|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC144C |
pfam14915 |
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ... |
837-1139 |
2.92e-140 |
|
CCDC144C protein coiled-coil region; This family includes the human protein CCDC144C and the ankyrin repeat domain-containing protein 26-like 1 found in eukaryotes. Its function remains unknown, however, it is known to contain a coiled-coil domain which corresponds to this region. The ankyrin repeat which features in this protein is a common amino acid motif.
Pssm-ID: 464371 [Multi-domain] Cd Length: 304 Bit Score: 431.72 E-value: 2.92e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 837 DCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTETILQYSGQLNNLTAENKILNSELE 916
Cdd:pfam14915 1 NCMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKTLKLNEETLTKTVFQYNGQLNVLKAENTMLNSKLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 917 NGKQNQERLEIEMESYRCRLAAAVRDCDQSQTA-RDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKI 995
Cdd:pfam14915 81 NEKQNKERLETEVESYRSRLAAAIQDHEQSQTSkRDLELAFQRERDEWLRLQDKMNFDVSNLRDENEILSQQLSKAESKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 996 NSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDA 1075
Cdd:pfam14915 161 NSLENELHRTRDALREKTLLLESVQRDLSQAQCQKKELEHMYQNEQDKVNKYIGKQESLEERLAQLQSENMLLRQQLEDA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034602354 1076 HKKANSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGR 1139
Cdd:pfam14915 241 QNKADAKEKTVIDIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEKAER 304
|
|
| DUF3496 |
pfam12001 |
Domain of unknown function (DUF3496); This presumed domain is functionally uncharacterized. ... |
1306-1416 |
9.13e-48 |
|
Domain of unknown function (DUF3496); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Pssm-ID: 463425 [Multi-domain] Cd Length: 109 Bit Score: 165.99 E-value: 9.13e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1306 KTQMELTIKDLESEISRIKTSQADFNKTELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQtrSRSLFTA 1385
Cdd:pfam12001 1 RSQMELRIKDLESELSKMKTSQEDSNKIELEKYKQLYLEELKVRKSLSNKLNKTNERLAEVSTKLLVEKQQ--NRSLLST 78
|
90 100 110
....*....|....*....|....*....|.
gi 1034602354 1386 YATRPVLESPCVGNLNDSEGLNRKHIPRKKR 1416
Cdd:pfam12001 79 LTTRPVLESPCVGNLNNSLVLNRNFIPRENL 109
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
746-1148 |
8.82e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 8.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 746 EEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSE-EQDARILQDQILTSKQ--KELEMARKKMNSE 822
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEiEKEIEQLEQEEEKLKErlEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 823 ISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQkekkyfEDIEAVKEKNDNLQKIIKLNEETLTETilqySGQLN 902
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH------SRIPEIQAELSKLEEEVSRIEARLREI----EQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 903 NLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDcdqsqtARDLKLDFQRTRQEWVRLHDKMKvdmsGLQAKNE 982
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK------KEELEEELEELEAALRDLESRLG----DLKKERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 983 ILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKEtEQMYQIEQSKLKKYIAKQESVEERLSQLQ 1062
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1063 SENMLLRQQLDdahkkansqektsstiqdqfhsaaknlqaESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKagRKVV 1142
Cdd:TIGR02169 972 PVNMLAIQEYE-----------------------------EVLKRLDELKEKRAKLEEERKAILERIEEYEKKK--REVF 1020
|
....*.
