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Conserved domains on  [gi|1034651950|ref|XP_016866870|]
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ubiquitin carboxyl-terminal hydrolase 45 isoform X3 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13432443)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
257-465 5.81e-74

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 234.20  E-value: 5.81e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 257 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 335
Cdd:cd02667    95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 336 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 414
Cdd:cd02667   153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034651950 415 SEHNtkkkNVPGLKAADNESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 465
Cdd:cd02667   233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
4-466 2.40e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 84.93  E-value: 2.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950   4 IDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERV-SKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAK 82
Cdd:COG5560   414 ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGK 493
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950  83 KHSSSKDKSQLIHDR---------KCIRKLSS--GETVTYQKNEN-------------LEMNGDSLMFASL---MNSESR 135
Cdd:COG5560   494 LGCFEIKVMCIYYGGnynmlepadKVLLQDIPqtDFVYLYETNDNgievpvvhlriekGYKSKRLFGDPFLqlnVLIKAS 573
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 136 LNESPTDDSEKEASHSESNV-DADSEPSesesaskQTGLFRSSSGsgvqPDGPLYPLSAGKllyTKETDSGDKEmaeais 214
Cdd:COG5560   574 IYDKLVKEFEELLVLVEMKKtDVDLVSE-------QVRLLREESS----PSSWLKLETEID---TKREEQVEEE------ 633
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 215 elrlsstvtgdqdfDRENQPLNIsNNLCFLEGKHLRSYSPQNAFQTLSQSyITTSKECSIQSCLYQFTSMELLMGNNKLL 294
Cdd:COG5560   634 --------------GQMNFNDAV-VISCEWEEKRYLSLFSYDPLWTIREI-GAAERTITLQDCLNEFSKPEQLGLSDSWY 697
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 295 CENCTKNKQkyqeetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLM-LDLAPFCSATc 373
Cdd:COG5560   698 CPGCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV- 757
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 374 knasVGDKVLYGLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglkaadNESAGQWVHVSDTYLQVVPESR 453
Cdd:COG5560   758 ----DDPRLIYDLYAVDNHYGGLSGGHYTAYAR-------------------------NFANNGWYLFDDSRITEVDPED 808
                         490
                  ....*....|...
gi 1034651950 454 ALSAQAYLLFYER 466
Cdd:COG5560   809 SVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
257-465 5.81e-74

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 234.20  E-value: 5.81e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 257 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 335
Cdd:cd02667    95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 336 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 414
Cdd:cd02667   153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034651950 415 SEHNtkkkNVPGLKAADNESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 465
Cdd:cd02667   233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
252-464 1.27e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 120.63  E-value: 1.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 252 YSPQNAFQTLSQSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQKYqeetsfaekkvegvytnarKQLLISA 331
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAI-------------------KQLKISR 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 332 VPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPFCsATCKNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKvrtps 411
Cdd:pfam00443 203 LPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYL-AEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK----- 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1034651950 412 rklsehntkkknvpglkaadNESAGQWVHVSDTYLQVVPESRA-LSAQAYLLFY 464
Cdd:pfam00443 277 --------------------AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
4-466 2.40e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 84.93  E-value: 2.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950   4 IDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERV-SKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAK 82
Cdd:COG5560   414 ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGK 493
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950  83 KHSSSKDKSQLIHDR---------KCIRKLSS--GETVTYQKNEN-------------LEMNGDSLMFASL---MNSESR 135
Cdd:COG5560   494 LGCFEIKVMCIYYGGnynmlepadKVLLQDIPqtDFVYLYETNDNgievpvvhlriekGYKSKRLFGDPFLqlnVLIKAS 573
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 136 LNESPTDDSEKEASHSESNV-DADSEPSesesaskQTGLFRSSSGsgvqPDGPLYPLSAGKllyTKETDSGDKEmaeais 214
Cdd:COG5560   574 IYDKLVKEFEELLVLVEMKKtDVDLVSE-------QVRLLREESS----PSSWLKLETEID---TKREEQVEEE------ 633
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 215 elrlsstvtgdqdfDRENQPLNIsNNLCFLEGKHLRSYSPQNAFQTLSQSyITTSKECSIQSCLYQFTSMELLMGNNKLL 294
Cdd:COG5560   634 --------------GQMNFNDAV-VISCEWEEKRYLSLFSYDPLWTIREI-GAAERTITLQDCLNEFSKPEQLGLSDSWY 697
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 295 CENCTKNKQkyqeetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLM-LDLAPFCSATc 373
Cdd:COG5560   698 CPGCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV- 757
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 374 knasVGDKVLYGLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglkaadNESAGQWVHVSDTYLQVVPESR 453
Cdd:COG5560   758 ----DDPRLIYDLYAVDNHYGGLSGGHYTAYAR-------------------------NFANNGWYLFDDSRITEVDPED 808
                         490
                  ....*....|...
