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Conserved domains on  [gi|1046553221|gb|ANV82657|]
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NADH dehydrogenase subunit F, partial (plastid) [Isachne sikkimensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhF super family cl33324
NADH dehydrogenase subunit 5
 1-220 5.20e-160

NADH dehydrogenase subunit 5


The actual alignment was detected with superfamily member CHL00025:

Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 460.13  E-value: 5.20e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGY 80
Cdd:CHL00025    8 AWIIPFLPLPVPMLIGLGLLLFPTATKNLRRMWAFPSILLLSIVMIFSLNLSIQQINGSSIYQYLWSWTINNDFSLEFGY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  81 LIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFT 160
Cdd:CHL00025   88 LIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFT 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 161 RPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNGMNSLLTT 220
Cdd:CHL00025  168 RPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNLLFAT 227
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-220 5.20e-160

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 460.13  E-value: 5.20e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGY 80
Cdd:CHL00025    8 AWIIPFLPLPVPMLIGLGLLLFPTATKNLRRMWAFPSILLLSIVMIFSLNLSIQQINGSSIYQYLWSWTINNDFSLEFGY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  81 LIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFT 160
Cdd:CHL00025   88 LIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFT 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 161 RPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNGMNSLLTT 220
Cdd:CHL00025  168 RPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNLLFAT 227
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-202 3.07e-64

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 209.24  E-value: 3.07e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLpvimsmgFGLFLIPTVTKNLRRIWAF-PSVLLLSIAMVFSVYLSIQQINGSsIYQYLWSWTINNDFSLEFG 79
Cdd:COG1009     4 LWLIPLLPL-------LGALLAGLLGRRLGRRAAGwLAALAPLAAFVLSLLLFPAVLGGE-VVVELYTWIPVGSLGLDFG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  80 YLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWF 159
Cdd:COG1009    76 FRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWY 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1046553221 160 TRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLF 202
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 37-207 2.54e-51

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 174.78  E-value: 2.54e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  37 SVLLLSIAMVFSVYLSIQQINGSS---IYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEE 113
Cdd:TIGR01974  33 GIGSVGLSAALSAFVFVDFFLNGEgeaFTQSLFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEG 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 114 YLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWIT 193
Cdd:TIGR01974 113 YSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYF 192

                         170
                  ....*....|....
gi 1046553221 194 GSLEFRDLFKIANN 207
Cdd:TIGR01974 193 GTLNFQEVFALAPG 206
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 134-215 6.41e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.75  E-value: 6.41e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 134 SSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNG 213
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80


                  ..
gi 1046553221 214 MN 215
Cdd:pfam00361  81 LL 82
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-220 5.20e-160

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 460.13  E-value: 5.20e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGY 80
Cdd:CHL00025    8 AWIIPFLPLPVPMLIGLGLLLFPTATKNLRRMWAFPSILLLSIVMIFSLNLSIQQINGSSIYQYLWSWTINNDFSLEFGY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  81 LIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFT 160
Cdd:CHL00025   88 LIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFT 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 161 RPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNGMNSLLTT 220
Cdd:CHL00025  168 RPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNLLFAT 227
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-198 8.84e-89

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 274.98  E-value: 8.84e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGY 80
Cdd:PRK07376    8 AWLIPVLPLLGAVLVGLGLISFNQTTNRLRQPVAVLLISLVGAAAVLSYALLWSQIQGHEPYERLFEWASAGDFHLPMGY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  81 LIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFT 160
Cdd:PRK07376   88 VIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYD 167

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1046553221 161 RPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEF 198
Cdd:PRK07376  168 RKGAADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDF 205
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-202 3.07e-64

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 209.24  E-value: 3.07e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLpvimsmgFGLFLIPTVTKNLRRIWAF-PSVLLLSIAMVFSVYLSIQQINGSsIYQYLWSWTINNDFSLEFG 79
Cdd:COG1009     4 LWLIPLLPL-------LGALLAGLLGRRLGRRAAGwLAALAPLAAFVLSLLLFPAVLGGE-VVVELYTWIPVGSLGLDFG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  80 YLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWF 159
Cdd:COG1009    76 FRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWY 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1046553221 160 TRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLF 202
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-202 7.72e-62

