|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1149 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1909.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 1 MTPNKKKHKNYESHKSFQRREDHERHHFRKVHNFHLNDNEILSPTKGGIKLDVNKLSIESFPRTPRKEEQKKKERLLPKY 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRETNKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKKKKNLNLPDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 81 DQIQNNTVDFYIPLNERSETPKKNQTTVTTTIKTNNQKKH----------SFDSSSSSFFSSPYSTYSCISESSSSVHSP 150
Cdd:PTZ00112 81 NQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKANKKEKHnldssssssiSSSLTNISFFSSPTSIYSCLSNSLSSKHSP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 151 SVVHEPQVTHVIISSDTSPREVERGSKILNKQTGVTHTQSYDRMRRSPRNHSTGKYSTSKSSTSKSSTDKNNYDEDAEGS 230
Cdd:PTZ00112 161 KVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 231 KQKKRNTEKTKVDHSNDDVRILRSVTKENslrskgeqKKDEKRVVSGTRSSVLLKRKSQCLWKDSYVYQNFFKKAKTGVP 310
Cdd:PTZ00112 241 KQTKRNSEKSKVQNSHFDVRILRSYTKEN--------KKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 311 SQARHSHNGSSTSDEDDDSESTGLGSSRPSTRSSSSPQKKRQTIKDTLTHKQIQRETPTHAQKKNAPLRHAATINKRSSM 390
Cdd:PTZ00112 313 KNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRSSM 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 391 LPVNEERGGIKKESTEELKEFTIEEVAKLTKDTCIKLVENNSCQYEDGVIYESLFINQVEYTIGDDVLLVCTGGGEFNAG 470
Cdd:PTZ00112 393 LPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFCTGNGNTYNG 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 471 TSGintTNQSSKNKNKQRNGYQLRKGKISSFYKNQATNQVEAEVCIYIDQHDAPYIKHLCEKQKSRRAKADFEVFLDDET 550
Cdd:PTZ00112 473 KSG---TKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDDT 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 551 KNFYLLGNINFKILNAKMILKKINVYNEKSLYDEDKTRKQGKDKFLCTQYLKEREERICEIQNSEHWDNLVLGSSDLYYS 630
Cdd:PTZ00112 550 KNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYYS 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 631 FSNNKKSSKNKSLKLIIEKMKENEGGGTKNKSHKSKIGPSNTATSSAKKDQSRNKTNGSTPKQSSQKNP----------- 699
Cdd:PTZ00112 630 FSNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSKTKNDHNKSKTSKNKEPsstsflqdvkk 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 700 -----KVDIKDFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILYISGM 774
Cdd:PTZ00112 710 ksdphNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGM 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 775 PGTGKTATVYSVIQLLQHKTKQKLLPNFNVFEINGMNVVHPNAAYQVLYKQMFNKKPPNALNSFKMLDRLFNQNKKDTRN 854
Cdd:PTZ00112 790 PGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRN 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 855 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERL 934
Cdd:PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERL 949
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 935 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENRRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCI 1014
Cdd:PTZ00112 950 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCL 1029
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 1015 IVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNTELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEMLLGFNES 1094
Cdd:PTZ00112 1030 IVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFNES 1109
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|....*
gi 1047805970 1095 SKKNASEGTKSSRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1149
Cdd:PTZ00112 1110 SKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
736-1068 |
2.28e-37 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 145.38 E-value: 2.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 736 DVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPnFNVFEINGMNVvhp 815
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGVD-VRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 816 NAAYQVLYkQMFNK-----KPPNALNSF-KMLDRLFNQNKKDTRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKI-NSK 887
Cdd:COG1474 97 STRYRVLS-RILEElgsgeDIPSTGLSTdELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGAR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 888 LVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQ 965
Cdd:COG1474 175 VGVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAID 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 966 ICRKAFEN--RRGQKIV-PRDITEATNQLFDSPLTNAINYLPWPFKMFLtCIIVELRMLNDFIIPYKKVLNRYKVLVETS 1042
Cdd:COG1474 255 LLRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEEL 333
|
330 340
....*....|....*....|....*.
gi 1047805970 1043 GkyIGMCSNTELFKImLDKLVKMGIL 1068
Cdd:COG1474 334 G--VDPLSYRRVRDY-LSELEMLGLI 356
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
732-1043 |
1.33e-30 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 124.67 E-value: 1.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 732 MMQLDVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLpNFNVFEINGMN 811
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 812 VvhpNAAYQVLYK-----QMFNKKPPNALNSF-KMLDRLFNQNkkDTRNVSILII-DEIDYLITKTQKVLFTLfdwpTKI 884
Cdd:TIGR02928 85 L---DTLYQVLVElanqlRGSGEEVPTTGLSTsEVFRRLYKEL--NERGDSLIIVlDEIDYLVGDDDDLLYQL----SRA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 885 -------NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVAN 955
Cdd:TIGR02928 156 rsngdldNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 956 VSGDIRKALQICRKAFEN--RRGQKIVPRD-ITEATNQLFDSPLTNAINYLPWPFKMFLTCIIvELRMLNDFIIPYKKVL 1032
Cdd:TIGR02928 236 EHGDARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIA-NLAANDEDPFRTGEVY 314
|
330
....*....|.