gi 1034651950 454 ALSAQAYLLFYER 466
Cdd:COG5560   809 SVTSSAYVLFYRR 821
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2-41 1.08e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 68.18  E-value: 1.08e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEE 41
Cdd:cd02667    67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
273-406 3.42e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 68.74  E-value: 3.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950  273 SIQSCLYQFTSMELLMGNNKLLCEnctknKQKYQEetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLS--L 350
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAE-----KHGLQD---------------AKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034651950  351 RKVNRHVDFPLMLDLAPFCSATCKNASVGDKVlYGLYGIVEHSGSMREGHYTAYVK 406
Cdd:COG5077    399 VKINDRYEFPLEIDLLPFLDRDADKSENSDAV-YVLYGVLVHSGDLHEGHYYALLK 453
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
2-40 1.56e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 43.59  E-value: 1.56e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIE 40
Cdd:pfam00443 116 SLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPG 154
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
257-465 5.81e-74

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 234.20  E-value: 5.81e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 257 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 335
Cdd:cd02667    95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 336 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 414
Cdd:cd02667   153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1034651950 415 SEHNtkkkNVPGLKAADNESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 465
Cdd:cd02667   233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
266-465 1.65e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 124.13  E-value: 1.65e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 266 ITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKRFHQ 345
Cdd:cd02257    93 VKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKK--------------------QEATKRLKIKKLPPVLIIHLKRFSF 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 346 AGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGDK-VLYGLYGIVEHSG-SMREGHYTAYVKVRTPsrklsehntkkk 422
Cdd:cd02257   153 NEDgTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGsYKYELVAVVVHSGtSADSGHYVAYVKDPSD------------ 220
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1034651950 423 nvpglkaadnesaGQWVHVSDTYLQVVPESRAL-----SAQAYLLFYE 465
Cdd:cd02257   221 -------------GKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
273-464 1.20e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 123.15  E-value: 1.20e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 273 SIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvYTNARKQLLISAVPAVLILHLKRFhqAGLSLRK 352
Cdd:cd02661   163 SLEDALEQFTKPEQLDGENKYKCERCKK-------------------KVKASKQLTIHRAPNVLTIHLKRF--SNFRGGK 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 353 VNRHVDFPLMLDLAPFCSatcKNASVGDKvlYGLYGIVEHSG-SMREGHYTAYVKvrtpsrklsehntkkknvpglkaad 431
Cdd:cd02661   222 INKQISFPETLDLSPYMS---QPNDGPLK--YKLYAVLVHSGfSPHSGHYYCYVK------------------------- 271
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1034651950 432 nESAGQWVHVSDTYLQVVPESRALSAQAYLLFY 464
Cdd:cd02661   272 -SSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
252-464 1.27e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 120.63  E-value: 1.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 252 YSPQNAFQTLSQSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQKYqeetsfaekkvegvytnarKQLLISA 331
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAI-------------------KQLKISR 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 332 VPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPFCsATCKNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKvrtps 411
Cdd:pfam00443 203 LPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYL-AEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK----- 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1034651950 412 rklsehntkkknvpglkaadNESAGQWVHVSDTYLQVVPESRA-LSAQAYLLFY 464
Cdd:pfam00443 277 --------------------AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
270-465 7.01e-30

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 116.23  E-value: 7.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 270 KECSIQSCLYQFTSMELLMGNNKLLCENCTKNkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKRFHQAGLS 349
