NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1041132366|ref|XP_017290641|]
View 

beta-2-glycoprotein 1 [Kryptolebias marmoratus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 263-350 1.53e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


:

Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.53e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 263 RAPCTVGIKRGRIFYNAKKIWIEDLKPNRVLHGEHVVFYCKNKAEKCGYPVASTCNDGNLPLPECFEEPGKIEYNLKAKS 342
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 1041132366 343 LPSEIRTC 350
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 5-262 5.87e-22

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366   5 LALLLFGLSALCTTVTSAKVCGRPPVPDGVDTSSlkrVFEVGEEVSLTCEQGYLSSTATSSRITCMAGGqWTESNlACAP 84
Cdd:PHA02927    9 LTLLGIGCVLSCCTIPSRPINMKFKNSVETDANA---NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIK 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  85 KMCPIPRPLQPFAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGT----WSHPPPLCKAVNCPLPKPPRDGRivHDk 160
Cdd:PHA02927   84 RRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN- 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 161 avmGTTTIYGQGW--TYECNPPKAPSFERGSCKADGTTTEPPICREVSCSVPTnVRNGIITFAVMRQHGYKEKVKYACNE 238
Cdd:PHA02927  161 ---GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKY 236

                         250       260
                  ....*....|....*....|....*
gi 1041132366 239 HYTLEGDAEIHCQNTGNWSSK-PVC 262
Cdd:PHA02927  237 GYKLSGSSSSTCSPGNTWQPElPKC 261
 
Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 263-350 1.53e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.53e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 263 RAPCTVGIKRGRIFYNAKKIWIEDLKPNRVLHGEHVVFYCKNKAEKCGYPVASTCNDGNLPLPECFEEPGKIEYNLKAKS 342
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 1041132366 343 LPSEIRTC 350
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 5-262 5.87e-22

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366   5 LALLLFGLSALCTTVTSAKVCGRPPVPDGVDTSSlkrVFEVGEEVSLTCEQGYLSSTATSSRITCMAGGqWTESNlACAP 84
Cdd:PHA02927    9 LTLLGIGCVLSCCTIPSRPINMKFKNSVETDANA---NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIK 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  85 KMCPIPRPLQPFAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGT----WSHPPPLCKAVNCPLPKPPRDGRivHDk 160
Cdd:PHA02927   84 RRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN- 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 161 avmGTTTIYGQGW--TYECNPPKAPSFERGSCKADGTTTEPPICREVSCSVPTnVRNGIITFAVMRQHGYKEKVKYACNE 238
Cdd:PHA02927  161 ---GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKY 236

                         250       260
                  ....*....|....*....|....*
gi 1041132366 239 HYTLEGDAEIHCQNTGNWSSK-PVC 262
Cdd:PHA02927  237 GYKLSGSSSSTCSPGNTWQPElPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
87-140 7.06e-11

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 57.12  E-value: 7.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1041132366  87 CPIPRPLQ--PFAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLC 140
Cdd:pfam00084   1 CPPPPDIPngKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 87-141 4.54e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 52.08  E-value: 4.54e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1041132366  87 CPIPRPLQP--FAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLCK 141
Cdd:cd00033     1 CPPPPVPENgtVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 87-140 8.33e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.37  E-value: 8.33e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1041132366   87 CPIPRPLQP--FAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLC 140
Cdd:smart00032   1 CPPPPDIENgtVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
 
Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 263-350 1.53e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.53e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 263 RAPCTVGIKRGRIFYNAKKIWIEDLKPNRVLHGEHVVFYCKNKAEKCGYPVASTCNDGNLPLPECFEEPGKIEYNLKAKS 342
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 1041132366 343 LPSEIRTC 350
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 5-262 5.87e-22