gi 1047805970 1033 NRYKVLVETSG 1043
Cdd:TIGR02928 315 EVYKEVCEDIG 325
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
769-915 |
2.30e-14 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 71.09 E-value: 2.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 769 LYISGMPGTGKTATVYSVIQLLqhktkqkllpNFNVFEINGMNVVhpnaayqvlykqmfnkkPPNALNSFKMLDRLFNQN 848
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1047805970 849 KKDtrNVSILIIDEIDYLITK-----------TQKVLFTLFDWPTKINSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 915
Cdd:pfam00004 54 KKL--APCVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
743-914 |
3.31e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 59.85 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 743 PCREKEIKEVhafleSGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHktkqkllPNFNVFEINGMNVvhpnaaYQVL 822
Cdd:cd00009 1 VGQEEAIEAL-----REALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDL------LEGL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 823 YKQMFNKkppnalnsFKMLDRLFNQNKKdtRNVSILIIDEIDYLITKTQKVLFTLFD---WPTKINSKLVLIAISNTM-- 897
Cdd:cd00009 63 VVAELFG--------HFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNALLRVLEtlnDLRIDRENVRVIGATNRPll 132
|
170
....*....|....*...
gi 1047805970 898 -DLPERLIPRCRSRLAFG 914
Cdd:cd00009 133 gDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
765-910 |
4.04e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 765 SNQILYISGMPGTGKTATVYSVIQLLQhktkqklLPNFNVFEINGMNVVHPNAAYQVLYKQMFNKKPPNALNSFKMLDRL 844
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1047805970 845 FNQNKKDtrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSR 910
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1149 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1909.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 1 MTPNKKKHKNYESHKSFQRREDHERHHFRKVHNFHLNDNEILSPTKGGIKLDVNKLSIESFPRTPRKEEQKKKERLLPKY 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRETNKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKKKKNLNLPDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 81 DQIQNNTVDFYIPLNERSETPKKNQTTVTTTIKTNNQKKH----------SFDSSSSSFFSSPYSTYSCISESSSSVHSP 150
Cdd:PTZ00112 81 NQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKANKKEKHnldssssssiSSSLTNISFFSSPTSIYSCLSNSLSSKHSP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 151 SVVHEPQVTHVIISSDTSPREVERGSKILNKQTGVTHTQSYDRMRRSPRNHSTGKYSTSKSSTSKSSTDKNNYDEDAEGS 230
Cdd:PTZ00112 161 KVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 231 KQKKRNTEKTKVDHSNDDVRILRSVTKENslrskgeqKKDEKRVVSGTRSSVLLKRKSQCLWKDSYVYQNFFKKAKTGVP 310
Cdd:PTZ00112 241 KQTKRNSEKSKVQNSHFDVRILRSYTKEN--------KKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 311 SQARHSHNGSSTSDEDDDSESTGLGSSRPSTRSSSSPQKKRQTIKDTLTHKQIQRETPTHAQKKNAPLRHAATINKRSSM 390
Cdd:PTZ00112 313 KNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRSSM 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 391 LPVNEERGGIKKESTEELKEFTIEEVAKLTKDTCIKLVENNSCQYEDGVIYESLFINQVEYTIGDDVLLVCTGGGEFNAG 470
Cdd:PTZ00112 393 LPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFCTGNGNTYNG 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 471 TSGintTNQSSKNKNKQRNGYQLRKGKISSFYKNQATNQVEAEVCIYIDQHDAPYIKHLCEKQKSRRAKADFEVFLDDET 550
Cdd:PTZ00112 473 KSG---TKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDDT 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 551 KNFYLLGNINFKILNAKMILKKINVYNEKSLYDEDKTRKQGKDKFLCTQYLKEREERICEIQNSEHWDNLVLGSSDLYYS 630
Cdd:PTZ00112 550 KNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYYS 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 631 FSNNKKSSKNKSLKLIIEKMKENEGGGTKNKSHKSKIGPSNTATSSAKKDQSRNKTNGSTPKQSSQKNP----------- 699
Cdd:PTZ00112 630 FSNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSKTKNDHNKSKTSKNKEPsstsflqdvkk 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 700 -----KVDIKDFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILYISGM 774
Cdd:PTZ00112 710 ksdphNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGM 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 775 PGTGKTATVYSVIQLLQHKTKQKLLPNFNVFEINGMNVVHPNAAYQVLYKQMFNKKPPNALNSFKMLDRLFNQNKKDTRN 854
Cdd:PTZ00112 790 PGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRN 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 855 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERL 934
Cdd:PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERL 949
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 935 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENRRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCI 1014
Cdd:PTZ00112 950 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCL 1029
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 1015 IVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNTELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEMLLGFNES 1094
Cdd:PTZ00112 1030 IVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFNES 1109
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|....*
gi 1047805970 1095 SKKNASEGTKSSRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1149
Cdd:PTZ00112 1110 SKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
736-1068 |
2.28e-37 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 145.38 E-value: 2.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 736 DVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLPnFNVFEINGMNVvhp 815
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGVD-VRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 816 NAAYQVLYkQMFNK-----KPPNALNSF-KMLDRLFNQNKKDTRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKI-NSK 887
Cdd:COG1474 97 STRYRVLS-RILEElgsgeDIPSTGLSTdELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGAR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 888 LVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQ 965
Cdd:COG1474 175 VGVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAID 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 966 ICRKAFEN--RRGQKIV-PRDITEATNQLFDSPLTNAINYLPWPFKMFLtCIIVELRMLNDFIIPYKKVLNRYKVLVETS 1042
Cdd:COG1474 255 LLRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEEL 333
|
330 340
....*....|....*....|....*.