Cdd:cd02674    82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK-------------------RKATKKLTISRLPKVLIIHLKRFSFSRGS 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 350 LRKVNRHVDFPL-MLDLAPFCSATCKNASvgdkVLYGLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglk 428
Cdd:cd02674   143 TRKLTTPVTFPLnDLDLTPYVDTRSFTGP----FKYDLYAVVNHYGSLNGGHYTAYCK---------------------- 196
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1034651950 429 aadNESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 465
Cdd:cd02674   197 ---NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
273-464 1.70e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 114.78  E-value: 1.70e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 273 SIQSCLYQFTSMELLmGNNKLLCENCtknkqkyqeetsfaekkveGVYTNARKQLLISAVPAVLILHLKRF-HQAGLSLR 351
Cdd:cd02660   177 TLSDCLDRFTRPEKL-GDFAYKCSGC-------------------GSTQEATKQLSIKKLPPVLCFQLKRFeHSLNKTSR 236
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 352 KVNRHVDFPLMLDLAPFCSATC-----KNASVGDKVlYGLYGIVEHSGSMREGHYTAYVKVRTpsrklsehntkkknvpg 426
Cdd:cd02660   237 KIDTYVQFPLELNMTPYTSSSIgdtqdSNSLDPDYT-YDLFAVVVHKGTLDTGHYTAYCRQGD----------------- 298
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1034651950 427 lkaadnesaGQWVHVSDTYLQVVPESRALSAQAYLLFY 464
Cdd:cd02660   299 ---------GQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
273-467 3.85e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 91.16  E-value: 3.85e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 273 SIQSCLYQFTSMELLMGNNKLLCENCtknkqkyqeetsfaEKKVEgvytnARKQLLISAVPAVLILHLKRFHQAGLSLR- 351
Cdd:cd02659   152 NLEESLDAYVQGETLEGDNKYFCEKC--------------GKKVD-----AEKGVCFKKLPPVLTLQLKRFEFDFETMMr 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 352 -KVNRHVDFPLMLDLAPFCSATCKNASVGDKV------LYGLYGIVEHSGSMREGHYTAYVKVRTPSR----------KL 414
Cdd:cd02659   213 iKINDRFEFPLELDMEPYTEKGLAKKEGDSEKkdsesyIYELHGVLVHSGDAHGGHYYSYIKDRDDGKwykfnddvvtPF 292
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034651950 415 SEHNTKKKNVPGlkaadnesagqwvHVSDTYLQVVPESRALSAQAYLLFYERV 467
Cdd:cd02659   293 DPNDAEEECFGG-------------EETQKTYDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-465 1.74e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 81.64  E-value: 1.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 324 RKQLLISAVPAVLILHLKR--FHQAGLSLRKvNRHVDFPLMLDlapfcsatcknasvgdKVLYGLYGIVEHSGSMREGHY 401
Cdd:cd02662   118 RCQTVIVRLPQILCIHLSRsvFDGRGTSTKN-SCKVSFPERLP----------------KVLYRLRAVVVHYGSHSSGHY 180
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034651950 402 TAYVKVRTPSRKLSEHNTKKknvpgLKAADNESAGQWVHVSDTYLQVVPESRAL-SAQAYLLFYE 465
Cdd:cd02662   181 VCYRRKPLFSKDKEPGSFVR-----MREGPSSTSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
4-466 2.40e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 84.93  E-value: 2.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950   4 IDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERV-SKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAK 82
Cdd:COG5560   414 ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGK 493
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950  83 KHSSSKDKSQLIHDR---------KCIRKLSS--GETVTYQKNEN-------------LEMNGDSLMFASL---MNSESR 135
Cdd:COG5560   494 LGCFEIKVMCIYYGGnynmlepadKVLLQDIPqtDFVYLYETNDNgievpvvhlriekGYKSKRLFGDPFLqlnVLIKAS 573
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 136 LNESPTDDSEKEASHSESNV-DADSEPSesesaskQTGLFRSSSGsgvqPDGPLYPLSAGKllyTKETDSGDKEmaeais 214
Cdd:COG5560   574 IYDKLVKEFEELLVLVEMKKtDVDLVSE-------QVRLLREESS----PSSWLKLETEID---TKREEQVEEE------ 633
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 215 elrlsstvtgdqdfDRENQPLNIsNNLCFLEGKHLRSYSPQNAFQTLSQSyITTSKECSIQSCLYQFTSMELLMGNNKLL 294
Cdd:COG5560   634 --------------GQMNFNDAV-VISCEWEEKRYLSLFSYDPLWTIREI-GAAERTITLQDCLNEFSKPEQLGLSDSWY 697
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 295 CENCTKNKQkyqeetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLM-LDLAPFCSATc 373
Cdd:COG5560   698 CPGCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV- 757
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 374 knasVGDKVLYGLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglkaadNESAGQWVHVSDTYLQVVPESR 453
Cdd:COG5560   758 ----DDPRLIYDLYAVDNHYGGLSGGHYTAYAR-------------------------NFANNGWYLFDDSRITEVDPED 808
                         490
                  ....*....|...
