|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1564-1674 |
9.07e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 9.07e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1564 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1643
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1039796193 1644 DmsDMFNKPQSETLKAGD-LRTRISRCQVCMK 1674
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1453-1560 |
1.34e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 208.60 E-value: 1.34e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1453 FLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1532
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1039796193 1533 PE---PMPMNMEPLKGQSIQPFISRCAVCEA 1560
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
828-1115 |
1.07e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 828 GEKGDPGPPGFDVP-GLPGERGSPGLPGAPGligppgSPGVPGKAGVPGFPGVKGEMGMMGPPGPPGPLGIPGRSGAPGL 906
Cdd:NF038329 117 GEKGEPGPAGPAGPaGEQGPRGDRGETGPAG------PAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 907 KGDDGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFLGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGS 986
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 987 PGLPGPKgnpglpgppgltgppgpkgnigdmgfpgpqgvdgppgppgfpgqpgspglpGQKGSKGEPGVSGI-GLPGLPG 1065
Cdd:NF038329 271 DGPDGKD---------------------------------------------------GERGPVGPAGKDGQnGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1066 PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGfPGTPGLP 1115
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPA-PKTPEVP 348
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
949-1211 |
1.03e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 949 GEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGLPGPKGNPGLPGPPGLTGPPGPKGNIGDMGFPGPQGVDGP 1028
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1029 PGPPGFPGQPGSPGLPGQKGSKGEPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGF 1108
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1109 PGTPGLPGPkgmngppgnpgfpgepgpvgaggrpgppgppgeKGKPGQ---DGIPGPAGQKGEpgqpgfgipgpPGLPGL 1185
Cdd:NF038329 277 DGERGPVGP---------------------------------AGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1039796193 1186 SGQKGDGGSPGLPGNPGLPGSKGEPG 1211
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
449-683 |
1.32e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 62.62 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 449 DKGLQGERGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGIPGEKGDKGQAGITGPKGLPGIPGPPGAPGFPGS 528
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 529 KGDPGDVLTlpGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERgppgspglpglpgnmgptgpv 608
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039796193 609 gfgppgpigekGIQGVAGNPGQPGLPGPKGDPGQTitqpGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSK 683
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
93-319 |
9.04e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.45 E-value: 9.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 93 GMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSPLPGPKGNQGYPGPPGIQGPPGP 172
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 173 KGISGPSGPPGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKrpidiefQKGDQgvpgdrg 252
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDG-------PRGDR------- 265
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039796193 253 PPGPPGIPGPPGPPGGVKGEKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKG 319
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1564-1674 |
9.07e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 9.07e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1564 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1643
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1039796193 1644 DmsDMFNKPQSETLKAGD-LRTRISRCQVCMK 1674
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1453-1560 |
1.34e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 208.60 E-value: 1.34e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1453 FLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1532
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1039796193 1533 PE---PMPMNMEPLKGQSIQPFISRCAVCEA 1560
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1562-1675 |
1.42e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 208.78 E-value: 1.42e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1562 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1640
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 1039796193 1641 ATVDMSDMFNKPQSETLKAGDLRTRISRCQVCMKR 1675
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1452-1561 |
5.90e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 186.83 E-value: 5.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1452 GFLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1531
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1039796193 1532 TPEP-----MPMNMEPLKGQsIQPFISRCAVCEAP 1561
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
828-1115 |
1.07e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 828 GEKGDPGPPGFDVP-GLPGERGSPGLPGAPGligppgSPGVPGKAGVPGFPGVKGEMGMMGPPGPPGPLGIPGRSGAPGL 906
Cdd:NF038329 117 GEKGEPGPAGPAGPaGEQGPRGDRGETGPAG------PAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 907 KGDDGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFLGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGS 986
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 987 PGLPGPKgnpglpgppgltgppgpkgnigdmgfpgpqgvdgppgppgfpgqpgspglpGQKGSKGEPGVSGI-GLPGLPG 1065
Cdd:NF038329 271 DGPDGKD---------------------------------------------------GERGPVGPAGKDGQnGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1066 PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGfPGTPGLP 1115
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPA-PKTPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
910-1168 |
2.41e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.01 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 910 DGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDflGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGL 989
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPA--GPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 990 PGPKGNPGLPGPPGLTGPPGPKGNIGDMGfPGPQGVDGPPGPPGFPGQPGSPGLPGQKGSKGEPGVSG----IGLPGLPG 1065
Cdd:NF038329 194 QGPRGETGPAGEQGPAGPAGPDGEAGPAG-EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGprgdRGEAGPDG 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1066 PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGPkgmngppgnpgfpgepgpvgaggrpgpp 1145
Cdd:NF038329 273 PDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK---------------------------- 324
|
250 260
....*....|....*....|...