gi 1034602354 1143 MREFQQ 1148
Cdd:TIGR02169 1021 MEAFEA 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
482-1352 |
2.73e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 482 YKSLKPKLENLsslppdsDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKEDVQLHKDVEEEMEKHRSNSTELSGTL 561
Cdd:TIGR02168 215 YKELKAELREL-------ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 562 TDGTTVGNDDDGLNQQI----PRKENGEHDRPADKTSNEKNEVKNQIYpEADFADSMEPSEIASEDCElshsvyeNFMLL 637
Cdd:TIGR02168 288 KELYALANEISRLEQQKqilrERLANLERQLEELEAQLEELESKLDEL-AEELAELEEKLEELKEELE-------SLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 638 IEQLRMEYKDSASLPRIQDtfclcEHLLKLKNnhcdqltvKLKQMENMVSVLQNELSETKKTKLQLELQkiewekelydl 717
Cdd:TIGR02168 360 LEELEAELEELESRLEELE-----EQLETLRS--------KVAQLELQIASLNNEIERLEARLERLEDR----------- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 718 rlalkQENEEKRNADMLYNKDSEQLRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDA 797
Cdd:TIGR02168 416 -----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 798 RILQDQILTSKQKELEMARKKMN--SEISHRHQKEKDLFHEDCMLQEEI-ALLRLEIDTIknqNKQKEKKYFEDIEAVKE 874
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKnqSGLSGILGVLSELISVDEGYEAAIeAALGGRLQAV---VVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 875 KNDNLQKIIKLNeeTLTETILQYSGqLNNLTAENKILNSELENGKQNqERLEIEMESyrcrLAAAVRDCDQSQTARDLK- 953
Cdd:TIGR02168 568 NELGRVTFLPLD--SIKGTEIQGND-REILKNIEGFLGVAKDLVKFD-PKLRKALSY----LLGGVLVVDDLDNALELAk 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 954 ----------LDFQRTRQEWVRLHDKMKVDMSGLQAKNEI--LSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQR 1021
Cdd:TIGR02168 640 klrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIeeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1022 DLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQ 1101
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1102 AeSEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEAT-SRCHINLDETQDSKKKL 1180
Cdd:TIGR02168 800 A-LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELIEELESELEAL 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1181 GQIRSEI---------DLTEAQETVpsrclhLDAENEVLQLQQtlfSMKAIQKQCETLQKNKKQLKQEVVNLKSY-MERN 1250
Cdd:TIGR02168 879 LNERASLeealallrsELEELSEEL------RELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDNLQERlSEEY 949
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1251 MLERGKAEWHKLLIE------ERARKEIEEKLNE-------AILTLQKQAAvSHEQLVQLREDNTTSIKTqmeltikdLE 1317
Cdd:TIGR02168 950 SLTLEEAEALENKIEddeeeaRRRLKRLENKIKElgpvnlaAIEEYEELKE-RYDFLTAQKEDLTEAKET--------LE 1020
|
890 900 910
....*....|....*....|....*....|....*
gi 1034602354 1318 SEISRIktsqadfNKTELERYKELYleeVKVRESL 1352
Cdd:TIGR02168 1021 EAIEEI-------DREARERFKDTF---DQVNENF 1045
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
674-1365 |
4.53e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 4.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 674 QLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKrnADMLYNKDSEQLRIKEEEcgkvv 753
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL--EELKEELESLEAELEELE----- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 754 ETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSE--------EQDARILQDQILTSKQKELEMARKKMNSEISH 825
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERlearlerlEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 826 RHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKY------FEDIEAVKEKNDNLQKIIK--LNEETLTETILQY 897
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarLDSLERLQENLEGFSEGVKalLKNQSGLSGILGV 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 898 SGQLNNLTAE-------------NKILNSELENGKQNQERLEiEMESYRCRLAAAVRDCDQSQTARDLKL-----DFQRT 959
Cdd:TIGR02168 525 LSELISVDEGyeaaieaalggrlQAVVVENLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREIlknieGFLGV 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 960 RQEWVRLHDKMKVDMSG----------LQAKNEILseKLSNAESKINSLQIQLHNTRDAL-----GRESLILERvQRDLS 1024
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYllggvlvvddLDNALELA--KKLRPGYRIVTLDGDLVRPGGVItggsaKTNSSILER-RREIE 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1025 QTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQfhsaaknlQAES 1104
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER--------IAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1105 EKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTdllkqqptseatsrchinldetqdskkklgQIR 1184
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK------------------------------ALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1185 SEIDLTEAQETVpsrcLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmLERGKAEWHK--- 1261
Cdd:TIGR02168 803 EALDELRAELTL----LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE--LEELIEELESele 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1262 -LLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLRE--DNTTSIKTQMELTIKDLESEISRIKTSQADFNKTELERY 1338
Cdd:TIGR02168 877 aLLNERASLEEALALLRSELEELSEELRELESKRSELRRelEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
730 740
....*....|....*....|....*..