gi 1034651950 454 ALSAQAYLLFYER 466
Cdd:COG5560   809 SVTSSAYVLFYRR 821
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
270-465 1.41e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 76.96  E-value: 1.41e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 270 KECSIQSCLYQFTSMELLMGNNKLLCENCtknkQKYQEetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGls 349
Cdd:cd02663   145 QNTSITSCLRQFSATETLCGRNKFYCDEC----CSLQE---------------AEKRMKIKKLPKILALHLKRFKYDE-- 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 350 lrKVNRH------VDFPLMLDLapfcSATCKNASVGDKvLYGLYGIVEHSGS--MReGHYTAYVKvrtpsrklsehntkk 421
Cdd:cd02663   204 --QLNRYiklfyrVVFPLELRL----FNTTDDAENPDR-LYELVAVVVHIGGgpNH-GHYVSIVK--------------- 260
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1034651950 422 knvpglkaadneSAGQWV--------HVSDTYLQVVPESRALSAQAYLLFYE 465
Cdd:cd02663   261 ------------SHGGWLlfddetveKIDENAVEEFFGDSPNQATAYVLFYQ 300
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
280-406 3.38e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 73.39  E-value: 3.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 280 QFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvYTNARKQLLISAVPAVLILHLKRFHQAGLS------LRKV 353
Cdd:cd02671   188 QFASVERIVGEDKYFCENCHH-------------------YTEAERSLLFDKLPEVITIHLKCFAANGSEfdcyggLSKV 248
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1034651950 354 NRHVDFPLMLDLAPFCSATcknasvgDKVLYGLYGIVEHSG-SMREGHYTAYVK 406
Cdd:cd02671   249 NTPLLTPLKLSLEEWSTKP-------KNDVYRLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
272-465 4.81e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 72.91  E-value: 4.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 272 CSIQSCLYQFTSMELLMGNNKLLCENCTKNKQkyqeetsfAEKKVEgvytnarkqllISAVPAVLILHLKRFH--QAGLS 349
Cdd:cd02664   134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQD--------AEKEMK-----------VTGAPEYLILTLLRFSydQKTHV 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 350 LRKVNRHVDFPLMLDLaPFCSATCKNASVGDK---------------VLYGLYGIVEHSG-SMREGHYTAYVKVRTPSRK 413
Cdd:cd02664   195 REKIMDNVSINEVLSL-PVRVESKSSESPLEKkeeesgddgelvtrqVHYRLYAVVVHSGySSESGHYFTYARDQTDADS 273
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034651950 414 lsehnTKKKNVPGLKAADNESAGQWVHVSDTYlqvVPESRALSAQ----------AYLLFYE 465
Cdd:cd02664   274 -----TGQECPEPKDAEENDESKNWYLFNDSR---VTFSSFESVQnvtsrfpkdtPYILFYE 327
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
241-406 2.36e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 70.91  E-value: 2.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 241 LCFLEGKHLRSYSP--QNAFQTLSQ---SYITTSKEC---------------------SIQSCLYQFTSMELLMGNNKLL 294
Cdd:cd02668    99 LSLLEAKLSKSKNPdlKNIVQDLFRgeySYVTQCSKCgresslpskfyelelqlkghkTLEECIDEFLKEEQLTGDNQYF 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 295 CENCTKNkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKR--FHQAGLSLRKVNRHVDFPLMLDLAPFCSAT 372
Cdd:cd02668   179 CESCNSK-------------------TDATRRIRLTTLPPTLNFQLLRfvFDRKTGAKKKLNASISFPEILDMGEYLAES 239
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1034651950 373 CKNASVgdkvlYGLYGIVEHSG-SMREGHYTAYVK 406
Cdd:cd02668   240 DEGSYV-----YELSGVLIHQGvSAYSGHYIAHIK 269
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2-41 1.08e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 68.18  E-value: 1.08e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEE 41
Cdd:cd02667    67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
273-406 3.42e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 68.74  E-value: 3.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950  273 SIQSCLYQFTSMELLMGNNKLLCEnctknKQKYQEetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLS--L 350
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAE-----KHGLQD---------------AKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034651950  351 RKVNRHVDFPLMLDLAPFCSATCKNASVGDKVlYGLYGIVEHSGSMREGHYTAYVK 406
Cdd:COG5077    399 VKINDRYEFPLEIDLLPFLDRDADKSENSDAV-YVLYGVLVHSGDLHEGHYYALLK 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
298-466 2.12e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 64.44  E-value: 2.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 298 CTKNKQKYQ--EETSFAEKKVEGVYTNARKQLLISAV--PAVLILHLKRFHQAGlSLRKVNRHVDFPLMLDLAPfcsatC 373
Cdd:COG5533   141 EFIDNMEELvdDETGVKAKENEELEVQAKQEYEVSFVklPKILTIQLKRFANLG-GNQKIDTEVDEKFELPVKH-----D 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 374 KNASVGDKVLYGLYGIVEHSGSMREGHYTAYVKVRtpsrklsehntkkknvpglkaadnesaGQWVHVSDTYLQVVPESR 453
Cdd:COG5533   215 QILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKKG---------------------------GKWEKANDSDVTPVSEEE 267
                         170
                  ....*....|....*.
