NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1044453467|gb|ANT48125|]
View 

AV2 [Sweet potato leaf curl Georgia virus]

Protein Classification

Gemini_V2 domain-containing protein( domain architecture ID 10478954)

Gemini_V2 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 3-82 8.78e-38

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


:

Pssm-ID: 366689  Cd Length: 78  Bit Score: 122.01  E-value: 8.78e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044453467   3 LWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCSDLIRILRVKQYGRANSRFAEISSLWgeTGKTEAELRD 82
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRV--QGTPESELRQ 78
 
Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 3-82 8.78e-38

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


Pssm-ID: 366689  Cd Length: 78  Bit Score: 122.01  E-value: 8.78e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044453467   3 LWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCSDLIRILRVKQYGRANSRFAEISSLWgeTGKTEAELRD 82
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRV--QGTPESELRQ 78
 
Name Accession Description Interval E-value
Gemini_V2 pfam01524
Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) ...
 3-82 8.78e-38

Geminivirus V2 protein; Disruption of the V2 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect tomato plants, suggesting that the V2 gene product is required for successful infection of the host.


Pssm-ID: 366689  Cd Length: 78  Bit Score: 122.01  E-value: 8.78e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044453467   3 LWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCSDLIRILRVKQYGRANSRFAEISSLWgeTGKTEAELRD 82
Cdd:pfam01524   1 MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVLRARNYVEATRRYSHFHSRV--QGTPESELRQ 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH