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Conserved domains on  [gi|1046803149|gb|OCL09187|]
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hypothetical protein AOQ84DRAFT_278306, partial [Glonium stellatum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NACHT super family cl26020
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
85-191 4.68e-08

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG5635:

Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 53.66  E-value: 4.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046803149  85 VRKSTKVFLLIDGLDEFEgTDETREELIDLFKDLAS-LENVKICLSSRPWNIFRDAFSGFPQLRLEDLTHGDIRKYVntq 163
Cdd:COG5635   252 LLRNGRLLLLLDGLDEVP-DEADRDEVLNQLRRFLErYPKARVIITSRPEGYDSSELEGFEVLELAPLSDEQIEEFL--- 327

                          90       100
                  ....*....|....*....|....*...
gi 1046803149 164 lhthirfRHLLRYDKRNAERLIAAITDK 191
Cdd:COG5635   328 -------KKWFEATERKAERLLEALEEN 348
 
Name Accession Description Interval E-value
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
85-191 4.68e-08

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 53.66  E-value: 4.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046803149  85 VRKSTKVFLLIDGLDEFEgTDETREELIDLFKDLAS-LENVKICLSSRPWNIFRDAFSGFPQLRLEDLTHGDIRKYVntq 163
Cdd:COG5635   252 LLRNGRLLLLLDGLDEVP-DEADRDEVLNQLRRFLErYPKARVIITSRPEGYDSSELEGFEVLELAPLSDEQIEEFL--- 327

                          90       100
                  ....*....|....*....|....*...
gi 1046803149 164 lhthirfRHLLRYDKRNAERLIAAITDK 191
Cdd:COG5635   328 -------KKWFEATERKAERLLEALEEN 348
RRM1_PES4_MIP6 cd21601
RNA recognition motif 1 (RRM1) found in Saccharomyces cerevisiae protein PES4, protein MIP6 ...
 93-130 6.09e-03

RNA recognition motif 1 (RRM1) found in Saccharomyces cerevisiae protein PES4, protein MIP6 and similar proteins; The family includes PES4 (also called DNA polymerase epsilon suppressor 4) and MIP6 (also called MEX67-interacting protein 6), both of which are predicted RNA binding proteins that may act as regulators of late translation, protection, and mRNA localization. MIP6 acts as a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores. It interacts with MEX67. Members in this family contain four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the first RRM motif.


Pssm-ID: 410180 [Multi-domain]  Cd Length: 80  Bit Score: 35.01  E-value: 6.09e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1046803149  93 LLIDGLDEfegtDETREELIDLFKDLASLENVKICLSS 130
Cdd:cd21601     3 LFIGDLDK----DVTEEMLRDIFSKYKSLVSVKICLDS 36
 
Name Accession Description Interval E-value
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
85-191 4.68e-08

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 53.66  E-value: 4.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046803149  85 VRKSTKVFLLIDGLDEFEgTDETREELIDLFKDLAS-LENVKICLSSRPWNIFRDAFSGFPQLRLEDLTHGDIRKYVntq 163
Cdd:COG5635   252 LLRNGRLLLLLDGLDEVP-DEADRDEVLNQLRRFLErYPKARVIITSRPEGYDSSELEGFEVLELAPLSDEQIEEFL--- 327

                          90       100
                  ....*....|....*....|....*...
gi 1046803149 164 lhthirfRHLLRYDKRNAERLIAAITDK 191
Cdd:COG5635   328 -------KKWFEATERKAERLLEALEEN 348
RRM1_PES4_MIP6 cd21601
RNA recognition motif 1 (RRM1) found in Saccharomyces cerevisiae protein PES4, protein MIP6 ...
 93-130 6.09e-03

RNA recognition motif 1 (RRM1) found in Saccharomyces cerevisiae protein PES4, protein MIP6 and similar proteins; The family includes PES4 (also called DNA polymerase epsilon suppressor 4) and MIP6 (also called MEX67-interacting protein 6), both of which are predicted RNA binding proteins that may act as regulators of late translation, protection, and mRNA localization. MIP6 acts as a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores. It interacts with MEX67. Members in this family contain four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the first RRM motif.


Pssm-ID: 410180 [Multi-domain]  Cd Length: 80  Bit Score: 35.01  E-value: 6.09e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1046803149  93 LLIDGLDEfegtDETREELIDLFKDLASLENVKICLSS 130
Cdd:cd21601     3 LFIGDLDK----DVTEEMLRDIFSKYKSLVSVKICLDS 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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