gi 1039796193 1146 gppgekgkpgqDGIPGPAGQKGE 1168
Cdd:NF038329 325 -----------DGLPGKDGKDGQ 336
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
949-1211 |
1.03e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 949 GEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGLPGPKGNPGLPGPPGLTGPPGPKGNIGDMGFPGPQGVDGP 1028
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1029 PGPPGFPGQPGSPGLPGQKGSKGEPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGF 1108
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1109 PGTPGLPGPkgmngppgnpgfpgepgpvgaggrpgppgppgeKGKPGQ---DGIPGPAGQKGEpgqpgfgipgpPGLPGL 1185
Cdd:NF038329 277 DGERGPVGP---------------------------------AGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1039796193 1186 SGQKGDGGSPGLPGNPGLPGSKGEPG 1211
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
449-683 |
1.32e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 62.62 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 449 DKGLQGERGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGIPGEKGDKGQAGITGPKGLPGIPGPPGAPGFPGS 528
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 529 KGDPGDVLTlpGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERgppgspglpglpgnmgptgpv 608
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039796193 609 gfgppgpigekGIQGVAGNPGQPGLPGPKGDPGQTitqpGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSK 683
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
753-987 |
1.67e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 753 KGTPGPKGDRGFPGPSGPPGRTGLDGLPGPKGDVGPNGQPGPVGPPGLPgiglqgppgppgtpgpigqpglhGIPGEKGD 832
Cdd:NF038329 131 AGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD-----------------------GEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 833 PGPPGfdVPGLPGERGSPGLPGAPGLIGPPGSPGVPGKAGVPGFPGvKGEMGMMGPPGPPGPLGIPGRSGAPGLKGDDGM 912
Cdd:NF038329 188 AGEKG--PQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 913 QGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFL-GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSP 987
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
93-319 |
9.04e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.45 E-value: 9.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 93 GMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSPLPGPKGNQGYPGPPGIQGPPGP 172
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 173 KGISGPSGPPGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKrpidiefQKGDQgvpgdrg 252
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDG-------PRGDR------- 265
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039796193 253 PPGPPGIPGPPGPPGGVKGEKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKG 319
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
540-685 |
5.91e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.14 E-value: 5.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 540 GMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERGPPGSPGlpglpgnmGPTGPVGFGPPGPIGEK 619
Cdd:NF038329 138 GDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKG--------PQGPRGETGPAGEQGPA 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039796193 620 GIQGVAGNPGQPGLPGPKGDPGQTITQP-GKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 685
Cdd:NF038329 210 GPAGPDGEAGPAGEDGPAGPAGDGQQGPdGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1062-1117 |
9.24e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 47.49 E-value: 9.24e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 1062 GLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGP 1117
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
618-975 |
1.40e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 52.60 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 618 EKGIQGVAGNPGQPGLPGPKGDPGQTitqpGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIpgigppgpp 697