gi 1034602354 1339 KELYLEEVKVRESLSNELSRTNEMIAE 1365
Cdd:TIGR02168 957 EALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
665-1380 |
1.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 665 LKLKNNHCDQLTVKLKQMENMV-------SVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNK 737
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELeeltaelQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 738 DSEQLRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLvVQERNDAQKQLSEEQDARI--LQDQILT--SKQKELE 813
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLeeLEEQLETlrSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 814 MARKKMNSEISHRHQKEKDLFHEDCMLQEEI-----ALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEE 888
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIeellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 889 tLTETILQYSGQLNNLTAENKILNSELENG----------KQNQERLE---------IEMES-YRCRLAAAVRD------ 942
Cdd:TIGR02168 473 -AEQALDAAERELAQLQARLDSLERLQENLegfsegvkalLKNQSGLSgilgvlselISVDEgYEAAIEAALGGrlqavv 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 943 CDQSQTARD---------------LKLD--------------------FQRTRQEWVRLHDKMKVDMSG----------L 977
Cdd:TIGR02168 552 VENLNAAKKaiaflkqnelgrvtfLPLDsikgteiqgndreilkniegFLGVAKDLVKFDPKLRKALSYllggvlvvddL 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 978 QAKNEILseKLSNAESKINSLQIQLHNTRDAL-----GRESLILERvQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQE 1052
Cdd:TIGR02168 632 DNALELA--KKLRPGYRIVTLDGDLVRPGGVItggsaKTNSSILER-RREIEELEEKIEELEEKIAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1053 SVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQfhsaaknlQAESEKQILSLQEKNKELMDEYNHLKERMDQC 1132
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER--------IAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1133 EKEKAGRKVVMREFQQEWTdllkqqptseatsrchinldetqdskkklgQIRSEIDLTEAQETVpsrcLHLDAENEVLQL 1212
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELK------------------------------ALREALDELRAELTL----LNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1213 QQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmlergkaewhklliEERARKEIEEKLNEailtLQKQAAVSHE 1292
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE---------------LEELIEELESELEA----LLNERASLEE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1293 QLVQLREDNTTSIKTQ--MELTIKDLESEISRIKTSQADFNktelERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQL 1370
Cdd:TIGR02168 888 ALALLRSELEELSEELreLESKRSELRRELEELREKLAQLE----LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI 963
|
810
....*....|
gi 1034602354 1371 TVEKEQTRSR 1380
Cdd:TIGR02168 964 EDDEEEARRR 973
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
835-1377 |
3.34e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 835 HEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLqKIIKLNEETLTETILQYSGQLNNLTAENKILNSE 914
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKI-KILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 915 LENGKQNQERLEIEMESyrcrlaaavrdcdqsqtardlkldFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESK 994
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNK------------------------LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 995 INSLQIQLHNTRDAlgresliLERVQRDLSQTQCQKKETEQMYqieqSKLKKYIAKQESVEERLSQLQSENMLLRQQLDD 1074
Cdd:TIGR04523 168 KEELENELNLLEKE-------KLNIQKNIDKIKNKLLKLELLL----SNLKKKIQKNKSLESQISELKKQNNQLKDNIEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1075 AHKKANSQEKTSSTIQDQFhsaaKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLL 1154
Cdd:TIGR04523 237 KQQEINEKTTEISNTQTQL----NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1155 KQQPTSeatsrchiNLDETQDSKKKLGQIRSEI-DLTEAQETVPSRCLHLDAENEVLQLQqtlfsMKAIQKQCETLQKNK 1233
Cdd:TIGR04523 313 KSELKN--------QEKKLEEIQNQISQNNKIIsQLNEQISQLKKELTNSESENSEKQRE-----LEEKQNEIEKLKKEN 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1234 KQLKQEVVNLKSymERNMLERgkaewhklliEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDNttsikTQMELTI 1313
Cdd:TIGR04523 380 QSYKQEIKNLES--QINDLES----------KIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI-----IKNNSEI 442
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1314 KDLESEISRIKTSQADFN------KTELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQT 1377
Cdd:TIGR04523 443 KDLTNQDSVKELIIKNLDntreslETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
665-1188 |
3.89e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 3.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 665 LKLKNNHCDQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADML------YNKD 738
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLlsnlkkKIQK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 739 SEQLRIK----EEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELem 814
Cdd:TIGR04523 213 NKSLESQiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL-- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 815 arKKMNSEISH-RHQKEKDLFHEdcmlqeeiallrleidtiknqnkqkekkYFEDIEAVKEKNDNLQKIIKLNEET---L 890