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 203.08  E-value: 7.72e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   1 AWVIPLLPLpvimsMGFGLFLIptvtkNLRRIWAFPS----VLLLSIAMVFSVYLSIQ--QINGSSIYQYLWSWTINNDF 74
Cdd:PRK06590    5 LWLIVLLPL-----IGALILGL-----FGRRIGEKWAhlvgTGLVGLSALLSLVVFFDflLGGGRAFSQTLWTWISVGDF 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  75 SLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLL 154
Cdd:PRK06590   75 DVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLL 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1046553221 155 IGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLF 202
Cdd:PRK06590  155 IGFWYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVF 202
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 37-207 2.54e-51

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 174.78  E-value: 2.54e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  37 SVLLLSIAMVFSVYLSIQQINGSS---IYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEE 113
Cdd:TIGR01974  33 GIGSVGLSAALSAFVFVDFFLNGEgeaFTQSLFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEG 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 114 YLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWIT 193
Cdd:TIGR01974 113 YSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYF 192

                         170
                  ....*....|....
gi 1046553221 194 GSLEFRDLFKIANN 207
Cdd:TIGR01974 193 GTLNFQEVFALAPG 206
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 56-215 1.02e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 135.14  E-value: 1.02e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  56 INGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSS 135
Cdd:MTH00210   52 LNGSATYIKLWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSD 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 136 NLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNGMN 215
Cdd:MTH00210  132 NYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGLVLAMIMILKEFGTLEFSTISSLLVTNINKESLT 211
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 56-205 3.12e-34

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 128.27  E-value: 3.12e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  56 INGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSS 135
Cdd:MTH00020   52 FNSSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSD 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 136 NLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIA 205
Cdd:MTH00020  132 NYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMV 201
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 3-198 3.47e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 111.20  E-value: 3.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   3 VIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYlsiqqINGSSIYQYLWSWTINNDFSLEFGYLI 82
Cdd:MTH00032    4 LVLLLPFINAFLLGFFGRLIGTIGSGILSTICMGSSTLIALFLAYEVL-----INDAVVHIELYKWIESEIFITHIGLLY 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  83 DPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRP 162
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRI 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1046553221 163 IAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEF 198
Cdd:MTH00032  159 QANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDF 194
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 73-202 3.33e-24

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 99.99  E-value: 3.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  73 DFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSY 152
Cdd:PRK12647   53 SLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSF 132

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1046553221 153 LLIGFWFTRPIA-ASACQKAFVTNrVGDFGLLLGILGFFWITGSLEFRDLF 202
Cdd:PRK12647  133 LLIGFNHEREAArRAALQALLVTG-GGGLALLAGLILLGNVTGTYSLSELL 182
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 34-201 7.32e-23

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 95.75  E-value: 7.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  34 AFPSVLLLSIAMVFSVyLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEE 113
Cdd:PRK07390   40 AYLNLLMTLLAFVHSL-LALRAIWNQPPQQLSFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWG 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 114 YLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWIT 193
Cdd:PRK07390  119 LARFFALLGFFEAAMSGLALSDSLFFSYVLLEILTLSTYLLVGFWYAQPLVVTAARDAFLTKRVGDLLLLMGVVALSPLA 198


                  ....*...
gi 1046553221 194 GSLEFRDL 201
Cdd:PRK07390  199 GTLNFSDL 206
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 43-207 2.87e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 94.25  E-value: 2.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  43 IAMVFSVYLSIQQINGSSIYQYL-WSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYI 121
Cdd:MTH00211   37 LSFFISLIPLLIFLDQGLETILTnWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYL 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 122 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDL 201
Cdd:MTH00211  117 LLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQL 196


                  ....*.
gi 1046553221 202 FKIANN 207
Cdd:MTH00211  197 FILNLD 202
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 20-208 3.52e-22

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 94.22  E-value: 3.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  20 FLIPTVTKNLRRIWAFPSVLLLSIAMV--FSVYLSIQQINGSSIYQYLWSWTINNDFSLefgyLIDPLTSIMLILITTVG 97
Cdd:PRK12645   16 LLIPFLYKYFKRIHTGWFVLPVPVVLFiyFLSLIPTTMSGNTVMKTLPWIPSLGINFTL----YVDGLSLLFALLITGIG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  98 ILVLIYSDDYMSHDEEYL-RFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNR 176
Cdd:PRK12645   92 SLVVLYSIYYLSKKKEQLgNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITV 171