gi 1047805970 1043 GkyIGMCSNTELFKImLDKLVKMGIL 1068
Cdd:COG1474 334 G--VDPLSYRRVRDY-LSELEMLGLI 356
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
732-1043 |
1.33e-30 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 124.67 E-value: 1.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 732 MMQLDVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKLLpNFNVFEINGMN 811
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 812 VvhpNAAYQVLYK-----QMFNKKPPNALNSF-KMLDRLFNQNkkDTRNVSILII-DEIDYLITKTQKVLFTLfdwpTKI 884
Cdd:TIGR02928 85 L---DTLYQVLVElanqlRGSGEEVPTTGLSTsEVFRRLYKEL--NERGDSLIIVlDEIDYLVGDDDDLLYQL----SRA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 885 -------NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVAN 955
Cdd:TIGR02928 156 rsngdldNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 956 VSGDIRKALQICRKAFEN--RRGQKIVPRD-ITEATNQLFDSPLTNAINYLPWPFKMFLTCIIvELRMLNDFIIPYKKVL 1032
Cdd:TIGR02928 236 EHGDARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIA-NLAANDEDPFRTGEVY 314
|
330
....*....|.
gi 1047805970 1033 NRYKVLVETSG 1043
Cdd:TIGR02928 315 EVYKEVCEDIG 325
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
736-1025 |
1.95e-30 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 124.96 E-value: 1.95e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 736 DVVPKYLPCREKEIKEVHAFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKqkllpnfnvfeinGMNVVHP 815
Cdd:PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVL-IYGPPGTGKTTTVKKVFEELEEIAV-------------KVVYVYI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 816 N--------AAYQVLYKQMFNKKPPNALNSFkmlDRLFNQ--NKKDTRN-VSILIIDEIDYLITKT-QKVLFTLfdwpTK 883
Cdd:PRK00411 92 NcqidrtryAIFSEIARQLFGHPPPSSGLSF---DELFDKiaEYLDERDrVLIVALDDINYLFEKEgNDVLYSL----LR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 884 IN-----SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANV 956
Cdd:PRK00411 165 AHeeypgARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGfyPGVVDDEVLDLIADLTARE 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1047805970 957 SGDIRKALQICRKAFEN--RRG-QKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCIIVELRMLNDFI 1025
Cdd:PRK00411 245 HGDARVAIDLLRRAGLIaeREGsRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEV 316
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
769-915 |
2.30e-14 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 71.09 E-value: 2.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 769 LYISGMPGTGKTATVYSVIQLLqhktkqkllpNFNVFEINGMNVVhpnaayqvlykqmfnkkPPNALNSFKMLDRLFNQN 848
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1047805970 849 KKDtrNVSILIIDEIDYLITK-----------TQKVLFTLFDWPTKINSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 915
Cdd:pfam00004 54 KKL--APCVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
743-914 |
3.31e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 59.85 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 743 PCREKEIKEVhafleSGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHktkqkllPNFNVFEINGMNVvhpnaaYQVL 822
Cdd:cd00009 1 VGQEEAIEAL-----REALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDL------LEGL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 823 YKQMFNKkppnalnsFKMLDRLFNQNKKdtRNVSILIIDEIDYLITKTQKVLFTLFD---WPTKINSKLVLIAISNTM-- 897
Cdd:cd00009 63 VVAELFG--------HFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNALLRVLEtlnDLRIDRENVRVIGATNRPll 132
|
170
....*....|....*...