Cdd:TIGR04523 291 --NQLKSEISDlNNQKEQDWNKE----------------------------LKSELKNQEKKLEEIQNQISQNNKIisqL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 891 TETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAaavrdcDQSQTARDLKLDFQRTRQEWVRLHDKM 970
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK------NLESQINDLESKIQNQEKLNQQKDEQI 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 971 KV----------DMSGLQAKNEILSEKLSNAESKINSLQIQ---LHNTRDALGRESLILERVQRDLSQTQcqkKETEQMY 1037
Cdd:TIGR04523 415 KKlqqekellekEIERLKETIIKNNSEIKDLTNQDSVKELIiknLDNTRESLETQLKVLSRSINKIKQNL---EQKQKEL 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1038 QIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAES-EKQILSLQEKNK 1116
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlEKEIDEKNKEIE 571
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034602354 1117 ELMDEYNHLKERMDQCEKEkagrkvvMREFQQEWTDLLKQQPTSEAT-SRCHINLDETQDSKKKLGQIRSEID 1188
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQEL-------IDQKEKEKKDLIKEIEEKEKKiSSLEKELEKAKKENEKLSSIIKNIK 637
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
762-1376 |
9.25e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 9.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 762 NLRRL---VKELRTVRNNLDLVVQ--ERNDAQKQLSEEQDARILQDQI--LTSKQKELEMARKKMNSEIsHRHQKEKDlf 834
Cdd:TIGR02168 187 NLDRLediLNELERQLKSLERQAEkaERYKELKAELRELELALLVLRLeeLREELEELQEELKEAEEEL-EELTAELQ-- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 835 hedcMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQkIIKLNEETLTETILQYSGQLNNLTAENKILNSE 914
Cdd:TIGR02168 264 ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 915 LENGKQNQERLEIEMESYRCRLAAavrdcdqsqtARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESK 994
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEE----------LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 995 INSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQskLKKYIAKQESVEERLSQLQSENMLLRQQLDD 1074
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE--LERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1075 AHKKANSQEKTSSTIQDQFHSAAKNLQAESEK--------QILSLQEK--------------------NKELMDEYNHLK 1126
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlsELISVDEGyeaaieaalggrlqavvvenLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1127 E--------------RMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEAT-----SRCHI--NLDETQDSKKKLGQ--- 1182
Cdd:TIGR02168 567 QnelgrvtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllGGVLVvdDLDNALELAKKLRPgyr 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1183 --------IRSEIDLTEAQETVPSRCLHLDAENEVLQLQQTLF--SMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmL 1252
Cdd:TIGR02168 647 ivtldgdlVRPGGVITGGSAKTNSSILERRREIEELEEKIEELeeKIAELEKALAELRKELEELEEELEQLRKELEE--L 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1253 ERGKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDNTTSIKT------QMELTIKDLESEISRIKTS 1326
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaeaeieELEAQIEQLKEELKALREA 804
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1327 QADFNKtELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQ 1376
Cdd:TIGR02168 805 LDELRA-ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
679-1347 |
3.41e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.11 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 679 LKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENE--EKRNADMLY-----NKDSEQLRIKEEECGK 751
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDkiNKLNSDLSKinseiKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 752 VVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSE-EQDARILQDQILtSKQKELEMAR-------------- 816
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEElENELNLLEKEKL-NIQKNIDKIKnkllklelllsnlk 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 817 ------KKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETl 890
Cdd:TIGR04523 208 kkiqknKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKEL- 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 891 tetilqySGQLNNLTAENKILNSELENGKQNQERLEIEmesyrcrlaaavrdcDQSQTARDLKLDFQRTRQEWVRLHDKM 970
Cdd:TIGR04523 287 -------EKQLNQLKSEISDLNNQKEQDWNKELKSELK---------------NQEKKLEEIQNQISQNNKIISQLNEQI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 971 kvdmsglqaknEILSEKLSNAESKINSLQIQLHNTRDAlgresliLERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAK 1050
Cdd:TIGR04523 345 -----------SQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1051 QESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQfhSAAKNLQAESEKQILSLQEKN-KELMDEYNHLKERM 1129
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ--DSVKELIIKNLDNTRESLETQlKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1130 DQCEKEKAGRKVVMREFQQEWTDLlkQQPTSEATSRCHINLDETQDSKKKLGQIRSEI-DLTEAQETVPSRCLHLDAENE 1208
