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Conserved domains on  [gi|1057458004|gb|AOE23905|]
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NADH dehydrogenase subunit F, partial (chloroplast) [Halesia diptera]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhF super family cl33324
NADH dehydrogenase subunit 5
 1-330 0e+00

NADH dehydrogenase subunit 5


The actual alignment was detected with superfamily member CHL00025:

Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 594.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:CHL00025  331 MLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPP 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  81 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLNVHFQNYSGKKSTPFYLISLWGKGGSKTINKs 160
Cdd:CHL00025  411 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINK- 489

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 161 vrLLNLLRMNSNESTSFFSKKIYRIDENVRKMTQPlfTITHFGNMNTYSYPYESDNTMLFPLLVLVLFTLFVGYIGIPFN 240
Cdd:CHL00025  490 --LLLLLTMNNNERVSFFSKKTYKIDGNVRNMIRS--FITIFGNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFN 565

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 241 QEGMDLDILSKWLTPSINLLHQNSKNSLDWYEFLKDAIFSVSIAYFGIFIALFLYKPIYSSLQNLDLINSFVKIGSKRII 320
Cdd:CHL00025  566 QEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIF 645

                         330
                  ....*....|
gi 1057458004 321 CDKIINVIYD 330
Cdd:CHL00025  646 LDKIINVIYN 655
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-330 0e+00

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 594.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:CHL00025  331 MLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPP 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  81 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLNVHFQNYSGKKSTPFYLISLWGKGGSKTINKs 160
Cdd:CHL00025  411 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINK- 489

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 161 vrLLNLLRMNSNESTSFFSKKIYRIDENVRKMTQPlfTITHFGNMNTYSYPYESDNTMLFPLLVLVLFTLFVGYIGIPFN 240
Cdd:CHL00025  490 --LLLLLTMNNNERVSFFSKKTYKIDGNVRNMIRS--FITIFGNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFN 565

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 241 QEGMDLDILSKWLTPSINLLHQNSKNSLDWYEFLKDAIFSVSIAYFGIFIALFLYKPIYSSLQNLDLINSFVKIGSKRII 320
Cdd:CHL00025  566 QEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIF 645

                         330
                  ....*....|
gi 1057458004 321 CDKIINVIYD 330
Cdd:CHL00025  646 LDKIINVIYN 655
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 118-330 1.03e-125

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 359.62  E-value: 1.03e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 118 RIYFLTFEGHLNVHFQNYSGKKSTPFYLISLWGKGGSKTINKSVRLLNLLRMNSNESTSFFSKKIYRIDENVRKMTQPLF 197
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFSKKTYRIDGNVRNMTRPFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 198 TITHFGNMNTYSYPYESDNTMLFPLLVLVLFTLFVGYIGIPFNQEGMDLDILSKWLTPSINLLHQNSKNSLDWYEFLKDA 277
Cdd:pfam01010  81 TITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTNA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1057458004 278 IFSVSIAYFGIFIALFLYKPIYSSLQNLDLINSFVKIGSKRIICDKIINVIYD 330
Cdd:pfam01010 161 IFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYN 213
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-126 9.42e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.09  E-value: 9.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:COG1009   315 FLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT---------RDIRKMGGLRKKMPITAITFLIGALSLAGIPP 385

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1057458004  81 LACFWSKDEILNDSW---LYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:COG1009   386 FAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLFFLVFFG 434
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 2-148 9.88e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 136.26  E-value: 9.88e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMEtvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPL 81
Cdd:TIGR01974 318 LALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMH--------HEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGF 389

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1057458004  82 ACFWSKDEILNDSW--LYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHlNVHFQNYSGKKSTPFYLISL 148
Cdd:TIGR01974 390 AGFFSKDLILEAAFasGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGK-ERHEADAHPHESPLVMLLPL 457
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-330 0e+00

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 594.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:CHL00025  331 MLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPP 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  81 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLNVHFQNYSGKKSTPFYLISLWGKGGSKTINKs 160
Cdd:CHL00025  411 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINK- 489

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 161 vrLLNLLRMNSNESTSFFSKKIYRIDENVRKMTQPlfTITHFGNMNTYSYPYESDNTMLFPLLVLVLFTLFVGYIGIPFN 240
Cdd:CHL00025  490 --LLLLLTMNNNERVSFFSKKTYKIDGNVRNMIRS--FITIFGNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFN 565