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGET----GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--------- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 698 gpkgfpgipgppgapgapgrmgpdgppgppgfpgpkgepgfglpgppgppgfpgfKGTPGPKGDRGFPGPSGPPGRTGLD 777
Cdd:NF038329 185 -------------------------------------------------------KGPAGEKGPQGPRGETGPAGEQGPA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 778 GLPGPKGDVGPNGQPGPVGPPGLpgiglqgppgppgtpgpigqpglhGIPGEKGDPGPPGFDVP----GLPGERGSPGLP 853
Cdd:NF038329 210 GPAGPDGEAGPAGEDGPAGPAGD------------------------GQQGPDGDPGPTGEDGPqgpdGPAGKDGPRGDR 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 854 GAPGLIGPPGSPGVPGKAGVPGFPGVKGemgmmgppgppgplgipgRSGAPGLKGDDGMQGQPGLPgpagekggkgepgl 933
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNG------------------KDGLPGKDGKDGQNGKDGLP-------------- 313
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1039796193 934 pgppgpmhpdflgskGEKGEPGLPGIPGLSGPKGYQGLPGDP 975
Cdd:NF038329 314 ---------------GKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
288-579 |
3.18e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 51.44 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 288 DGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPpgppglvipapgtgvtMGEKGNIGLPGLPGEKGERGfpgiqgpp 367
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGP----------------PGPQGERGEKGPAGPQGEAG-------- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 368 gfpgppgtavvgppgPPGYPGERGQKGDEGPPGICIPGSPGLDGQPGAPGLPGPPGPPGPQLPSRDEICKAgPPGPPGPP 447
Cdd:NF038329 172 ---------------PQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPA-GPAGDGQQ 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 448 GDKGLQGERGVKGDKGDtcfncigtgisgppgqpglpglpgpPGSLGIPGEKGDKGQAGITGPKGLPGIPGPPGAPGFPG 527
Cdd:NF038329 236 GPDGDPGPTGEDGPQGP-------------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDG 290
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039796193 528 SKGDPGdvltLPGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPG 579
Cdd:NF038329 291 QNGKDG----LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
626-685 |
1.26e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 1.26e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 626 GNPGQPGLPGPKGDPGQtitqPGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 685
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGP----PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
205-359 |
2.03e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.58 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 205 LNFQGPKGEKGEQGLQGPPGPPGQiseqkrpidiefqKGDQgvpgDRGPPGPPGIPGPPGPPGGVKGEKGEPGEAGKRGK 284
Cdd:NF038329 113 LKGDGEKGEPGPAGPAGPAGEQGP-------------RGDR----GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGP 175
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 285 PGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPPGPPGLVIPAPGTGVT-MGEKGNIGLPGLPGEKGERG 359
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPTGEDGPQG 251
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
96-359 |
4.33e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.43 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 96 GHDGAPGPQGIPGCNGTKGERGFPGspgfpglqgppgPPGIPGMKGEPGSIIMSPLPGPKGNQGYPGPpgiqgppgpkgi 175
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRG------------ETGPAGPAGPPGPQGERGEKGPAGPQGEAGP------------ 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 176 sgpsgpPGPPGLMGPPGPPGPPGPKGNMGLnfQGPKGEKGEQGLQGPPGPPGQISEQKRPIDIEFQKGDQGVPGDRGPPG 255
Cdd:NF038329 173 ------QGPAGKDGEAGAKGPAGEKGPQGP--RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 256 PPGIPGPPGPPGGVKGEKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGppgppglvipAPG 335
Cdd:NF038329 245 GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDG----------LPG 314
|
250 260
....*....|....*....|....
gi 1039796193 336 TGVTMGEKGNIGLPGLPGEKGERG 359
Cdd:NF038329 315 KDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
272-321 |
8.29e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.32 E-value: 8.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1039796193 272 EKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDI 321
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1564-1674 |
9.07e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.32 E-value: 9.07e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1564 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1643
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1039796193 1644 DmsDMFNKPQSETLKAGD-LRTRISRCQVCMK 1674
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1453-1560 |
1.34e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 208.60 E-value: 1.34e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1453 FLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1532
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1039796193 1533 PE---PMPMNMEPLKGQSIQPFISRCAVCEA 1560
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1562-1675 |
1.42e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 208.78 E-value: 1.42e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1562 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1640
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 1039796193 1641 ATVDMSDMFNKPQSETLKAGDLRTRISRCQVCMKR 1675
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1452-1561 |
5.90e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 186.83 E-value: 5.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1452 GFLITRHSQTTEAPQCPRGTVHIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1531
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1039796193 1532 TPEP-----MPMNMEPLKGQsIQPFISRCAVCEAP 1561
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
828-1115 |
1.07e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 828 GEKGDPGPPGFDVP-GLPGERGSPGLPGAPGligppgSPGVPGKAGVPGFPGVKGEMGMMGPPGPPGPLGIPGRSGAPGL 906
Cdd:NF038329 117 GEKGEPGPAGPAGPaGEQGPRGDRGETGPAG------PAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 907 KGDDGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFLGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGS 986
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 987 PGLPGPKgnpglpgppgltgppgpkgnigdmgfpgpqgvdgppgppgfpgqpgspglpGQKGSKGEPGVSGI-GLPGLPG 1065
Cdd:NF038329 271 DGPDGKD---------------------------------------------------GERGPVGPAGKDGQnGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1066 PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGfPGTPGLP 1115
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPA-PKTPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
910-1168 |
2.41e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.01 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 910 DGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDflGSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGL 989
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPA--GPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 990 PGPKGNPGLPGPPGLTGPPGPKGNIGDMGfPGPQGVDGPPGPPGFPGQPGSPGLPGQKGSKGEPGVSG----IGLPGLPG 1065
Cdd:NF038329 194 QGPRGETGPAGEQGPAGPAGPDGEAGPAG-EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGprgdRGEAGPDG 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1066 PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGPkgmngppgnpgfpgepgpvgaggrpgpp 1145
Cdd:NF038329 273 PDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK---------------------------- 324
|
250 260
....*....|....*....|...
gi 1039796193 1146 gppgekgkpgqDGIPGPAGQKGE 1168
Cdd:NF038329 325 -----------DGLPGKDGKDGQ 336
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
949-1211 |
1.03e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 949 GEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGLPGPKGNPGLPGPPGLTGPPGPKGNIGDMGFPGPQGVDGP 1028
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1029 PGPPGFPGQPGSPGLPGQKGSKGEPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGF 1108
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 1109 PGTPGLPGPkgmngppgnpgfpgepgpvgaggrpgppgppgeKGKPGQ---DGIPGPAGQKGEpgqpgfgipgpPGLPGL 1185
Cdd:NF038329 277 DGERGPVGP---------------------------------AGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1039796193 1186 SGQKGDGGSPGLPGNPGLPGSKGEPG 1211
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
449-683 |
1.32e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 62.62 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 449 DKGLQGERGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGIPGEKGDKGQAGITGPKGLPGIPGPPGAPGFPGS 528
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 529 KGDPGDVLTlpGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERgppgspglpglpgnmgptgpv 608
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039796193 609 gfgppgpigekGIQGVAGNPGQPGLPGPKGDPGQTitqpGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSK 683
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
753-987 |
1.67e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 753 KGTPGPKGDRGFPGPSGPPGRTGLDGLPGPKGDVGPNGQPGPVGPPGLPgiglqgppgppgtpgpigqpglhGIPGEKGD 832
Cdd:NF038329 131 AGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD-----------------------GEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 833 PGPPGfdVPGLPGERGSPGLPGAPGLIGPPGSPGVPGKAGVPGFPGvKGEMGMMGPPGPPGPLGIPGRSGAPGLKGDDGM 912
Cdd:NF038329 188 AGEKG--PQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 913 QGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFL-GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSP 987
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
93-319 |
9.04e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.45 E-value: 9.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 93 GMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSPLPGPKGNQGYPGPPGIQGPPGP 172
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 173 KGISGPSGPPGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKrpidiefQKGDQgvpgdrg 252
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDG-------PRGDR------- 265