gi 1047805970 898 -DLPERLIPRCRSRLAFG 914
Cdd:cd00009 133 gDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
765-910 |
4.04e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 765 SNQILYISGMPGTGKTATVYSVIQLLQhktkqklLPNFNVFEINGMNVVHPNAAYQVLYKQMFNKKPPNALNSFKMLDRL 844
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1047805970 845 FNQNKKDtrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSR 910
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
767-903 |
5.49e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.87 E-value: 5.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 767 QILYISGMPGTGKTAtvysviqLLQHKTKQKLLPNFNVFEINGMNVVHPNAAYQVLYKQMFNkkPPNALNSFKMLDRLFN 846
Cdd:pfam13401 6 GILVLTGESGTGKTT-------LLRRLLEQLPEVRDSVVFVDLPSGTSPKDLLRALLRALGL--PLSGRLSKEELLAALQ 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1047805970 847 QNKKDTRNVSILIIDEIDYLitkTQKVLFTLFDWPtKINSKLVLIAISNTMDLPERL 903
Cdd:pfam13401 77 QLLLALAVAVVLIIDEAQHL---SLEALEELRDLL-NLSSKLLQLILVGTPELRELL 129
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
742-783 |
9.91e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 44.03 E-value: 9.91e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1047805970 742 LPCREKEIKEVHAFLESGIkqSGSNQILYISGMPGTGKTATV 783
Cdd:pfam13191 2 LVGREEELEQLLDALDRVR--SGRPPSVLLTGEAGTGKTTLL 41
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
745-897 |
1.43e-04 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 44.62 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 745 REKEIKEVHAFLEsgikqSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKllpnfnVFEINGMNVvhpNAAYQVLYK 824
Cdd:pfam01637 4 REKELKELEEWAE-----RGPNLIYVIYGPEGCGKTALLRESIENLLDLGYYV------IYYDPLRRY---FISKLDRFE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 825 ------QMFNKKPPNAL-----NSFKMLDRLFNQNKKDTRNVsILIIDEIDYLITKTQ-----KVLFTLFDWPTK-INSK 887
Cdd:pfam01637 70 evrrlaEALGIAVPKAEleeskLAFLAIELLLEALKRRGKKI-AIIIDEVQQAIGLNGaellvKELLNLIEYLTKeYHLC 148
|
170
....*....|
gi 1047805970 888 LVLIAISNTM 897
Cdd:pfam01637 149 HVICLSSEGL 158
|
|
| AAA_lid_10 |
pfam17872 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
945-972 |
1.68e-04 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 407729 [Multi-domain] Cd Length: 99 Bit Score: 41.73 E-value: 1.68e-04
10 20
....*....|....*....|....*...
gi 1047805970 945 AIQLCARKVANVSGDIRKALQICRKAFE 972
Cdd:pfam17872 49 AIEIASRKVASVSGDARRALKICKRAAE 76
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
840-962 |
6.81e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 42.31 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 840 MLDRLFNQNKKDTRNVSILIIDEIDYLITK--TQKVLFTLFDWPTKINSKLVLiaisnTMDLPERLIP----RCRSRLAF 913
Cdd:pfam00308 83 IRDNKTNQFKEKYRNVDVLLIDDIQFLAGKegTQEEFFHTFNALHESGKQIVF-----SSDRPPKELEeledRLRSRFQW 157
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1047805970 914 GRLVfspykgdEIEK--------IIKERLENCKEIIDHTAIQLCARkvaNVSGDIRK 962
Cdd:pfam00308 158 GLVT-------DIEPpdletrlaILRKKAEAEGIEIPPEVLNFIAQ---RVTDNVRE 204
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
754-970 |
1.93e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 41.82 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 754 AFLESGIKQSGSnqILyISGMPGTGKTATVYSVIQLLqhktkqkllpNFNVFEINGMNVVhpnaayqvlykqmfnkkppn 833
Cdd:COG0464 182 LREEYGLPPPRG--LL-LYGPPGTGKTLLARALAGEL----------GLPLIEVDLSDLV-------------------- 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047805970 834 alNSF-----KMLDRLFNQNKKDTRnvSILIIDEIDYLITK--------TQKVLFTLFDWPTKINSKLVLIAISNTMD-L 899
Cdd:COG0464 229 --SKYvgeteKNLREVFDKARGLAP--CVLFIDEADALAGKrgevgdgvGRRVVNTLLTEMEELRSDVVVIAATNRPDlL 304
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1047805970 900 PERLiprcRSRlaFGRLV-FSPYKGDEIEKIIKERLENcKEIIDHTAIQLCARKVANVSG-DIRkalQICRKA 970
Cdd:COG0464 305 DPAL----LRR--FDEIIfFPLPDAEERLEIFRIHLRK-RPLDEDVDLEELAEATEGLSGaDIR---NVVRRA 367
|
|
| |