gi 1034651950 454 AL---SAQAYLLFYER 466
Cdd:COG5533   268 AInekAKNAYLYFYER 283
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
302-421 8.29e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 62.73  E-value: 8.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 302 KQKYQEETsfaEKKVEGVYTNA--RKQLLISAVPAVLILHLKRFHQAGLSLR--KVNRHVDFPLMLDLAPFCSATCknas 377
Cdd:cd02657   167 KKGLEEEI---EKHSPTLGRDAiyTKTSRISRLPKYLTVQFVRFFWKRDIQKkaKILRKVKFPFELDLYELCTPSG---- 239
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1034651950 378 vgdkvLYGLYGIVEHSG-SMREGHYTAYVKVRTPSR-------KLSEHNTKK 421
Cdd:cd02657   240 -----YYELVAVITHQGrSADSGHYVAWVRRKNDGKwikfdddKVSEVTEED 286
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
3-46 3.34e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 51.99  E-value: 3.34e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1034651950   3 FIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERVSKP 46
Cdd:cd02660   122 IIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSW 165
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
311-465 2.32e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 49.24  E-value: 2.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 311 FAEKKVE------GVYTNARKQLLISAVPAVLILHLKRFH-QAGLSLRKVNRHVDFPLMLDLAPfcsatcknasvgdkvl 383
Cdd:cd02658   188 FAPETIEdfcstcKEKTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK---------------- 251
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 384 YGLYGIVEHSG-SMREGHYTAYVKvrtpsrklsehntkkknvpglKAADNEsaGQWVHVSDTYLQVVPESRALSAQAYLL 462
Cdd:cd02658   252 YELIAFISHKGtSVHSGHYVAHIK---------------------KEIDGE--GKWVLFNDEKVVASQDPPEMKKLGYIY 308

                  ...
gi 1034651950 463 FYE 465
Cdd:cd02658   309 FYQ 311
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2-46 6.33e-06

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 47.28  E-value: 6.33e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERVSKP 46
Cdd:cd02674    38 SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAP 82
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
329-465 5.32e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 44.44  E-value: 5.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 329 ISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPF----------CSATCKNASVGD-------KVLYGLYGIVE 391
Cdd:cd02670    95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFvaddpracskCQLECRVCYDDKdfsptcgKFKLSLCSAVC 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034651950 392 HSGSMRE-GHYTAYVKVrtpsrklsehNTKKKNVPGLKAADNesagQWVHVSD-------TYLQVVPESRALSaQAYLLF 463
Cdd:cd02670   175 HRGTSLEtGHYVAFVRY----------GSYSLTETDNEAYNA----QWVFFDDmadrdgvSNGFNIPAARLLE-DPYMLF 239

                  ..
gi 1034651950 464 YE 465
Cdd:cd02670   240 YQ 241
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
2-40 1.56e-04

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 43.59  E-value: 1.56e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIE 40
Cdd:pfam00443 116 SLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPG 154
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2-45 4.47e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 39.11  E-value: 4.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPIIEERVSK 45
Cdd:cd02671   121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2-38 9.37e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 38.03  E-value: 9.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1034651950   2 NFIDRIFIGELTSTVMCEECANISTVKDPFIDISLPI 38
Cdd:cd02661   122 TLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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