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Conserved domains on  [gi|1051361351|gb|AOA60194|]
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VP2 [Trichodysplasia spinulosa-associated polyomavirus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Polyoma_coat2 super family cl28444
Polyomavirus coat protein;
2-310 2.74e-101

Polyomavirus coat protein;


The actual alignment was detected with superfamily member pfam00761:

Pssm-ID: 391818  Cd Length: 322  Bit Score: 299.83  E-value: 2.74e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351   2 GGVISLFFDIIEISTELSAATGFAVDAVLAGEAAAAVEVEVMGLMTVEG-LSASEALGTLGLTMENFSLMHALPGMLsea 80
Cdd:pfam00761   1 GAALSLLGDLIAEVSELAAATGFSVEAILAGEAFAAIEVQIASLATVEGvTSTSEALAAIGLTPQAFAVLQAAPTAL--- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351  81 VGIGTLFQTISGASGLVAAGIRY--GYAREVSIVNRNI-SQMALQVWRPWDYYDILFPGVQTFAHYLNVLD--HWASSLI 155
Cdd:pfam00761  78 AGFAALIQTVSGGSAIAASGYRFfgDWDHKVPTVGLYQqPNMALQPWRPDDYYDILFPGVETFSNFVHYLDprHWGPSLF 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 156 HTVSRYVWDAIlHEGRHQIghASRELMIRGTNHFQDLMARLIENSRWVLTTGPSNIYSHLESYYRDLPGISPPQARDLYR 235
Cdd:pfam00761 158 NAVGQAIWHLM-REDIPQI--TSRELARRTTRSFSDTLARFLENARWTVTNLPVNLYSGLQDYYSELPPINPIQVRQVAR 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 236 RLQEKI------------PDRYQLEAATDE-------SAEVIETYSAPGGAHQRVCPDWMLPLVLGLYGDITPTFGYYlr 296
Cdd:pfam00761 235 REGTYVnfghsypesiddADSIQEVTQRKElggpqvqSGEYIEKYTAPGGANQRVAPDWMLPLLLGLYGDLTPAWEAY-- 312
                         330
                  ....*....|....
gi 1051361351 297 eeerEDGPQKKRRR 310
Cdd:pfam00761 313 ----EDGPEKKERE 322
 
Name Accession Description Interval E-value
Polyoma_coat2 pfam00761
Polyomavirus coat protein;
2-310 2.74e-101

Polyomavirus coat protein;


Pssm-ID: 366290  Cd Length: 322  Bit Score: 299.83  E-value: 2.74e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351   2 GGVISLFFDIIEISTELSAATGFAVDAVLAGEAAAAVEVEVMGLMTVEG-LSASEALGTLGLTMENFSLMHALPGMLsea 80
Cdd:pfam00761   1 GAALSLLGDLIAEVSELAAATGFSVEAILAGEAFAAIEVQIASLATVEGvTSTSEALAAIGLTPQAFAVLQAAPTAL--- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351  81 VGIGTLFQTISGASGLVAAGIRY--GYAREVSIVNRNI-SQMALQVWRPWDYYDILFPGVQTFAHYLNVLD--HWASSLI 155
Cdd:pfam00761  78 AGFAALIQTVSGGSAIAASGYRFfgDWDHKVPTVGLYQqPNMALQPWRPDDYYDILFPGVETFSNFVHYLDprHWGPSLF 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 156 HTVSRYVWDAIlHEGRHQIghASRELMIRGTNHFQDLMARLIENSRWVLTTGPSNIYSHLESYYRDLPGISPPQARDLYR 235
Cdd:pfam00761 158 NAVGQAIWHLM-REDIPQI--TSRELARRTTRSFSDTLARFLENARWTVTNLPVNLYSGLQDYYSELPPINPIQVRQVAR 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 236 RLQEKI------------PDRYQLEAATDE-------SAEVIETYSAPGGAHQRVCPDWMLPLVLGLYGDITPTFGYYlr 296
Cdd:pfam00761 235 REGTYVnfghsypesiddADSIQEVTQRKElggpqvqSGEYIEKYTAPGGANQRVAPDWMLPLLLGLYGDLTPAWEAY-- 312
                         330
                  ....*....|....
gi 1051361351 297 eeerEDGPQKKRRR 310
Cdd:pfam00761 313 ----EDGPEKKERE 322
PHA02620 PHA02620
VP3; Provisional
1-311 2.03e-73