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1046553221 177 VGDFGLLLGILGFFWITGSLEFRDLFKIANNW 208
Cdd:PRK12645  172 FGGLSMLGGFILLYIMTGSFSIREMIANADEI 203
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 21-206 8.14e-21

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 90.29  E-value: 8.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  21 LIPTVTKNLRRIWAfpSVLLLSIAMV-FSVYLSIQQINGS-SIYQYLWSWTinNDFSLEFGYLIDPLTSIMLILITTVGI 98
Cdd:TIGR00940  14 LIPILYPSDQRIHI--GWFVLAIPLVcFLYTLGLYPYTASgGVLHYTIDWV--PELGLNFTLYMDGLALLFSLLITGIGV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  99 LVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVG 178
Cdd:TIGR00940  90 LVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYWHHRAHSRYGAQKSLTITVFG 169

                         170       180
                  ....*....|....*....|....*...
gi 1046553221 179 DFGLLLGILGFFWITGSLEFRDLFKIAN 206
Cdd:TIGR00940 170 GLAMLGGLILLGKITGSFSIDAVIASAD 197
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-201 1.82e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.67  E-value: 1.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   4 IPLLPLPVIMSMgFGLFLIPTVTKNLRRIWAFpSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTinndFSLEFGYLID 83
Cdd:COG0651     2 SHLLILPVLLPL-LAAALLLLLGRRRRLQRAL-SLLASLALLALALALLLQVLAGGPLVYALGGWP----APFGIVLVAD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  84 PLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPi 163
Cdd:COG0651    76 RLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKE- 154

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1046553221 164 AASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDL 201
Cdd:COG0651   155 ALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADL 192
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-197 3.34e-20

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 88.32  E-value: 3.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   3 VIPLLPLpvimsmgFGLFLIPTVTKNLRRI--WAFPSVLLLSIAMVFSVYlsiQQINGSSIYQYLWSW--TINNDFSLEf 78
Cdd:PRK12648    5 LLVLLPF-------LGALLAALLPRNARNAeaWLAGLVALAALVLLALLY---PAVAAGEVIRAEIEWlpALGLNLSLR- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  79 gylIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFW 158
Cdd:PRK12648   74 ---LDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYW 150

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1046553221 159 FTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLE 197
Cdd:PRK12648  151 HHRADARRGARMALTVTGAGGLALLAGVLLLGHIVGSYD 189
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 73-187 2.62e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 85.75  E-value: 2.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  73 DFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYL-RFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCS 151
Cdd:PRK12644   63 SLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDEPRLgRFAAELVAFAGAMFGLVTSDNLLLLYVFWELTTVLS 142

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1046553221 152 YLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGIL 187
Cdd:PRK12644  143 FLLIGHYAERAASRRAALQALLVTTAGGLAMLVGII 178
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 38-198 3.06e-19

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 85.41  E-value: 3.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  38 VLLLSIAMVFSVYlSIQQINGSSIYQYLWSWtinNDFSLeFGYLIDPLTSIMLILITTVGILVLIYSDDYMS-------H 110
Cdd:PRK06525   34 AALTTLCMLSLAY-AFYQAGKVAVTLTLVNL---GDVAL-FGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSpgnrehpV 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 111 DEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTrPIAASACQKAFVTNRVGDFGLLLGILGFF 190
Cdd:PRK06525  109 HEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQS-PKALRSALKALLITHIGSLGLYLAAATLF 187


                  ....*...
gi 1046553221 191 WITGSLEF 198
Cdd:PRK06525  188 LQTGTFAL 195
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 134-215 6.41e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.75  E-value: 6.41e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 134 SSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNNG 213
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80


                  ..
gi 1046553221 214 MN 215
Cdd:pfam00361  81 LL 82
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 76-197 1.77e-18

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 83.34  E-value: 1.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  76 LEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLI 155
Cdd:PRK12649   72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1046553221 156 GFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLE 197
Cdd:PRK12649  152 GYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYD 193
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 66-210 2.77e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 82.65  E-value: 2.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  66 WSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWE 145
Cdd:MTH00066   64 FHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWE 143