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 241 QEGMDLDILSKWLTPSINLLHQNSKNSLDWYEFLKDAIFSVSIAYFGIFIALFLYKPIYSSLQNLDLINSFVKIGSKRII 320
Cdd:CHL00025  566 QEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIF 645

                         330
                  ....*....|
gi 1057458004 321 CDKIINVIYD 330
Cdd:CHL00025  646 LDKIINVIYN 655
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 118-330 1.03e-125

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 359.62  E-value: 1.03e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 118 RIYFLTFEGHLNVHFQNYSGKKSTPFYLISLWGKGGSKTINKSVRLLNLLRMNSNESTSFFSKKIYRIDENVRKMTQPLF 197
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFSKKTYRIDGNVRNMTRPFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004 198 TITHFGNMNTYSYPYESDNTMLFPLLVLVLFTLFVGYIGIPFNQEGMDLDILSKWLTPSINLLHQNSKNSLDWYEFLKDA 277
Cdd:pfam01010  81 TITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTNA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1057458004 278 IFSVSIAYFGIFIALFLYKPIYSSLQNLDLINSFVKIGSKRIICDKIINVIYD 330
Cdd:pfam01010 161 IFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYN 213
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-126 2.26e-61

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 207.18  E-value: 2.26e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:PRK07376  331 VMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVVGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPP 410

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1057458004  81 LACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK07376  411 FAGFWSKDEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTFEG 456
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-126 9.42e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.09  E-value: 9.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:COG1009   315 FLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT---------RDIRKMGGLRKKMPITAITFLIGALSLAGIPP 385

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1057458004  81 LACFWSKDEILNDSW---LYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:COG1009   386 FAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLFFLVFFG 434
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-126 9.10e-44

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 158.78  E-value: 9.10e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:PRK06590  321 FLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAM--------HHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPP 392

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1057458004  81 LACFWSKDEILNDSWLYSPIFA-IIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK06590  393 FAGFFSKDEILEAAFANGHINLfVAGLVGAFLTAFYSFRLIFLVFHG 439
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 2-148 9.88e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 136.26  E-value: 9.88e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMEtvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPL 81
Cdd:TIGR01974 318 LALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMH--------HEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGF 389

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1057458004  82 ACFWSKDEILNDSW--LYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHlNVHFQNYSGKKSTPFYLISL 148
Cdd:TIGR01974 390 AGFFSKDLILEAAFasGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGK-ERHEADAHPHESPLVMLLPL 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-110 8.10e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 8.10e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMG---SYRTALFHLITHAYSKALLFLGSGSVIHSMEtvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCG 77
Cdd:pfam00361 187 LIALGAGtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRV--------HTRNIRDYGGLAKTMPILALVFLVAMLSLAG 258

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1057458004  78 IPPLACFWSKDEILNDSWLYSPIFAIIAWSTAG 110
Cdd:pfam00361 259 LPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-146 2.53e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 97.22  E-value: 2.53e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00151  280 MFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSS--------SGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPF 351

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1057458004  81 LACFWSKDEILN---DSWLYSPIFAIIAWSTaGLTAFYMFRIYFLTFEGHLNVHFqnYSGKKSTPFYLI 146
Cdd:MTH00151  352 LSGFYSKDLILEsslMSPTSLLMVLLMFVGV-GLTALYSARLSFCLVWGSMKSSS--LSSKSDEDFYVS 417
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 2-124 1.62e-21

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 95.14  E-value: 1.62e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPL 81
Cdd:MTH00020  315 VACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHAL--------SDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYL 386

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1057458004  82 ACFWSKDEILNDSWL-YSPIFAI-IAWSTAGLTAFYMFRIYFLTF 124
Cdd:MTH00020  387 TGFYSKDLILELAFGqYYLIFAYwLGCFSALLTAFYSIRLIYLTF 431
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-129 1.67e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 95.07  E-value: 1.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPL 81
Cdd:MTH00210  316 MVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAV--------SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYL 387