Cdd:TIGR04523 485 EQKQKELKSKEKELKKLNEEKKEL--EEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLEDELNKDDFELKKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1209 VLQLQQTLFSMKAIQKQCETLQKNK----KQLKQEVVNLKSYMERNMLERGKAEWHKLLIEERARK--EIEEKLNEAILT 1282
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKqeliDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKlsSIIKNIKSKKNK 642
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034602354 1283 LQKQAAVSHEQLvqlreDNTTSIKTQMELTIKDLESEISRIKTSQADFNKTELERYKELYLEEVK 1347
Cdd:TIGR04523 643 LKQEVKQIKETI-----KEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIR 702
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
739-1380 |
8.24e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.16 E-value: 8.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 739 SEQLRIkEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDAriLQDQILTSKQKELEMArkk 818
Cdd:pfam12128 269 SDETLI-ASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEA--LEDQHGAFLDADIETA--- 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 819 mnseisHRHQKEKDLFHEDCMLQEEiallrlEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTETI-LQY 897
Cdd:pfam12128 343 ------AADQEQLPSWQSELENLEE------RLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARdRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 898 SGQLNNLTAENKILNSELENGKQNqerLEIEMESYRCRLAAAVRDCDQSQTARDLKLDfQRTRQEWVrlhDKMKvdmsgl 977
Cdd:pfam12128 411 AVAEDDLQALESELREQLEAGKLE---FNEEEYRLKSRLGELKLRLNQATATPELLLQ-LENFDERI---ERAR------ 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 978 qakneilsEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESV-EE 1056
Cdd:pfam12128 478 --------EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDwEQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1057 RLSQLQSENMLLRQQLDDAHKKANSQEKTSstiqdqFHSAAKNLQAESEKQILSLQEKnkelmdeynhLKERMDQCEKek 1136
Cdd:pfam12128 550 SIGKVISPELLHRTDLDPEVWDGSVGGELN------LYGVKLDLKRIDVPEWAASEEE----------LRERLDKAEE-- 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1137 agrkvvmrefqqewtDLLKQQPTSEATSrchinldetqdskKKLGQIRSEIDLTEAQETVPSRCLhldaENEVLQLQQTL 1216
Cdd:pfam12128 612 ---------------ALQSAREKQAAAE-------------EQLVQANGELEKASREETFARTAL----KNARLDLRRLF 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1217 FSMKAIQKQCETLQKNKKQLKQEVVNlKSYMERNMLERGKAEW----------------HKLLIEERARKEIEEKLNEAI 1280
Cdd:pfam12128 660 DEKQSEKDKKNKALAERKDSANERLN-SLEAQLKQLDKKHQAWleeqkeqkreartekqAYWQVVEGALDAQLALLKAAI 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1281 LTLQKQAAVsheQLVQLREDNTTSIKTQM--ELTIKDLESEISRI--KTSQADFNKTELERYKELYLEEVKV-RESLSNE 1355
Cdd:pfam12128 739 AARRSGAKA---ELKALETWYKRDLASLGvdPDVIAKLKREIRTLerKIERIAVRRQEVLRYFDWYQETWLQrRPRLATQ 815
|
650 660
....*....|....*....|....*
gi 1034602354 1356 LSRTNEMIAEVSTQLTVEKEQTRSR 1380
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADTKLR 840
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
781-1379 |
1.18e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 781 VQERNDAQKQLSEEQDARILQDQI-LTSKQKELEMARKKMNSEISHRHQKEKDLFHEdcmLQEEIallrleidtiknqnk 859
Cdd:pfam15921 90 LQRRLNESNELHEKQKFYLRQSVIdLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTV--------------- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 860 qkekkyfEDIEAVKEKNDNLQKIIKLNEETLTETILQYSGQLNNLtaENKILNSELENGKQNQERLEIEMESYRcRLAAA 939
Cdd:pfam15921 152 -------HELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI--RSILVDFEEASGKKIYEHDSMSTMHFR-SLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 940 VrdcdqSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEIL----------------------SEKLSNAESKINS 997
Cdd:pfam15921 222 I-----SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlqqhqdrieqliseheveitglTEKASSARSQANS 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 998 LQIQLHntrdalgresLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKyiaKQESVEERLSQLQSENMLlrqqlddahk 1077
Cdd:pfam15921 297 IQSQLE----------IIQEQARNQNSMYMRQLSDLESTVSQLRSELRE---AKRMYEDKIEELEKQLVL---------- 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1078 kANSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDE-----------------YNHLKERMDQCEKEKAGRK 1140
Cdd:pfam15921 354 -ANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEkeqnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1141 VVMREFQQEWTDLLKQQPTS--------EATSRCHINLDETQDSKKKLGQirseiDLTEAQETVPSRclHLDAENEVLQL 1212
Cdd:pfam15921 433 ALLKAMKSECQGQMERQMAAiqgkneslEKVSSLTAQLESTKEMLRKVVE-----ELTAKKMTLESS--ERTVSDLTASL 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1213 QQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSymERNMLERGKAEWHKLLIEERARKEIEEKLNEAILTLQkqaavshe 1292
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKN--EGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMT-------- 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1293 QLVQLREDNTTSI---KTQMELTIKDLESEISRIKT--SQADFNKTELE-RYKELYLEEVKVRESLSNELsRTNEMIAEV 1366
Cdd:pfam15921 576 QLVGQHGRTAGAMqveKAQLEKEINDRRLELQEFKIlkDKKDAKIRELEaRVSDLELEKVKLVNAGSERL-RAVKDIKQE 654
|
650
....*....|...