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046553221 146 LVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIP 210
Cdd:MTH00066  144 GVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLNDNSTL 208
PRK12646 PRK12646
DUF4040 family protein;
76-195 3.26e-15

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 74.02  E-value: 3.26e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  76 LEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYL-RFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLL 154
Cdd:PRK12646   70 INLDLRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKDNLpRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLL 149

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1046553221 155 IGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGS 195
Cdd:PRK12646  150 ISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGT 190
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 107-184 2.46e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 71.02  E-value: 2.46e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046553221 107 YMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLL 184
Cdd:MTH00137  111 YMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLIL 188
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 107-202 4.74e-14

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 70.19  E-value: 4.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 107 YMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGI 186
Cdd:MTH00004  107 YMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANTAALQAIIYNRIGDIGLILSM 186

                          90
                  ....*....|....*.
gi 1046553221 187 LGFFWITGSLEFRDLF 202
Cdd:MTH00004  187 AWLAMTLNTWEIQQLF 202
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-186 8.72e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 69.36  E-value: 8.72e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   2 WVIPLLPLPVIMSMgFGLFLIPTVT---KNLRRIWAfpsVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINN------ 72
Cdd:PRK08376    2 LGEHLPPLLIIIPL-FGAFSMPIVSllgGKAREIWA---VLISFLTLIVALLVFYEVWNNGTIVYVLGAESPTLtlpfgs 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  73 -DFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCS 151
Cdd:PRK08376   78 gGFPIRIIWEVDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIAS 157

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1046553221 152 YLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGI 186
Cdd:PRK08376  158 YALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI 192
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 68-118 1.11e-13

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 63.22  E-value: 1.11e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1046553221  68 WTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFF 118
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 107-207 1.83e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 68.73  E-value: 1.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 107 YMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGI 186
Cdd:MTH00108  107 YMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAM 186

                          90       100
                  ....*....|....*....|.
gi 1046553221 187 LGFFWITGSLEFRDLFKIANN 207
Cdd:MTH00108  187 AWFLLNLNSWDLQQIFMLNPN 207
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 40-207 2.01e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 65.38  E-value: 2.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  40 LLSIAMVFSVYLSIQqINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFV 119
Cdd:MTH00208   64 TLAFLSLINLLIWIL-LGCPNINISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFR 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 120 YISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFR 199
Cdd:MTH00208  143 LLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLN 222


                  ....*...
gi 1046553221 200 DLFKIANN 207
Cdd:MTH00208  223 EILSLNNS 230
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 9-210 3.73e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.55  E-value: 3.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   9 LPVIMsmGFGLFLIPTVTKNLRRIWAFpsvLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSI 88
Cdd:COG1008    12 LPLLG--ALLLLLLPRRNARLARWVAL---AVSLLTLLLSLYLLAGFDPGTGGFQFVESYPWIPSLGISYHLGVDGISLP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  89 MLILITTVGILVLIYSddyMSHDEEYLR-FFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFW-FTRPIAAS 166
Cdd:COG1008    87 LVLLTALLTPLAILAS---WNEIKKRPKlYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWgGERRIYAA 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1046553221 167 AcqKAFVTNRVGDFGLLLGILGFFWITGSLEFrDLFKIANNWIP 210
Cdd:COG1008   164 I--KFFLYTLAGSLLMLVAILALYFLAGALTF-DIAELAAAPLP 204
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 12-198 6.70e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 58.20  E-value: 6.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  12 IMSMGFGLFLIPTVTK---NLRRIWAFPSVLLLSIAMVFSVY-LSIQQINGSSIYQYLWSWTINNDFSLEfgylIDPLTS 87
Cdd:PRK08667    5 LFLGAILLLLAAAVIPlvfRHKRKRVWQSVLWLVIAIALLLFaGSLQLFTGNPLDIPLWGIAPGLDITFH----IDRLAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  88 IMLILITTVGILVLIYSDDYMSHDEEYLRFFV---YISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIA 164
Cdd:PRK08667   81 FFIILIGLVSLCVAIYSLGYNEHMSSNERANLlsaLTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEET 160