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1057458004  82 ACFWSKDEILNDSW-LYSPIFAI-IAWSTAGLTAFYMFRIYFLTFEGHLN 129
Cdd:MTH00210  388 TGFYSKDLILELTYdKYYIAFAYwLGSFSALLTAFYSIRLIYLTFITNTN 437
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 2-126 3.42e-21

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 94.21  E-value: 3.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSYRTALFHLITHAYSKALLFLGSGSVIhsMETVvgyspdkSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPL 81
Cdd:PRK07390  325 IAVGLQQPDIALLLLLTHAIAKALLFMSVGSII--LTTI-------TQDLTELGGLWSRMPATTLAFLVGSAGLVALLPL 395

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1057458004  82 ACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK07390  396 GGFWALLRLADGLWAVSPWLVGVLLLVNALTAFNLTRVFRLVFLG 440
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-140 2.13e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 91.74  E-value: 2.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00165  283 MSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNM--------SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPF 354

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1057458004  81 LACFWSKD---EILNDSWLYSPIFAIIAWSTaGLTAFYMFRIYFLTFEGHLNVHFQNYSGKKS 140
Cdd:MTH00165  355 LSGFYSKDlilEMVSMSNLNFFIFFLFFFST-GLTVSYSFRLIYYSMSGDFNLKSLNNLSDES 416
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-124 7.14e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 90.42  E-value: 7.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00208  340 VVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSL--------NNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPF 411

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1057458004  81 LACFWSKDEIL-----NDSWLYSPIFAIIAwstAGLTAFYMFRIYFLTF 124
Cdd:MTH00208  412 LAGFYSKDLILeaglaSISNLLSIILALIA---TLLTAVYSFRIIFFCF 457
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-130 1.09e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 89.63  E-value: 1.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00211  308 MVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL--------NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPF 379

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1057458004  81 LACFWSKDEIL---NDSWLYS--PIFAIIAwstAGLTAFYMFRIYFLTFEGHLNV 130
Cdd:MTH00211  380 LSGFFSKDLILesmNGSYLNAwaLLLTLLA---TSLTAAYSFRLIFLSLGGYPRF 431
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-118 2.21e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 88.67  E-value: 2.21e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMEtvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00207  283 MASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHH--------HSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPF 354

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1057458004  81 LACFWSKDEILnDSWLYSP---IFAIIAWSTAGLTAFYMFR 118
Cdd:MTH00207  355 LSGFYSKDLIL-ESSLFYPhnsLMILMIFLATALTAAYSTR 394
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-123 6.95e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.74  E-value: 6.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYR---TALFHLITHAYSKALLFLGSGSVIHSMetvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCG 77
Cdd:COG0651   312 LLGLGLGTPLglaGALFHLLNHALAKALLFLAAGAIERAT---------GTRDLDKLGGLGKRMPLTAAAFLIGALALAG 382

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1057458004  78 IPPLACFWSKDEILN---DSWLYSPIFAIIAwsTAGLTAFYMFRIYFLT 123
Cdd:COG0651   383 LPPLSGFVSKWLLLQaalEAGAWLLAAVLLL--SSLLTLAYFVRIFGRA 429
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-126 2.03e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 85.79  E-value: 2.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGS---YRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCG 77
Cdd:PRK12667  335 FMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAA---------GTRDIDELAGLGRKMPIASFAFLIGALSLVG 405

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1057458004  78 IPPLACFWSKdEILNDSWLYS--PIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK12667  406 IPPLNGFFSK-LLLFNALLESgfYLPALVLLIASAISLVGYFRAWYSLFFG 455
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-127 9.34e-18

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 84.06  E-value: 9.34e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKiSFL-LGTLSLCGIP 79
Cdd:MTH00004  313 MVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNL--------NNEQDIRKMGGLQKTLPITS-SCLtIGNLALMGTP 383