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 5.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366   5 LALLLFGLSALCTTVTSAKVCGRPPVPDGVDTSSlkrVFEVGEEVSLTCEQGYLSSTATSSRITCMAGGqWTESNlACAP 84
Cdd:PHA02927    9 LTLLGIGCVLSCCTIPSRPINMKFKNSVETDANA---NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIK 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  85 KMCPIPRPLQPFAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGT----WSHPPPLCKAVNCPLPKPPRDGRivHDk 160
Cdd:PHA02927   84 RRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN- 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 161 avmGTTTIYGQGW--TYECNPPKAPSFERGSCKADGTTTEPPICREVSCSVPTnVRNGIITFAVMRQHGYKEKVKYACNE 238
Cdd:PHA02927  161 ---GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKY 236

                         250       260
                  ....*....|....*....|....*
gi 1041132366 239 HYTLEGDAEIHCQNTGNWSSK-PVC 262
Cdd:PHA02927  237 GYKLSGSSSSTCSPGNTWQPElPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
87-140 7.06e-11

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 57.12  E-value: 7.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1041132366  87 CPIPRPLQ--PFAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLC 140
Cdd:pfam00084   1 CPPPPDIPngKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 108-262 7.69e-11

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 62.37  E-value: 7.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 108 VLNYTCDDGYVLLGANESRCLHD---GTWSHPPPLCKAVNCPLPKPPRDGRIVHDKAVMGTttiyGQGWTYECNPPKAPS 184
Cdd:PHA02639   45 LIEYTCNTDYALIGDRFRTCIKDknnAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKV----GDEIYYVCNEHKGVQ 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 185 F-----ERGSCKADGT-TTEPPICREVSCSVPTnVRNGIIT-FAVMRQHGYKEKVKYACNEHYTLEGDAEIHCQNTGNW- 256
Cdd:PHA02639  121 YslvgnEKITCIQDKSwKPDPPICKMINCRFPA-LQNGYINgIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWf 199


                  ....*.
gi 1041132366 257 SSKPVC 262
Cdd:PHA02639  200 PSIPTC 205
Sushi pfam00084
Sushi repeat (SCR repeat);
207-262 4.32e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 52.12  E-value: 4.32e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1041132366 207 CSVPTNVRNGIITFAvMRQHGYKEKVKYACNEHYTLEGDAEIHCQNTGNWSSK-PVC 262
Cdd:pfam00084   1 CPPPPDIPNGKVSAT-KNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPfPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 87-141 4.54e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 52.08  E-value: 4.54e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1041132366  87 CPIPRPLQP--FAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLCK 141
Cdd:cd00033     1 CPPPPVPENgtVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 87-140 8.33e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.37  E-value: 8.33e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1041132366   87 CPIPRPLQP--FAMGRTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLC 140
Cdd:smart00032   1 CPPPPDIENgtVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 207-263 6.04e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 49.00  E-value: 6.04e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1041132366 207 CSVPTNVRNGIITFaVMRQHGYKEKVKYACNEHYTLEGDAEIHCQNTGNWSSK-PVCR 263
Cdd:cd00033     1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPpPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 207-262 1.69e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.52  E-value: 1.69e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1041132366  207 CSVPTNVRNGIITFaVMRQHGYKEKVKYACNEHYTLEGDAEIHCQNTGNWS-SKPVC 262
Cdd:smart00032   1 CPPPPDIENGTVTS-SSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSpPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 25-82 7.22e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.92  E-value: 7.22e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1041132366  25 CGRPPVPDGVDTSSLKRVFEVGEEVSLTCEQGYlsSTATSSRITCMAGGQWTESNLAC 82
Cdd:cd00033     1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGY--TLVGSSTITCTENGGWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 25-82 4.48e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 43.67  E-value: 4.48e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1041132366   25 CGRPPVPDGVDTSSLKRVFEVGEEVSLTCEQGYLSStaTSSRITCMAGGQWTESNLAC 82
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLI--GSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
25-82 1.21e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 42.49  E-value: 1.21e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1041132366  25 CGRPPVPDGVDTSSLKRVFEVGEEVSLTCEQGYlsSTATSSRITCMAGGQWTESNLAC 82
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGY--RLVGSPTITCQEDGTWSPPFPEC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 4-149 7.98e-05