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1046553221 165 ASACQKAFVTNRVGDFGLLLGILGFFWITGSLEF 198
Cdd:PRK08667  161 QRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194
PRK12650 PRK12650
DUF4040 family protein;
17-156 1.16e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 57.36  E-value: 1.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  17 FGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSI-YQYLWSWTI-NNDFSLEFGYLIDPLTSIMLILIT 94
Cdd:PRK12650   10 LAVVLAPPLVRVLDRKAGWPLAAIFVAAAGLLLKELPPILDGDALtWSVTWIPDLlGNGVDVNLALRADALSLFFALLAL 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046553221  95 TVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIG 156
Cdd:PRK12650   90 VIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIA 151
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-201 2.30e-09

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 56.28  E-value: 2.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   4 IPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQylwswtinndfslefGYLID 83
Cdd:COG1007     5 LALLPEIILLLGALVLLLLDLFLPRRSRRLLAGLALLGLLLALALLLLALGGGTGTAFGG---------------MFVVD 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  84 PLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTS-MLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRP 162
Cdd:COG1007    70 GFALFFKLLILLAALLVLLLSRDYLERRGLLRGEFYALLLFATLgMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDR 149

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1046553221 163 IAASACQKAFVTnrvGDFG---LLLGILGFFWITGSLEFRDL 201
Cdd:COG1007   150 RSSEAALKYFLL---GALSsgfLLYGISLLYGATGSLNLAGI 188
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 38-189 6.96e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 55.04  E-value: 6.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  38 VLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRF 117
Cdd:MTH00209    6 MFSLMLLFLFSFLMFVIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRF 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046553221 118 FVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPiAASACQKAFVTNRVGDFGLLLGILGF 189
Cdd:MTH00209   86 ILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSK-SLSAGMLTALTNRVGDALLILSIAWM 156
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 37-198 1.32e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 54.38  E-value: 1.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  37 SVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEEYLR 116
Cdd:MTH00165    7 SFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221 117 FFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIgFWFTRPIAASACQKAFVTNRVGDFGLLLGIlGFFWITGSL 196
Cdd:MTH00165   87 FIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYYQNKKSYNAGMLTALSNRIGDVAILLSI-AWMMNFGSW 164


                  ..
gi 1046553221 197 EF 198
Cdd:MTH00165  165 NF 166
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
3-201 1.69e-08

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 53.93  E-value: 1.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   3 VIPLLPLPVIMSMGFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIqqingssiyqyLWSWTINNDFSLefgyli 82
Cdd:PRK08168    5 VCALLPAVLMSLAAGGLLLSRWLTRALWRIAQAASLAGLFLALLGLVLFAT-----------GAAWPAAAWLEV------ 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  83 DPLTSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRP 162
Cdd:PRK08168   68 SGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRP 147

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1046553221 163 IAASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDL 201
Cdd:PRK08168  148 FARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSAL 186
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-214 3.60e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 46.89  E-value: 3.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   8 PLPVIMSmgFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSwtinnDFSLEFG--YLIDPL 85
Cdd:PRK12667   11 ILLVLFA--FLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKPIVYLFG-----GWPAPIGivYEVDLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  86 TSIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAA 165
Cdd:PRK12667   84 GALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAV 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1046553221 166 SACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGM 214
Cdd:PRK12667  164 EAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLsAKIRGLSFPLTGG 213
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-201 7.88e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.96  E-value: 7.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   4 IPLLPLPVIMSMgFGLFLIPTVTKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEFGYLID 83
Cdd:PRK05846    3 WPLLSLLIFLPL-IGGLLVLLTERFGARLARWIALIGTLLTLLLSLVLWIGFDSSNAGFQFVEKHPWIPRFGISYHLGVD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  84 PLTSIMLILITTVGILVLIYSddyMSHDEEYLRFFVY-ISFFNTSMLGLVTSSNLIQIYFFWE--LVGMcsYLLIGFW-- 158
Cdd:PRK05846   82 GISLLLVVLTALLTPLAVLAS---WEEIKKRVKFYMAaLLWLEGGVIGVFAALDLLLFYVFFEamLIPM--YFLIGVWgg 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1046553221 159 FTRPIAASacqKAFVTNRVGDFGLLLGILGFFWI----TGSLEFRDL 201
Cdd:PRK05846  157 KNRIYAAT---KFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADL 200
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 81-161 2.96e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.07  E-value: 2.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  81 LIDPLTSIMLILITTVGILVLIYSDDYMSHDEE-------YLRFfvYISFFNT---SMLGLVTSSNLIQIYFFWELVGMC 150
Cdd:PRK06458   66 FIDDLNVFFLALIGVVGFLTSLYSIGYMRHEVEhgelspvTLRL--YYGMYQLflfTMLLALTSNNLGLMWVAIEATTLS 143

