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Conserved domains on  [gi|1046871948|ref|XP_017446198|]
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vasculin isoform X3 [Rattus norvegicus]

Protein Classification

Vasculin domain-containing protein( domain architecture ID 10634002)

Vasculin domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vasculin pfam15337
Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or ...
 270-352 6.95e-27

Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or Vasculin-like protein family 1, is likely to be a transcription factor. The domain family is found in eukaryotes, and is approximately 90 amino acids in length.


:

Pssm-ID: 464657  Cd Length: 97  Bit Score: 102.27  E-value: 6.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046871948 270 TDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWkNSTFKPT 349
Cdd:pfam15337   1 TDHLSSSLEAEHRLLRAMGWQEEPENDENFLPLTEDELKEFQSKTEQLKRNGLGKNGFLLQNRSLTLTFSPW-RSTRDAG 79


                  ...
gi 1046871948 350 IEN 352
Cdd:pfam15337  80 VNE 82
 
Name Accession Description Interval E-value
Vasculin pfam15337
Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or ...
 270-352 6.95e-27

Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or Vasculin-like protein family 1, is likely to be a transcription factor. The domain family is found in eukaryotes, and is approximately 90 amino acids in length.


Pssm-ID: 464657  Cd Length: 97  Bit Score: 102.27  E-value: 6.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046871948 270 TDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWkNSTFKPT 349
Cdd:pfam15337   1 TDHLSSSLEAEHRLLRAMGWQEEPENDENFLPLTEDELKEFQSKTEQLKRNGLGKNGFLLQNRSLTLTFSPW-RSTRDAG 79


                  ...
gi 1046871948 350 IEN 352
Cdd:pfam15337  80 VNE 82
 
Name Accession Description Interval E-value
Vasculin pfam15337
Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or ...
 270-352 6.95e-27

Vascular protein family Vasculin-like 1; GC-rich promoter-binding protein 1-like 1 or Vasculin-like protein family 1, is likely to be a transcription factor. The domain family is found in eukaryotes, and is approximately 90 amino acids in length.


Pssm-ID: 464657  Cd Length: 97  Bit Score: 102.27  E-value: 6.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046871948 270 TDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWkNSTFKPT 349
Cdd:pfam15337   1 TDHLSSSLEAEHRLLRAMGWQEEPENDENFLPLTEDELKEFQSKTEQLKRNGLGKNGFLLQNRSLTLTFSPW-RSTRDAG 79


                  ...
gi 1046871948 350 IEN 352
Cdd:pfam15337  80 VNE 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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