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 43.39  E-value: 7.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366   4 TLALLLFGLSALCTTVTSAKVCGRPPVPDGVDTSSLKRVFEVGEEVSLTC---EQGYLSSTATSSRITCMAGGQWTESNL 80
Cdd:PHA02817    3 NIHMLLILLCNKVYSLCDLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCgnnTRGVRYTLVGEKNIICEKDGKWNKEFP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1041132366  81 ACAPKMCPIPRPLQPFAMGRTEAP---FRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLCKAVNCPLPK 149
Cdd:PHA02817   83 VCKIIRCRFPALQNGFVNGIPDSKkfyYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSRDNITYNK 154
PHA02639 PHA02639
EEV host range protein; Provisional
 23-140 4.32e-04

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 41.57  E-value: 4.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  23 KVCGRPPVPDGVDTSSLKRVFEVGEEVSLTCEQ--GYLSSTATSSRITCMAGGQWTESNLACAPKMCPIPRPLQPFAMG- 99
Cdd:PHA02639   83 KECNDPPSIINGKIYNKREMYKVGDEIYYVCNEhkGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPALQNGYINGi 162

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1041132366 100 --RTEAPFRSVLNYTCDDGYVLLGANESRCLHDGTWSHPPPLC 140
Cdd:PHA02639  163 psNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTC 205
PHA02639 PHA02639
EEV host range protein; Provisional
 25-148 8.45e-04

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 40.80  E-value: 8.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  25 CGRPP-VPDGVDTSSLKRvFEVGEEVSLTCEQGY-LSSTATSSRITCMAGGQWTESNLACAPKMCPIPRPLQPFAMGRTE 102
Cdd:PHA02639   22 CDKPDdISNGFITELMEK-YEIGKLIEYTCNTDYaLIGDRFRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKR 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1041132366 103 APFR--SVLNYTCDD----GYVLLGANESRCLHDGTWSHPPPLCKAVNCPLP 148
Cdd:PHA02639  101 EMYKvgDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICKMINCRFP 152
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 18-144 6.62e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 38.14  E-value: 6.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366  18 TVTSAKVCGRPPVPDGVDTSSLKRVFEVGEEVSLTCEQGYlsSTATSSRITCMAGgQWteSNLACAPKMCPIPRPLQPFA 97
Cdd:PHA02954  122 TVTCPNAECQPLQLEHGSCQPVKEKYSFGEHITINCDVGY--EVIGASYISCTAN-SW--NVIPSCQQKCDIPSLSNGLI 196

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1041132366  98 MGRTEApFRSVLNYTCDDGYVLLGANESRCLhDGTWSHPPPLCKAVN 144
Cdd:PHA02954  197 SGSTFS-IGGVIHLSCKSGFTLTGSPSSTCI-DGKWNPVLPICVRSN 241
PHA02817 PHA02817
EEV Host range protein; Provisional
 140-286 7.98e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 37.23  E-value: 7.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041132366 140 CKAVNCPLPKPPRDGRIVHDKAVMGTttiyGQGWTYEC--NPPKAPSFERGS----CKADGT-TTEPPICREVSCSVPTn 212
Cdd:PHA02817   19 CDLNKCCYPPSIKNGYIYNKKTEYNI----GSNVTFFCgnNTRGVRYTLVGEkniiCEKDGKwNKEFPVCKIIRCRFPA- 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1041132366 213 VRNGIIT-FAVMRQHGYKEKVKYACNEHYTLEGDAEIHCQNTGNWSSK-PVCrapCTVGIKRGRIFYNakKIWIED 286
Cdd:PHA02817   94 LQNGFVNgIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKvPIC---SRDNITYNKIYIN--KVNIDD 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH