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Conserved domains on  [gi|1039761521|ref|XP_017174649|]
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protein MROH8 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
13-211 4.72e-05

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 4.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   13 PGSRSALRGPVVPRRTPRHQPFGSPALHQLAASATRSTPKAPVPMPLPRR----GGEPrlAGARVVRTSLPRATPRSPKR 88
Cdd:PHA03307   132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEEtaraPSSP--PAEPPPSTPPAAASPRPPRR 209
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   89 -------VGRGAPLLSHAQRLTRRRHSSEQVPPEPEQAD--------------FRSGKWLQERAGGDARDPRHTPLARMG 147
Cdd:PHA03307   210 sspisasASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpenecplprpapITLPTRIWEASGWNGPSSRPGPASSSS 289
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039761521  148 SRQRASGTEEVVIPCASDSDSGS--VDLQLSNLDDVQKGGASVEFTDSDIADIPTLPQESLPDNLR 211
Cdd:PHA03307   290 SPRERSPSPSPSSPGSGPAPSSPraSSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
13-211 4.72e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 4.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   13 PGSRSALRGPVVPRRTPRHQPFGSPALHQLAASATRSTPKAPVPMPLPRR----GGEPrlAGARVVRTSLPRATPRSPKR 88
Cdd:PHA03307   132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEEtaraPSSP--PAEPPPSTPPAAASPRPPRR 209
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   89 -------VGRGAPLLSHAQRLTRRRHSSEQVPPEPEQAD--------------FRSGKWLQERAGGDARDPRHTPLARMG 147
Cdd:PHA03307   210 sspisasASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpenecplprpapITLPTRIWEASGWNGPSSRPGPASSSS 289
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039761521  148 SRQRASGTEEVVIPCASDSDSGS--VDLQLSNLDDVQKGGASVEFTDSDIADIPTLPQESLPDNLR 211
Cdd:PHA03307   290 SPRERSPSPSPSSPGSGPAPSSPraSSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
13-211 4.72e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 4.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   13 PGSRSALRGPVVPRRTPRHQPFGSPALHQLAASATRSTPKAPVPMPLPRR----GGEPrlAGARVVRTSLPRATPRSPKR 88
Cdd:PHA03307   132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEEtaraPSSP--PAEPPPSTPPAAASPRPPRR 209
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   89 -------VGRGAPLLSHAQRLTRRRHSSEQVPPEPEQAD--------------FRSGKWLQERAGGDARDPRHTPLARMG 147
Cdd:PHA03307   210 sspisasASSPAPAPGRSAADDAGASSSDSSSSESSGCGwgpenecplprpapITLPTRIWEASGWNGPSSRPGPASSSS 289
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039761521  148 SRQRASGTEEVVIPCASDSDSGS--VDLQLSNLDDVQKGGASVEFTDSDIADIPTLPQESLPDNLR 211
Cdd:PHA03307   290 SPRERSPSPSPSSPGSGPAPSSPraSSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
3-193 6.44e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 6.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521    3 GGGQARAPRcPGSRSALRGPVVPRRTPRHQPFGSPAL--HQLAASATRSTPKAPVPMPLP--RRGGEPRLAGARVVRtsl 78
Cdd:PRK07764   629 PAGAAAAPA-EASAAPAPGVAAPEHHPKHVAVPDASDggDGWPAKAGGAAPAAPPPAPAPaaPAAPAGAAPAQPAPA--- 704
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761521   79 PRATPRSPKRVGRGAPLLSHAQRLTRRRHSSEQV---PPEPEQADFRSGKWLQERAGGDARDPRhTPLARMGSRQRASGT 155
Cdd:PRK07764   705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPvplPPEPDDPPDPAGAPAQPPPPPAPAPAA-APAAAPPPSPPSEEE 783
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1039761521  156 EEVVIPCASDSDSGSVDLQLSNLDDVQKG-GASV--EFTDS 193
Cdd:PRK07764   784 EMAEDDAPSMDDEDRRDAEEVAMELLEEElGAKKieEFAAD 824
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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