VP3; Provisional


Pssm-ID: 177439  Cd Length: 353  Bit Score: 229.90  E-value: 2.03e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351   1 MGGVISLFFDIIEISTELSAATGFAVDAVLAGEAAAAVEVEVMGLMTVEGLSASEALGTLGLTMENFSLMHALPGMLSea 80
Cdd:PHA02620    1 MGAALALLGDLVATVSEAAAATGFSVAEIAAGEAAAAIEVQIASLATVEGITSTEAIAAIGLTPQTYAVITGAPGAIA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351  81 vGIGTLFQTISGASGLVAAGIRY--GYAREVSIVNRN-ISQMALQVWRPWDYYDILFPGVQTFAHYLNVLD--HWASSLI 155
Cdd:PHA02620   79 -GFAALVQTVSGVSSVAQVGYKFfsDWDHKVSTVGLYqQPGMALELFNPEDYYDILFPGVNTFVNNIQYLDprHWGPTLF 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 156 HTVSRYVWDAIlhegRHQIGH-ASRELMIRGTNHFQDLMARLIENSRWVLTTGPSNIYSHLESYYRDLPGISPPQARDLY 234
Cdd:PHA02620  158 SAISQAFWHLV----RDDLPRlTSQEIERRTQRFFRDSLARFLEETTWTIVNAPINLYNSIQDYYSALSPIRPSMVRQVA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 235 RR----------LQEKIPDRYQLEAATD-----------ESAEVIETYSAPGGAHQRVCPDWMLPLVLGLYGDITPTFGY 293
Cdd:PHA02620  234 ERegtqvsfghsYSQSIDDADSIEEVTQrldlrnqepnvHSGEFIEKTIAPGGANQRTAPQWMLPLLLGLYGTVTPALEA 313
                         330
                  ....*....|....*...
gi 1051361351 294 YlreeerEDGPQKKRRRM 311
Cdd:PHA02620  314 Y------EDGPNKKKRRM 325
 
Name Accession Description Interval E-value
Polyoma_coat2 pfam00761
Polyomavirus coat protein;
2-310 2.74e-101

Polyomavirus coat protein;


Pssm-ID: 366290  Cd Length: 322  Bit Score: 299.83  E-value: 2.74e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351   2 GGVISLFFDIIEISTELSAATGFAVDAVLAGEAAAAVEVEVMGLMTVEG-LSASEALGTLGLTMENFSLMHALPGMLsea 80
Cdd:pfam00761   1 GAALSLLGDLIAEVSELAAATGFSVEAILAGEAFAAIEVQIASLATVEGvTSTSEALAAIGLTPQAFAVLQAAPTAL--- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351  81 VGIGTLFQTISGASGLVAAGIRY--GYAREVSIVNRNI-SQMALQVWRPWDYYDILFPGVQTFAHYLNVLD--HWASSLI 155
Cdd:pfam00761  78 AGFAALIQTVSGGSAIAASGYRFfgDWDHKVPTVGLYQqPNMALQPWRPDDYYDILFPGVETFSNFVHYLDprHWGPSLF 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 156 HTVSRYVWDAIlHEGRHQIghASRELMIRGTNHFQDLMARLIENSRWVLTTGPSNIYSHLESYYRDLPGISPPQARDLYR 235
Cdd:pfam00761 158 NAVGQAIWHLM-REDIPQI--TSRELARRTTRSFSDTLARFLENARWTVTNLPVNLYSGLQDYYSELPPINPIQVRQVAR 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 236 RLQEKI------------PDRYQLEAATDE-------SAEVIETYSAPGGAHQRVCPDWMLPLVLGLYGDITPTFGYYlr 296
Cdd:pfam00761 235 REGTYVnfghsypesiddADSIQEVTQRKElggpqvqSGEYIEKYTAPGGANQRVAPDWMLPLLLGLYGDLTPAWEAY-- 312
                         330
                  ....*....|....
gi 1051361351 297 eeerEDGPQKKRRR 310
Cdd:pfam00761 313 ----EDGPEKKERE 322
PHA02620 PHA02620
VP3; Provisional
1-311 2.03e-73

VP3; Provisional


Pssm-ID: 177439  Cd Length: 353  Bit Score: 229.90  E-value: 2.03e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351   1 MGGVISLFFDIIEISTELSAATGFAVDAVLAGEAAAAVEVEVMGLMTVEGLSASEALGTLGLTMENFSLMHALPGMLSea 80
Cdd:PHA02620    1 MGAALALLGDLVATVSEAAAATGFSVAEIAAGEAAAAIEVQIASLATVEGITSTEAIAAIGLTPQTYAVITGAPGAIA-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351  81 vGIGTLFQTISGASGLVAAGIRY--GYAREVSIVNRN-ISQMALQVWRPWDYYDILFPGVQTFAHYLNVLD--HWASSLI 155
Cdd:PHA02620   79 -GFAALVQTVSGVSSVAQVGYKFfsDWDHKVSTVGLYqQPGMALELFNPEDYYDILFPGVNTFVNNIQYLDprHWGPTLF 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 156 HTVSRYVWDAIlhegRHQIGH-ASRELMIRGTNHFQDLMARLIENSRWVLTTGPSNIYSHLESYYRDLPGISPPQARDLY 234
Cdd:PHA02620  158 SAISQAFWHLV----RDDLPRlTSQEIERRTQRFFRDSLARFLEETTWTIVNAPINLYNSIQDYYSALSPIRPSMVRQVA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051361351 235 RR----------LQEKIPDRYQLEAATD-----------ESAEVIETYSAPGGAHQRVCPDWMLPLVLGLYGDITPTFGY 293
Cdd:PHA02620  234 ERegtqvsfghsYSQSIDDADSIEEVTQrldlrnqepnvHSGEFIEKTIAPGGANQRTAPQWMLPLLLGLYGTVTPALEA 313
                         330
                  ....*....|....*...
gi 1051361351 294 YlreeerEDGPQKKRRRM 311
Cdd:PHA02620  314 Y------EDGPNKKKRRM 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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