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1057458004  80 PLACFWSKD---EILNDSWLYSPIFAIIAWSTAgLTAFYMFRIYFLTFEGH 127
Cdd:MTH00004  384 FLSGFYSKDtiiETLNTSYLNAWALLLTLLATS-FTAAYSLRMILLVQTGF 433
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-129 1.79e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 83.16  E-value: 1.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMEtvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00209  279 MCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHG--------HSQDIRMVGNLWYQMPITSICLNIANLSLCGIPF 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1057458004  81 LACFWSKDEILnDSWLYS--PIFAIIAWSTA-GLTAFYMFRIYFLTFEGHLN 129
Cdd:MTH00209  351 LAGFYSKDLIL-ESMLESnmPIMTLILMFLStSLTAAYSMRLSYFSLWGPNS 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-126 3.16e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 79.37  E-value: 3.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   5 GMGSYRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACF 84
Cdd:PRK08376  346 GEIALAGGIYHIVNHALYKALLFLTAGAVIYETGT---------RNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGF 416

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1057458004  85 WSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK08376  417 ASKWLIYESSALFNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-127 6.67e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 78.41  E-value: 6.67e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00066  311 MVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSL--------NDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPF 382

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1057458004  81 LACFWSKDEI---LNDSWL--YSPIFAIIAWStagLTAFYMFRIYFLTFEGH 127
Cdd:MTH00066  383 LAGFFSKDAIieaMNTSNLnsWALILTLIATS---FTAVYSFRIIYFSSMKF 431
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-127 9.38e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 77.95  E-value: 9.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00137  319 MVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSL--------NDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPF 390

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1057458004  81 LACFWSKDEI---LNDSWL--YSPIFAIIAWStagLTAFYMFRIYFLTFEGH 127
Cdd:MTH00137  391 LAGFFSKDAIieaLNTSHLnaWALTLTLIATS---FTAVYSLRVVFFVSMGH 439
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-126 1.10e-15

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 77.62  E-value: 1.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK06521  341 ALYHLLNHALFKSLLFLGAGAVLHATGT---------RDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLL 411

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1057458004  92 --------NDSWLYS---PIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK06521  412 qsllsspgLPQWGLKlavPIAAAMLALTAALAAMCFVKFYGITFLG 457
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-127 1.55e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 74.12  E-value: 1.55e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00108  314 MVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNL--------NDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPF 385

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1057458004  81 LACFWSKD---EILNDSwlYSPIFA----IIAWStagLTAFYMFRIYFLTFEGH 127
Cdd:MTH00108  386 LTGFYSKDliiEAANTS--YTNAWAllitLIATS---LTAAYSTRIIFFALLGQ 434
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 7-91 1.60e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 74.22  E-value: 1.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   7 GSYRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWS 86
Cdd:MTH00032  336 GSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTV-------DEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYS 408


                  ....*
gi 1057458004  87 KDEIL 91
Cdd:MTH00032  409 KDLIL 413
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-149 8.72e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 65.67  E-value: 8.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVihsmetVVGYspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK08375  325 GLLHLLHHALMKGALFLAAGAI------EVTY---GTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLV 395

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1057458004  92 ---NDSWLYSPIFAIIAWSTagLTAFYMFRI-YFLTFEGHLNVhfQNYSGKKSTPFYLISLW 149
Cdd:PRK08375  396 vgaVEAGQWLVLAVLLASSL--LALLYFLRIwYRAFFGPPPPG--SEAPKQEAPLGMLAPSL 453
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-91 8.65e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 59.40  E-value: 8.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGS---YRTALFHLITHAYSKALLFLGSGSVIHSMetvvgyspdKSQNMVLMGGLTKHVPITKISFLLGTLSLCGI 78
Cdd:PRK08377  314 LALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITL---------GGTEIEKFEGLGKRMPLTALALTIGALSTVGI 384

                          90
                  ....*....|...
gi 1057458004  79 PPLACFWSKDEIL 91
Cdd:PRK08377  385 PLFNVFWSKFRII 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-87 2.57e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 58.20  E-value: 2.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGmgsyrTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:PRK08667  329 LLALG-----GALFHSLNHALFKSLLFLTAGSVVHATGT---------RNIEKMGGLVKLMPYTSALFLVGAVSIAALPP 394


                  ....*..
gi 1057458004  81 LACFWSK 87
Cdd:PRK08667  395 FNGFASE 401
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-87 4.93e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 4.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMG---SYRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCG 77
Cdd:PRK08668  312 LVGLGLGtslGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGT---------TKISEMGGLIEKMPFTFAMYLVAIISLAG 382

