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Conserved domains on  [gi|1050380836|gb|OCT83032|]
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hypothetical protein XELAEV_18025568mg [Xenopus laevis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
110-218 1.34e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 80.73  E-value: 1.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 110 DQANEKKVEAINALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYK 184
Cdd:COG4785    66 ALALPDLAQLYYERGvaydsLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1050380836 185 WRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTL 218
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 4-43 2.59e-15

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


:

Pssm-ID: 271228  Cd Length: 41  Bit Score: 69.11  E-value: 2.59e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1050380836   4 RKVRELQEFVRLCQSNPDILHCPEFKFFADWLISMGASVP 43
Cdd:cd14438     2 EKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
STI1 smart00727
Heat shock chaperonin-binding motif;
329-368 3.27e-10

Heat shock chaperonin-binding motif;


:

Pssm-ID: 128966  Cd Length: 41  Bit Score: 54.97  E-value: 3.27e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1050380836  329 DPEVLAAMQDPEVMAAFQDVAQNPANISKY-QNNPKVMNLI 368
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
DBINO super family cl16460
DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator ...
 220-269 6.12e-03

DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator SNF2L1 proteins and chromatin re-modelling proteins.


The actual alignment was detected with superfamily member pfam13892:

Pssm-ID: 464024 [Multi-domain]  Cd Length: 134  Bit Score: 36.75  E-value: 6.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1050380836 220 KEVQPRANKIAE----HRRKYERkrEEREINERKErlkkaKEENERAQREEEAR 269
Cdd:pfam13892  58 KDPQLRAKRLMRemllFWKKNEK--EERELRKRAE-----KEALEQAKKEEELR 104
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
110-218 1.34e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 80.73  E-value: 1.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 110 DQANEKKVEAINALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYK 184
Cdd:COG4785    66 ALALPDLAQLYYERGvaydsLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1050380836 185 WRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTL 218
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 4-43 2.59e-15

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 69.11  E-value: 2.59e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1050380836   4 RKVRELQEFVRLCQSNPDILHCPEFKFFADWLISMGASVP 43
Cdd:cd14438     2 EKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 2-43 3.24e-14

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 66.15  E-value: 3.24e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1050380836   2 DQRKVRELQEFVRLCQSNPDILHCPEFKFFADWLISMGASVP 43
Cdd:pfam18253   1 DPAHLSLLKQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
STI1 smart00727
Heat shock chaperonin-binding motif;
329-368 3.27e-10

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 54.97  E-value: 3.27e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1050380836  329 DPEVLAAMQDPEVMAAFQDVAQNPANISKY-QNNPKVMNLI 368
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 326-371 3.94e-09

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 52.18  E-value: 3.94e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1050380836 326 ILSDPEVLAAMQDPEVMAAFQDVAQNPANISKYQNNPKVMNLITKL 371
Cdd:pfam17830   8 LAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 112-231 2.62e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 55.18  E-value: 2.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 112 ANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHR 191
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1050380836 192 LLGHWEDSAHDLAIACKLDYDEDAST-LLKEVQPRankIAE 231
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTkLIKECDEK---IAE 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 99-238 5.46e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 54.60  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836  99 DESVEVTEEMMDQANEKKVEAI--NALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDR 171
Cdd:TIGR00990 311 EEAARAFEKALDLGKLGEKEAIalNLRGtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1050380836 172 AIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTL-LKEVQPRANKIAEHRRKYER 238
Cdd:TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIqLGVTQYKEGSIASSMATFRR 458
TPR_1 pfam00515
Tetratricopeptide repeat;
146-178 1.31e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.31e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1050380836 146 AILYAKRASVYVKLQKPNAAIRDCDRAIAINPD 178
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
DBINO pfam13892
DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator ...
 220-269 6.12e-03

DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator SNF2L1 proteins and chromatin re-modelling proteins.


