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Conserved domains on  [gi|1040823840|ref|XP_017258253|]
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nuclear transcription factor Y subunit A-1 isoform X5 [Daucus carota subsp. sativus]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10649995)

CCAAT-binding transcription factor similar to nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology:  GO:0003700|GO:0006355|GO:0016602
PubMed:  1549471

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
168-229 3.49e-33

CCAAT-Binding transcription Factor;


:

Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 116.75  E-value: 3.49e-33
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1040823840  168 MAQEPVYVNAKQYHGILRRRQSRAKAELEKKLIKDRKPYLHESRHQHAIRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
168-229 3.49e-33

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 116.75  E-value: 3.49e-33
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1040823840  168 MAQEPVYVNAKQYHGILRRRQSRAKAELEKKLIKDRKPYLHESRHQHAIRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
171-226 1.56e-31

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 112.28  E-value: 1.56e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1040823840 171 EPVYVNAKQYHGILRRRQSRAKAELEKKLIKDRKPYLHESRHQHAIRRARASGGRF 226
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
169-238 1.29e-11

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 63.67  E-value: 1.29e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1040823840 169 AQEPVYVNAKQYHGILRRRQSRAKaeLEKKLIKDRKPYLHESRHQHAIRRARASGGRFAKKSDVDNSKQS 238
Cdd:COG5224   157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLT 224
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
168-229 3.49e-33

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 116.75  E-value: 3.49e-33
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1040823840  168 MAQEPVYVNAKQYHGILRRRQSRAKAELEKKLIKDRKPYLHESRHQHAIRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
171-226 1.56e-31

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 112.28  E-value: 1.56e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1040823840 171 EPVYVNAKQYHGILRRRQSRAKAELEKKLIKDRKPYLHESRHQHAIRRARASGGRF 226
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
169-238 1.29e-11

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 63.67  E-value: 1.29e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1040823840 169 AQEPVYVNAKQYHGILRRRQSRAKaeLEKKLIKDRKPYLHESRHQHAIRRARASGGRFAKKSDVDNSKQS 238
Cdd:COG5224   157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLT 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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