                          90
                  ....*....|
gi 1057458004  78 IPPLACFWSK 87
Cdd:PRK08668  383 IPPMSGFASK 392
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-145 1.03e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 56.36  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   8 SYRTALFHLITHAYSKALLFLGSGSVihsmetvvgYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSK 87
Cdd:PRK06589  330 ALGAAILHLVSHSFAKICLFYSMGSI---------YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISK 400

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1057458004  88 DEIL-----NDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLNvhfQNYSGKKSTPFYL 145
Cdd:PRK06589  401 FLILlaaseQNQPWLSIIVMLVVIASSILSALYLLKILSSIYKPSLS---ENSFITKSLPYLM 460
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 2-104 3.22e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 54.60  E-value: 3.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGSY--RTAL----FHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSL 75
Cdd:PRK06525  313 FGLSLAILgsRLALegsiAYIFNHAFAKSLFFLVAGALSYSCGT---------RLLPRLRGVLKKLPLVGVGFCVAALAI 383

                          90       100
                  ....*....|....*....|....*....
gi 1057458004  76 CGIPPLACFWSKDEILNDSWLYSPIFAII 104
Cdd:PRK06525  384 TGVPPFNGFFSKFPIFAAGFELSVEYWIL 412
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-86 5.26e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.17  E-value: 5.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   2 LALGMGS---YRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGI 78
Cdd:PRK06458  322 FALGIGGplgIFAALLHMLNHSLTKSAIFFASGNVLQKYGT---------RDINVIRGLLKVSPLTGWGLMLGALAIAGM 392


                  ....*...
gi 1057458004  79 PPLACFWS 86
Cdd:PRK06458  393 PPFGVFIS 400
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-126 2.41e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 52.14  E-value: 2.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSyrtALFHLITHAYSKALLFLGSGSVIHSmetvVGYspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:PRK08042  302 LIALGLVG---GLYHLLNHSLFKSVLFLGAGSVWFR----TGH-----RDIEKLGGIGKKMPVISIAMLVGLMAMAALPP 369

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1057458004  81 LACFWSKDEI------LNDSWLY-----SPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK08042  370 LNGFAGEWVIyqsffkLSNSGAFvarllGPLLAVGLAITGALAVMCMAKVYGVTFLG 426
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 11-127 4.69e-07

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 51.46  E-value: 4.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  11 TALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEI 90
Cdd:PRK12645  340 AAIFHLINHATFKGSLFMIVGIVDHETGT---------RDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMF 410

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1057458004  91 LN-------------DSWLYspIFAIIAWSTAGLTAFYMFRIYFLTFEGH 127
Cdd:PRK12645  411 FEsmlnateanlfslDTWGV--LFPVIAWVASVFTFVYSIIFIFKTFFGK 458
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-122 8.19e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.69  E-value: 8.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLaLGMGS---YRTALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCG 77
Cdd:PRK12647  300 ML-LGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHETGT---------RDITKLGGLRRAMPITAAAALLAALSMAG 369

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1057458004  78 IPPLACFWSKDEILnDSWLYSPIFAIIAWSTAGLTAFYMFRIYFL 122
Cdd:PRK12647  370 LPPLFGFLAKELIY-EALLEAPLWSLILTVAAVLGNALMVAVAFL 413
PRK12646 PRK12646
DUF4040 family protein;
12-129 9.63e-07

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 50.52  E-value: 9.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKD--- 88
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHEAGT---------RDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEmfl 412

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1057458004  89 -------EILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLN 129
Cdd:PRK12646  413 daltqtgQLSQFSLISMIIIVFIGVIASIFTFTYALYMVKEVFWGKYD 460
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 12-88 1.00e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 50.21  E-value: 1.00e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKD 88
Cdd:PRK12649  336 ATFHLLNHATFKACLFLVAGIVAHEAAT---------RDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKE 403
PRK12650 PRK12650
DUF4040 family protein;
12-124 2.40e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.27  E-value: 2.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGT---------RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGML 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1057458004  92 nDSWLYSPIFAIIAW---STAGLTAFYMF----RIYFLTF 124
Cdd:PRK12650  397 -TAFLEAPGGNAGVVlllVGAALGAVFTFaysaRLVLGAF 435
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 12-129 1.20e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHSMETvvgyspdksQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK05846  331 AIFQMISHGLSSAALFLLVGVLYDRLHT---------RDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1057458004  92 NDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEGHLN 129
Cdd:PRK05846  402 LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVK 439
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-126 2.52e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.71  E-value: 2.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHsmetVVGYSPDKSqnmvlMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK07691  329 AIYYLIHDMIVKAALFLLIGIMIK----ITGTTDLKK-----MGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIV 399