gi 1034602354 1367 STQLTVEKEQTRS 1379
Cdd:pfam15921 655 RDQLLNEVKTSRN 667
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
674-1380 |
1.57e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 674 QLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQEN-EEKRNADmlyNKDSEQLRIKEEECGKV 752
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKlEELRLEV---SELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 753 VETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMAR---KKMNSEISHRHQK 829
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEaelEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 830 EKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEkkyfEDIEAVKEKNDNLQKIIKLNEETLTETILQYSGQ--------L 901
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLE----ARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleeeL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 902 NNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWV-----------RLHDKM 970
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknqsglsgilgVLSELI 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 971 KVDMSGLQAKNEILSEKLSNAESKINSLQIQL--HNTRDALGRESLILERVQRDlsqtqcQKKETEQMYQIEQSKLKKYI 1048
Cdd:TIGR02168 530 SVDEGYEAAIEAALGGRLQAVVVENLNAAKKAiaFLKQNELGRVTFLPLDSIKG------TEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1049 AKqeSVEERLSQLQS--ENML--------LRQQLDDAHKkaNSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKEL 1118
Cdd:TIGR02168 604 AK--DLVKFDPKLRKalSYLLggvlvvddLDNALELAKK--LRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1119 mdeynhlkermDQCEKEKAGRKVVMREFQQEWTDLLKQQptSEATSRCHINLDETQDSKKKLGQIRSEID-LTEAQETVP 1197
Cdd:TIGR02168 680 -----------EELEEKIEELEEKIAELEKALAELRKEL--EELEEELEQLRKELEELSRQISALRKDLArLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1198 SRCLHLDAENEVLQLQqtlfsMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGKAewhkllieeraRKEIEEKln 1277
Cdd:TIGR02168 747 ERIAQLSKELTELEAE-----IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL-----------REALDEL-- 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1278 EAILTLQKQAAVSHEQLVQLREDNTTSIKTQME---LTIKDLESEISRIKTSQADF--NKTELERYKELYLEEVKVRESL 1352
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEdleEQIEELSEDIESLAAEIEELeeLIEELESELEALLNERASLEEA 888
|
730 740
....*....|....*....|....*...
gi 1034602354 1353 SNELSRtnEMIAEVSTQLTVEKEQTRSR 1380
Cdd:TIGR02168 889 LALLRS--ELEELSEELRELESKRSELR 914
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
674-1359 |
3.91e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.80 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 674 QLTVKLKQMENMVSVLQNEL-------SETKKTKLQLELQKIEWEKELYDLRLALkqENEEKRNADMLYNKDSEQLRIKE 746
Cdd:pfam01576 30 ELEKKHQQLCEEKNALQEQLqaetelcAEAEEMRARLAARKQELEEILHELESRL--EEEEERSQQLQNEKKKMQQHIQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 747 EECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQErnDAQKQLSEEqdARILQDQI--LTS-------KQKELEMARK 817
Cdd:pfam01576 108 LEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLE--DQNSKLSKE--RKLLEERIseFTSnlaeeeeKAKSLSKLKN 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 818 K---MNSEISHRHQKE-----------KDLFHEDCMLQEEIALLRLEIDTIKNqnkqkekkyfedieAVKEKNDNLQKII 883
Cdd:pfam01576 184 KheaMISDLEERLKKEekgrqelekakRKLEGESTDLQEQIAELQAQIAELRA--------------QLAKKEEELQAAL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 884 -KLNEETLTETILQYSgqLNNLTAENKILNSELENGKQNQER-------LEIEMESYRCRLAAAVRDCDQSQTARDLK-- 953
Cdd:pfam01576 250 aRLEEETAQKNNALKK--IRELEAQISELQEDLESERAARNKaekqrrdLGEELEALKTELEDTLDTTAAQQELRSKReq 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 954 --LDFQRTRQEWVRLHDKMKVDMSGLQAKN-EILSEKLSNAE-SKINslqiqLHNTRDALGRESLILERVQRDLSQ---- 1025
Cdd:pfam01576 328 evTELKKALEEETRSHEAQLQEMRQKHTQAlEELTEQLEQAKrNKAN-----LEKAKQALESENAELQAELRTLQQakqd 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1026 TQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESe 1105
Cdd:pfam01576 403 SEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEET- 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1106 KQILSLQEKNKELMDEYNHLKERMdqcEKEKAGRKVVMREFQQewtdlLKQQptseatsrchinldeTQDSKKKLGQIRS 1185
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLST-----LQAQ---------------LSDMKKKLEEDAG 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1186 EIDLTEAQEtvpsRCLHLDAENEVLQLQQTlfsmkaiQKQCETLQKNKKQLKQEVVNLKSYMERNM-----LERGKAEWH 1260
Cdd:pfam01576 539 TLEALEEGK----KRLQRELEALTQQLEEK-------AAAYDKLEKTKNRLQQELDDLLVDLDHQRqlvsnLEKKQKKFD 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1261 KLLIEERA----------RKEIEEKLNEAiltlqKQAAVSHEQlvqlreDNTTSIKTQMELTIKDLESEISRIKTSQADF 1330
Cdd:pfam01576 608 QMLAEEKAisaryaeerdRAEAEAREKET-----RALSLARAL------EEALEAKEELERTNKQLRAEMEDLVSSKDDV 676