Pssm-ID: 464024 [Multi-domain]  Cd Length: 134  Bit Score: 36.75  E-value: 6.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1050380836 220 KEVQPRANKIAE----HRRKYERkrEEREINERKErlkkaKEENERAQREEEAR 269
Cdd:pfam13892  58 KDPQLRAKRLMRemllFWKKNEK--EERELRKRAE-----KEALEQAKKEEELR 104
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 146-178 8.55e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.55e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1050380836  146 AILYAKRASVYVKLQKPNAAIRDCDRAIAINPD 178
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
110-218 1.34e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 80.73  E-value: 1.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 110 DQANEKKVEAINALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYK 184
Cdd:COG4785    66 ALALPDLAQLYYERGvaydsLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1050380836 185 WRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTL 218
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
118-272 9.35e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.90  E-value: 9.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 118 EAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRL 192
Cdd:COG0457    43 EALYNLGLaylrlGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 193 LGHWEDSAHDLAIACKLDYD-EDASTLLKEVQPRANKIAEHRRKYERKREEREINERKERLKKAKEENERAQREEEARHQ 271
Cdd:COG0457   123 LGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202


                  .
gi 1050380836 272 A 272
Cdd:COG0457   203 L 203
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 4-43 2.59e-15

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 69.11  E-value: 2.59e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1050380836   4 RKVRELQEFVRLCQSNPDILHCPEFKFFADWLISMGASVP 43
Cdd:cd14438     2 EKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
111-212 1.74e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 72.35  E-value: 1.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKW 185
Cdd:COG0457     2 ELDPDDAEAYNNLGLayrrlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                          90       100
                  ....*....|....*....|....*..
gi 1050380836 186 RGKAHRLLGHWEDSAHDLAIACKLDYD 212
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPD 108
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 2-43 3.24e-14

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 66.15  E-value: 3.24e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1050380836   2 DQRKVRELQEFVRLCQSNPDILHCPEFKFFADWLISMGASVP 43
Cdd:pfam18253   1 DPAHLSLLKQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
106-275 6.62e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.81  E-value: 6.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 106 EEMMDQA---NEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINP 177
Cdd:COG0457    62 LADYEQAlelDPDDAEALNNLGLalqalGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 178 DSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTLLKEVQPRANKIAEHRRKYERKREEREINERKERLKKAKE 257
Cdd:COG0457   142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                         170
                  ....*....|....*...
gi 1050380836 258 ENERAQREEEARHQAGEQ 275
Cdd:COG0457   222 LLLLALALLLALRLAALA 239
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 111-210 7.80e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 7.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKW 185
Cdd:COG3914   106 ALNPDNAEALFNLGNlllalGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185

                          90       100
                  ....*....|....*....|....*
gi 1050380836 186 RGKAHRLLGHWEDSAHDLAIACKLD 210
Cdd:COG3914   186 LGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 109-238 1.62e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 109 MDQANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGK 188
Cdd:COG3914    75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1050380836 189 AHRLLGHWEDSAHDLAIACKLDYDE-DASTLLKEVQPRANKIAEHRRKYER 238
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNaEALNNLGNALQDLGRLEEAIAAYRR 205
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 111-238 1.78e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 1.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAH 190
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1050380836 191 RLLGHWEDSAHDLAIACKLD-YDEDASTLLKEVQPRANKIAEHRRKYER 238
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEK 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 111-213 2.43e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.28  E-value: 2.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKW 185
Cdd:COG4783    32 ELDPDNPEAFALLGEillqlGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR 111

                          90       100
                  ....*....|....*....|....*...
gi 1050380836 186 RGKAHRLLGHWEDSAHDLAIACKLDYDE 213
Cdd:COG4783   112 LARAYRALGRPDEAIAALEKALELDPDD 139
STI1 smart00727
Heat shock chaperonin-binding motif;
329-368 3.27e-10