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1057458004  92 NDSWLY-SPIFAIIAWSTAGLTAFYMFRIYFLTFEG 126
Cdd:PRK07691  400 EGTFEAgFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
12-124 2.57e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.71  E-value: 2.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVIHsmetVVGYSPDKSqnmvlMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSKDEIL 91
Cdd:PRK12663  326 AIFYLVHDMVVKTALFLIAGSLVR----LTGYRSLQY-----LGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1057458004  92 -----NDSWlyspIFAIIAWSTAGLTAFYMFRIYFLTF 124
Cdd:PRK12663  397 qgaldNGAY----ILLALMLITSLITMYSLFRIFFLAY 430
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
15-87 9.02e-05

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 44.12  E-value: 9.02e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1057458004  15 HLITHAYSKALLFLGSGSVIHsmetVVGYSpdksqNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSK 87
Cdd:PRK12668  297 HAFNHILYKGLLFMSAGAVLY----RTGTE-----KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSK 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
12-87 9.90e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.87  E-value: 9.90e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1057458004  12 ALFHLITHAYSKALLFLGSGSVihsmetvvgYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSK 87
Cdd:PRK06277  320 GIFHAINHVIYKSALFLGAGIV---------SYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSK 386
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-119 7.38e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.96  E-value: 7.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKallfLGSGSVIHSMETVVGYSPDKSQnmvlMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:PRK05777  313 LAAGTAEGYSAVLFYLLAYLFMT----LGAFGVISLLRRKGGEAESISD----FAGLSKRSPLLAAVMTIFMLSLAGIPP 384

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1057458004  81 LACFWSKDEIL------NDSWLyspifAIIAWSTAGLTAFYMFRI 119
Cdd:PRK05777  385 TAGFWGKFYVFeaaveaGLWWL-----AVIGVLNSAIGAFYYLRV 424
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-124 1.51e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   3 ALGMGSyrtALFHLITHAYSKALLFLGSGSVihsmETVVGyspdkSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLA 82
Cdd:PRK12665  321 VAGLSG---AIYYVAHHITVQTTLFLVVGLI----ERQAG-----SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFS 388

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1057458004  83 CFWSKDEIL-----NDSWLyspIFAIIAWS--TAGLTAFYMFRIYFLTF 124
Cdd:PRK12665  389 GFIGKVALLeagaeDGTWL---AWALVAGGvvTSLLTLYAVARVWTKAF 434
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-119 1.54e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 40.10  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLgsgsVIhsmeTVVGYSPDKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:COG1007   312 LAAGTPLGVSAALFYLLAYLFMNLGAFA----VI----LLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPP 383

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1057458004  81 LACFWSKDEILNDS------WLyspifAIIAWSTAGLTAFYMFRI 119
Cdd:COG1007   384 TAGFFGKFYVFSAAveaglyWL-----AVIAVLNSVISAYYYLRV 423
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 6-57 7.33e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 38.09  E-value: 7.33e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1057458004   6 MGSYRTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGL 57
Cdd:PRK08601  311 LGAYSAAIIHLILHGLFKATLFLQSGSAVPRFNIVKQANEKKSYLWIVVGRV 362
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-124 9.76e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 37.59  E-value: 9.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057458004   1 MLALGMGSYRTALFHLITHAYSKALLFLGSGSVIHSMetvvgYSpdkSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPP 80
Cdd:MTH00095  267 MLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSN-----FG---QQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMF 338

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1057458004  81 LACFWSKDEILNDSWL--YSPIFAIIAWSTAGLTAFYMFRIYFLTF 124
Cdd:MTH00095  339 TSGMVSKELILELFFFnnYMIFFSLMFFFSVFLTFGYSYRLWKSFF 384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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