|
730 740 750
....*....|....*....|....*....|....*
gi 1034602354 1331 NKT--ELERYK---ELYLEEVKVR-ESLSNELSRT 1359
Cdd:pfam01576 677 GKNvhELERSKralEQQVEEMKTQlEELEDELQAT 711
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
665-1376 |
8.59e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 8.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 665 LKLKNNHCDQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKR---NADMLYNKDSEQ 741
Cdd:pfam02463 215 LKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKekkLQEEELKLLAKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 742 LRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNS 821
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 822 EISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKekkyfediEAVKEKNDNLQKIIKLNEETLTETILQYSGQL 901
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA--------RQLEDLLKEEKKEELEILEEEEESIELKQGKL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 902 NNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSqtarDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKN 981
Cdd:pfam02463 447 TEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS----RQKLEERSQKESKARSGLKVLLALIKDGVGG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 982 EILSEKLSNAE-SKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQ 1060
Cdd:pfam02463 523 RIISAHGRLGDlGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1061 LQSENMLLRQQLDDAHKKANS--QEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAG 1138
Cdd:pfam02463 603 LNLAQLDKATLEADEDDKRAKvvEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQ 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1139 RKVVM-----REFQQEWTDLLKQQPTSEATSRCHINLDETQDSKKKLGQIRSEIDLTEAQETVpsrclhldAENEVLQLQ 1213
Cdd:pfam02463 683 EKAESelakeEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI--------DEEEEEEEK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1214 QTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQ 1293
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1294 LVQLREDNTTSIKTQMELTIKDLESEISRIKTSQadfNKTELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVE 1373
Cdd:pfam02463 835 LEELALELKEEQKLEKLAEEELERLEEEITKEEL---LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL 911
|
...
gi 1034602354 1374 KEQ 1376
Cdd:pfam02463 912 LEE 914
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
890-1376 |
9.97e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 9.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 890 LTETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVrdcdqsQTARDLKLDFQRTRQEWVRLHDK 969
Cdd:pfam05483 259 LTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSM------STQKALEEDLQIATKTICQLTEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 970 MKVDMSGLQAKNEILSEKLSNAESKINSL-------QIQLHNTRDALGRESLILERVQRDLSQ----TQCQKKETEQMYQ 1038
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLeellrteQQRLEKNEDQLKIITMELQKKSSELEEmtkfKNNKEVELEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1039 I--EQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESEKQILslqeKNK 1116
Cdd:pfam05483 413 IlaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKL----KNI 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1117 ELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTS----EATSRCHINL-DETQDSKKKLGQIRSEIDLTE 1191
Cdd:pfam05483 489 ELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMlkqiENLEEKEMNLrDELESVREEFIQKGDEVKCKL 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1192 AQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQE--VVNLKSYMERNMLERGKAEWHKLLIEERAR 1269
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEnkALKKKGSAENKQLNAYEIKVNKLELELASA 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1270 KEieeKLNEAILTLQKQ---AAVSHEQLVQLREDNTT----SIKTQMELTIK---DLESEISRIKTSQADFNKTELERYK 1339
Cdd:pfam05483 649 KQ---KFEEIIDNYQKEiedKKISEEKLLEEVEKAKAiadeAVKLQKEIDKRcqhKIAEMVALMEKHKHQYDKIIEERDS 725
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1034602354 1340 ELYL------EEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQ 1376
Cdd:pfam05483 726 ELGLyknkeqEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1042-1390 |
1.55e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1042 SKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEK----TSSTIQDQFHSAAKNLQAeSEKQILSLQEKNKE 1117
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEA-LERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1118 LMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKqqptseatsrchinlDETQDSKKKLGQIRSEIDLTEAQETVP 1197
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---------------EEQLRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1198 SRCLHlDAENEVLQLQ----QTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYME--RNMLERGKAEWHKLLIEERARKE 1271