                          90
                  ....*....|.
gi 1046553221 151 SYLLIGFWFTR 161
Cdd:PRK06458  144 SALLVGIYRTR 154
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 37-186 8.93e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.75  E-value: 8.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  37 SVLLLSIA-MVFSVYLSIQQINgssiYQYLWSWTINNDFS--LEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEE 113
Cdd:MTH00207   11 SYLLWFMSiLMFPLSLYLMMCN----KTILIEWEIFTISSspINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKF 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046553221 114 YLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIgFWFTRPIAASACQKAFVTNRVGDFGLLLGI 186
Cdd:MTH00207   87 LSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILV-IYYQNPKSLGAGMITALTNRIGDVMLLLSI 158
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
17-198 1.53e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.11  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  17 FGLFLIPTVTKNLRRIWAfPSVLLLSIAMVFSVYLSIQqingsSIYQYLwswtinnDFSLEFgYLIDPLTSIMLILITTV 96
Cdd:PRK12668   14 AGALLVPFLPGRARKALL-LLAPVLAVLAVLTVPEGTY-----LTVTFL-------GFDLVL-GRVDKLSRVFGLIFGIM 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  97 GILVLIYSddYMSHDE-EYLRFFVYISffntSMLGLVTSSNLIQIYFFWELVGMCSYLLIgfWFTR-PIAASACQKAFVT 174
Cdd:PRK12668   80 AFIGVIYA--LHVKDPgQHVAALLYVG----SALGAVFAGDLLTLFVFWELMAFTSTFLV--WARGtKAAVRAGFRYLLV 151

                         170       180
                  ....*....|....*....|....
gi 1046553221 175 NRVGDFGLLLGILGFFWITGSLEF 198
Cdd:PRK12668  152 HVLGGVLLLAGILLHYAETGSFAF 175
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-212 2.16e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221   9 LPVIMSMGFGLfliptvTKNLRRIWAFpSVLLLSIAMVFSVYLSIQQINGSSIYQYLWSWTINNDFSLEfgylIDPLTSI 88
Cdd:PRK12662   12 IPLLSAVVCAL------LKNRKLVKII-SCIVVAVSFFIALVLFVQVYSGGVIKYSLGGWGPPYGIELR----VDILSAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  89 MLILITTVGILVLIYSDdYMSHDE----EYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPiA 164
Cdd:PRK12662   81 MLVLVNFIAVMSVLYGI-YPNRKEisvnKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKK-A 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1046553221 165 ASACQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWIPNN 212
Cdd:PRK12662  159 LVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNR 206
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 68-157 3.32e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.87  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  68 WTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHD--EEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWE 145
Cdd:PRK06589   67 FELMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINniDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYE 146

                          90
                  ....*....|..
gi 1046553221 146 LVGMCSYLLIGF 157
Cdd:PRK06589  147 LLTISTAFLIGH 158
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 37-189 3.69e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 37.90  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  37 SVLLLSIAMVFSVYLSIQQINGSSiyqYLWSWTINNDFSLEFGY--LIDPLTSIMLILITTVGILVLIYSDDYMSHDEEY 114
Cdd:MTH00151    8 SFLLFSYSVFLFPLLGYFGLNGIS---LIFEWELLSVSSCSFSFelVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFL 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046553221 115 LRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFvTNRVGDFGLLLGILGF 189
Cdd:MTH00151   85 KRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTAL-TNRIGDVLILLSIALL 158
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 74-190 6.10e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 37.20  E-value: 6.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046553221  74 FSLEFGYLIDPLtsIMLILITTVGILVLIYSDDYMSHDEEYLRFFVYISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYL 153
Cdd:MTH00095   37 LSLKFNFYFNSL--LFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFF 114

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1046553221 154 LIGFWFTRPiAASACQKAFVTNRVGDFGLLLGILGFF 190
Cdd:MTH00095  115 LVLFYNNWD-SNSGAMNTALTNRIGDFFIFLFFSGFI 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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