYP --- P S A YP 472
Cdd:PRK07764 540 V LG V RGDT lv LGFSTG glar R F a S P GNAEV l VTA L AEEL G GDWQVEA V VGPAPGAAGGEG P PAPASSG P PEE aar P A A PA 619
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 473 LA A HTYT P ITSSVSTIRQYPVS A Q AP NS A ITAQTGVG VA ST vhl NPMQLMTVDASH A RHIQGIQ P A P ISTQGIQP AP I G T 552
Cdd:PRK07764 620 AP A APAA P APAGAAAAPAEASA A P AP GV A APEHHPKH VA VP --- DASDGGDGWPAK A GGAAPAA P P P APAPAAPA AP A G A 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 553 PGI QPAP LGTQGIHSATPINTQGLQ P APMGTQQPQPEGKTSA V V L ADGAT iv AN P ISNPFS A A P AATTVVQTHSQS A STN 632
Cdd:PRK07764 697 APA QPAP APAATPPAGQADDPAAQP P QAAQGASAPSPAADDP V P L PPEPD -- DP P DPAGAP A Q P PPPPAPAPAAAP A AAP 774
410 420
....*....|....*....|....*
gi 1057866326 633 A P AQG S SPRPSILRKK P AT D GMAV R 657
Cdd:PRK07764 775 P P SPP S EEEEMAEDDA P SM D DEDR R 799
PTZ00449
PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
630-864
3.59e-03
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain]
Cd Length: 943
Bit Score: 41.60
E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 630 S TNA P AQGS SP RPSI L RKK P ATDGMAVRKT -- LI PP Q P PDVA SP RVESSMRSTSGSPR P AGA KP ------ K SEIHVSMAT 701
Cdd:PTZ00449 602 S AQR P TRPK SP KLPE L LDI P KSPKRPESPK sp KR PP P P QRPS SP ERPEGPKIIKSPKP P KSP KP pfdpkf K EKFYDDYLD 681
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 702 PVTV S M ET VSNQNN D QPTIAVPPTAQQPP P TI P TMIAAAS PP SQ P AVALS tipgav P IT P PITTI A AA P PP svtvggsl S 781
Cdd:PTZ00449 682 AAAK S K ET KTTVVL D ESFESILKETLPET P GT P FTTPRPL PP KL P RDEEF ------ P FE P IGDPD A EQ P DD -------- I 747
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 782 SVLG PP VP E - IKVK E --- EVEPM DI MRPVSAVPPLATN T VS P SL A LLANNLSMPTS D L PPG --- AS P R K KP R KQQHVI ST 854
Cdd:PTZ00449 748 EFFT PP EE E r TFFH E tpa DTPLP DI LAEEFKEEDIHAE T GE P DE A MKRPDSPSEHE D K PPG dhp SL P K K RH R LDGLAL ST 827
250
....*....|
gi 1057866326 855 EE gdm M E TNS 864
Cdd:PTZ00449 828 TD --- L E SDA 834
PRK07003
PRK07003 DNA polymerase III subunit gamma/tau;
556-779
7.27e-03
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain]
Cd Length: 830
Bit Score: 40.22
E-value: 7.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 556 Q PA PL G TQGIHSAT P INTQ G LQ PAP mgtqqpqpegkts AVVL A DGATIV A N P ISNPFSA A PA A TTVVQTHSQS A S T N A P A 635
Cdd:PRK07003 359 E PA VT G GGAPGGGV P ARVA G AV PAP ------------- GARA A AAVGAS A V P AVTAVTG A AG A ALAPKAAAAA A A T R A E A 425
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057866326 636 QGSS P R P silrkk PAT DGMAVRKTLIPPQP P DV A SP R VESSM R STSGSPR P A g A KPK S EIHVSMAT P VTVSM E tvsnqnn 715
Cdd:PRK07003 426 PPAA P A P ------ PAT ADRGDDAADGDAPV P AK A NA R ASADS R CDERDAQ P P - A DSG S ASAPASDA P PDAAF E ------- 491
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1057866326 716 DQ P TI A V P PT A QQPPPTIPTMI AAAS PPSQ PA V A LSTI P G A V P I TP pitti AAA P P PSVTV G GS 779
Cdd:PRK07003 492 PA P RA A A P SA A TPAAVPDARAP AAAS REDA PA A A APPA P E A R P P TP ----- AAA A P AARAG G AA 550
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