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 54.97  E-value: 3.27e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1050380836  329 DPEVLAAMQDPEVMAAFQDVAQNPANISKY-QNNPKVMNLI 368
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
126-212 2.32e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.02  E-value: 2.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 126 GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRdCDRAIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAI 205
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1050380836 206 ACKLDYD 212
Cdd:COG3063    85 ALELDPS 91
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 326-371 3.94e-09

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 52.18  E-value: 3.94e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1050380836 326 ILSDPEVLAAMQDPEVMAAFQDVAQNPANISKYQNNPKVMNLITKL 371
Cdd:pfam17830   8 LAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 119-238 6.09e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 6.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 119 AINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWED 198
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1050380836 199 SAHDLAIACKLDYDEDASTLLKEVQPRANKIAEHRRKYER 238
Cdd:COG2956   231 ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
139-212 9.40e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 9.40e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1050380836 139 IKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLDYD 212
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 111-198 1.50e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKW 185
Cdd:COG4235    11 AANPNDAEGWLLLGRaylrlGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                          90
                  ....*....|...
gi 1050380836 186 RGKAHRLLGHWED 198
Cdd:COG4235    91 LGLAAFQQGDYAE 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 109-210 1.69e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 1.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 109 MDQANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGK 188
Cdd:COG5010    51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAA 130

                          90       100
                  ....*....|....*....|..
gi 1050380836 189 AHRLLGHWEDSAHDLAIACKLD 210
Cdd:COG5010   131 LLLSLGQDDEAKAALQRALGTS 152
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-238 2.04e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 2.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836  99 DESVEVTEEMMDQaNEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAI 173
Cdd:COG2956    59 DRAIRIHQKLLER-DPDRAEALLELAQdylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1050380836 174 AINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLD-YDEDASTLLKEVQPRANKIAEHRRKYER 238
Cdd:COG2956   138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDpDCARALLLLAELYLEQGDYEEAIAALER 203
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 112-231 2.62e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 55.18  E-value: 2.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 112 ANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHR 191
Cdd:PLN03088    2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1050380836 192 LLGHWEDSAHDLAIACKLDYDEDAST-LLKEVQPRankIAE 231
Cdd:PLN03088   82 KLEEYQTAKAALEKGASLAPGDSRFTkLIKECDEK---IAE 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 117-265 4.41e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 4.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 117 VEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHW 196
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 197 EDSAHDLAIACKLD-YDEDASTLLKEVqprankiaehrrkYERKREEREINERKERLKKAKEENERAQRE 265
Cdd:COG2956    93 DRAEELLEKLLELDpDDAEALRLLAEI-------------YEQEGDWEKAIEVLERLLKLGPENAHAYCE 149
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 99-238 5.46e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 54.60  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836  99 DESVEVTEEMMDQANEKKVEAI--NALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDR 171
Cdd:TIGR00990 311 EEAARAFEKALDLGKLGEKEAIalNLRGtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1050380836 172 AIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTL-LKEVQPRANKIAEHRRKYER 238
Cdd:TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIqLGVTQYKEGSIASSMATFRR 458
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 117-234 2.00e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 117 VEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHR 191
Cdd:COG3914   146 AEAYLNLGEalrrlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1050380836 192 LLGHWEDSAHDLAIACKLDYDEDASTLLK----EVQPRANKIAEHRR 234
Cdd:COG3914   226 QACDWEVYDRFEELLAALARGPSELSPFAllylPDDDPAELLALARA 272
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 36-235 6.22e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.06  E-value: 6.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836  36 ISMGASVPAPTNKEPPTHTKKETPVKEERTPSPPPKPESEESDIEID-----NEGVVPGDDD-EPQEmgDESVEVTEEMM 109
Cdd:TIGR00990  46 VATGAGVVYYQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKstapkNAPVEPADELpEIDE--SSVANLSEEER 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 110 DQANEKKVEAIN-ALGEGELEKAIELFTEAIKLNPRiAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGK 188
Cdd:TIGR00990 124 KKYAAKLKEKGNkAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1050380836 189 AHRLLGHWEDSAHDLAIACKLDYDEDASTlLKEVQPRANKIAEHRRK 235
Cdd:TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAK 248
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
111-181 6.18e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 6.18e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1050380836 111 QANEKKVEAINALG-----EGELEKAIElFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQ 181
Cdd:COG3063    20 ELDPDNADALNNLGlllleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
111-247 6.34e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 6.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDsAQPYKW 185
Cdd:COG0457   104 ELDPDDAEALYNLGLallelGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAA 182