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039796193 253 PPGPPGIPGPPGPPGGVKGEKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKG 319
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
540-685 |
5.91e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.14 E-value: 5.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 540 GMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKGERGPPGSPGlpglpgnmGPTGPVGFGPPGPIGEK 619
Cdd:NF038329 138 GDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKG--------PQGPRGETGPAGEQGPA 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039796193 620 GIQGVAGNPGQPGLPGPKGDPGQTITQP-GKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 685
Cdd:NF038329 210 GPAGPDGEAGPAGEDGPAGPAGDGQQGPdGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1062-1117 |
9.24e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 47.49 E-value: 9.24e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 1062 GLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGP 1117
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
618-975 |
1.40e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 52.60 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 618 EKGIQGVAGNPGQPGLPGPKGDPGQTitqpGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIpgigppgpp 697
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGET----GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--------- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 698 gpkgfpgipgppgapgapgrmgpdgppgppgfpgpkgepgfglpgppgppgfpgfKGTPGPKGDRGFPGPSGPPGRTGLD 777
Cdd:NF038329 185 -------------------------------------------------------KGPAGEKGPQGPRGETGPAGEQGPA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 778 GLPGPKGDVGPNGQPGPVGPPGLpgiglqgppgppgtpgpigqpglhGIPGEKGDPGPPGFDVP----GLPGERGSPGLP 853
Cdd:NF038329 210 GPAGPDGEAGPAGEDGPAGPAGD------------------------GQQGPDGDPGPTGEDGPqgpdGPAGKDGPRGDR 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 854 GAPGLIGPPGSPGVPGKAGVPGFPGVKGemgmmgppgppgplgipgRSGAPGLKGDDGMQGQPGLPgpagekggkgepgl 933
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNG------------------KDGLPGKDGKDGQNGKDGLP-------------- 313
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1039796193 934 pgppgpmhpdflgskGEKGEPGLPGIPGLSGPKGYQGLPGDP 975
Cdd:NF038329 314 ---------------GKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
288-579 |
3.18e-06 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 51.44 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 288 DGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPpgppglvipapgtgvtMGEKGNIGLPGLPGEKGERGfpgiqgpp 367
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGP----------------PGPQGERGEKGPAGPQGEAG-------- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 368 gfpgppgtavvgppgPPGYPGERGQKGDEGPPGICIPGSPGLDGQPGAPGLPGPPGPPGPQLPSRDEICKAgPPGPPGPP 447
Cdd:NF038329 172 ---------------PQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPA-GPAGDGQQ 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 448 GDKGLQGERGVKGDKGDtcfncigtgisgppgqpglpglpgpPGSLGIPGEKGDKGQAGITGPKGLPGIPGPPGAPGFPG 527
Cdd:NF038329 236 GPDGDPGPTGEDGPQGP-------------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDG 290
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039796193 528 SKGDPGdvltLPGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPG 579
Cdd:NF038329 291 QNGKDG----LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
626-685 |
1.26e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 1.26e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 626 GNPGQPGLPGPKGDPGQtitqPGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 685
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGP----PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1068-1118 |
2.32e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 2.32e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1039796193 1068 GEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGPK 1118
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1045-1106 |
1.24e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.24e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039796193 1045 GQKGSKGEPGVsgiglPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLP 1106
Cdd:pfam01391 1 GPPGPPGPPGP-----PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
205-359 |
2.03e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.58 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 205 LNFQGPKGEKGEQGLQGPPGPPGQiseqkrpidiefqKGDQgvpgDRGPPGPPGIPGPPGPPGGVKGEKGEPGEAGKRGK 284
Cdd:NF038329 113 LKGDGEKGEPGPAGPAGPAGEQGP-------------RGDR----GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGP 175
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039796193 285 PGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPPGPPGLVIPAPGTGVT-MGEKGNIGLPGLPGEKGERG 359
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPTGEDGPQG 251
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
96-359 |
4.33e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.43 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 96 GHDGAPGPQGIPGCNGTKGERGFPGspgfpglqgppgPPGIPGMKGEPGSIIMSPLPGPKGNQGYPGPpgiqgppgpkgi 175
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRG------------ETGPAGPAGPPGPQGERGEKGPAGPQGEAGP------------ 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 176 sgpsgpPGPPGLMGPPGPPGPPGPKGNMGLnfQGPKGEKGEQGLQGPPGPPGQISEQKRPIDIEFQKGDQGVPGDRGPPG 255
Cdd:NF038329 173 ------QGPAGKDGEAGAKGPAGEKGPQGP--RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039796193 256 PPGIPGPPGPPGGVKGEKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGppgppglvipAPG 335
Cdd:NF038329 245 GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDG----------LPG 314
|
250 260
....*....|....*....|....
gi 1039796193 336 TGVTMGEKGNIGLPGLPGEKGERG 359
Cdd:NF038329 315 KDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
272-321 |
8.29e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.32 E-value: 8.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1039796193 272 EKGEPGEAGKRGKPGKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDI 321
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| |