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1050380836 186 RGKAHRLLGHWEDSAHDLAIACKLDYDEDASTLLKEVQPRANKIAEHRRKYERKREEREINE 247
Cdd:COG0457   183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 122-238 1.04e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 122 ALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWEDSAH 201
Cdd:COG5010    30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1050380836 202 DLAIACKLD-YDEDASTLLKEVQPRANKIAEHRRKYER 238
Cdd:COG5010   110 YYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQR 147
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 130-213 1.25e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 130 KAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKL 209
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....
gi 1050380836 210 DYDE 213
Cdd:COG4235    81 DPDN 84
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 111-177 2.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.50e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1050380836 111 QANEKKVEAINALG-----EGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINP 177
Cdd:COG5010    82 QLDPNNPELYYNLAllysrSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
155-238 3.03e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 155 VYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWEDsAHDLAIACKLDYDE-DASTLLKEVQPRANKIAEHR 233
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLDPNNaEALLNLAELLLELGDYDEAL 79


                  ....*
gi 1050380836 234 RKYER 238
Cdd:COG3063    80 AYLER 84
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 106-212 3.89e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 3.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050380836 106 EEMMDQANEKKVEAINALGEGELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQPYKW 185
Cdd:COG3914    38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFN 117

                          90       100
                  ....*....|....*....|....*..
gi 1050380836 186 RGKAHRLLGHWEDSAHDLAIACKLDYD 212
Cdd:COG3914   118 LGNLLLALGRLEEALAALRRALALNPD 144
TPR_1 pfam00515
Tetratricopeptide repeat;
146-178 1.31e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.31e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1050380836 146 AILYAKRASVYVKLQKPNAAIRDCDRAIAINPD 178
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_11 pfam13414
TPR repeat;
155-194 2.22e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 2.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1050380836 155 VYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLG 194
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
126-160 2.26e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 2.26e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1050380836 126 GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQ 160
Cdd:pfam13414   8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 111-181 2.89e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 2.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1050380836 111 QANEKKVEAINALGE-----GELEKAIELFTEAIKLNPRIAILYAKRASVYVKLQKPNAAIRDCDRAIAINPDSAQ 181
Cdd:COG4235    45 RLDPDNADALLDLAEallaaGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
DBINO pfam13892
DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator ...
 220-269 6.12e-03

DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator SNF2L1 proteins and chromatin re-modelling proteins.


Pssm-ID: 464024 [Multi-domain]  Cd Length: 134  Bit Score: 36.75  E-value: 6.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1050380836 220 KEVQPRANKIAE----HRRKYERkrEEREINERKErlkkaKEENERAQREEEAR 269
Cdd:pfam13892  58 KDPQLRAKRLMRemllFWKKNEK--EERELRKRAE-----KEALEQAKKEEELR 104
TPR_9 pfam13371
Tetratricopeptide repeat;
154-221 6.52e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 35.27  E-value: 6.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1050380836 154 SVYVKLQKPNAAIRDCDRAIAINPDSAQPYKWRGKAHRLLGHWEDSAHDLAIACKLDYDEDASTLLKE 221
Cdd:pfam13371   3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRE 70
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 146-178 8.55e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.55e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1050380836  146 AILYAKRASVYVKLQKPNAAIRDCDRAIAINPD 178
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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