Cdd:TIGR02169 314 ERELE-DAEERLAKLEaeidKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEdlRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1272 IEEKLNEAILTLQKQAAVSHEQLVQLREDnttsiktqmeltIKDLESEISRIKTSQADFNKTELERYKELYLEE------ 1345
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEE------------LADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleql 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1034602354 1346 VKVRESLSNELSRTNEMIAEVSTQLTvEKEQTRSRSLFTAYATRP 1390
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELS-KLQRELAEAEAQARASEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1001-1375 |
1.58e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1001 QLHNTRDALGRESLILERVQRDLsqtqcqkketeQMYQIEQSKLKKYIAKQEsveeRLSQLQSEnmLLRQQLDDAHKKAN 1080
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQL-----------KSLERQAEKAERYKELKA----ELRELELA--LLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1081 SQEKTSSTIQDQFHSAAKNLQA------ESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLL 1154
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQEleekleELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1155 KQQPTSEatSRCHINLDETQDSKKKLGQIRSEID-----LTEAQETVPSRCLHLDAENEVLQ-----LQQTLFSMKAIQK 1224
Cdd:TIGR02168 323 AQLEELE--SKLDELAEELAELEEKLEELKEELEsleaeLEELEAELEELESRLEELEEQLEtlrskVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1225 QCETLQKNKKQLKQEVVNLKSYMERNMLERGKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDntts 1304
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA---- 476
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034602354 1305 iktqmeltIKDLESEISRIKtSQADFNKTELERYKELYlEEVKvreSLSNELSRTNEMIAEVSTQLTVEKE 1375
Cdd:TIGR02168 477 --------LDAAERELAQLQ-ARLDSLERLQENLEGFS-EGVK---ALLKNQSGLSGILGVLSELISVDEG 534
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
895-1237 |
1.95e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 895 LQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAvrdcdqSQTARDLKLDFQRTRQEwvrlHDKMKVDM 974
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA------SRKIGEIEKEIEQLEQE----EEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 975 SGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQmyqieqSKLKKYIAKQESV 1054
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL------SKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1055 EERLSQLQSENMLLRQQLDDahKKANSQEKTSStIQDQFHSAAKNlQAESEKQILSLQEKNKELMDEYNHLKERMDQCEK 1134
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEK--EIQELQEQRID-LKEQIKSIEKE-IENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1135 EKAGRKVVMREFQQ-----EWTDLLKQQPTSEATSRCHINLDETQDSKKKLGQIRSEIDLTEAQETVPSRCLHLDAENEV 1209
Cdd:TIGR02169 890 ERDELEAQLRELERkieelEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350
....*....|....*....|....*....|....*..
gi 1034602354 1210 L---------QLQQTLFSMKAIQKQCETLQKNKKQLK 1237
Cdd:TIGR02169 970 LepvnmlaiqEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
737-1285 |
9.30e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 9.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 737 KDSEQLRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQ----KEL 812
Cdd:pfam05483 219 EDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKdhltKEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 813 EMARKKMNSEISHRHQKEKDLfhedCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTE 892
Cdd:pfam05483 299 EDIKMSLQRSMSTQKALEEDL----QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 893 TilqySGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKV 972
Cdd:pfam05483 375 N----EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREK 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 973 DMSGLQA-------------------KNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKET 1033
Cdd:pfam05483 451 EIHDLEIqltaiktseehylkevedlKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1034 EQMYQIE--QSKLKKYIAKQESVEERLSQLQSEnmlLRQQLDDAHKKANSQEKTSSTIQDQFhSAAKNLQAESEKQILSL 1111
Cdd:pfam05483 531 RMLKQIEnlEEKEMNLRDELESVREEFIQKGDE---VKCKLDKSEENARSIEYEVLKKEKQM-KILENKCNNLKKQIENK 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1112 QEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDllKQQPTSEATSRCHINLDETQDSKKK-LGQI-RSEIDL 1189
Cdd:pfam05483 607 NKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELAS--AKQKFEEIIDNYQKEIEDKKISEEKlLEEVeKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1190 TEA---QETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQlKQEVVNLKSYME------RNMLERGKAEWh 1260
Cdd:pfam05483 685 DEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNK-EQEQSSAKAALEielsniKAELLSLKKQL- 762
|
570 580
....*....|....*....|....*
gi 1034602354 1261 KLLIEERARKEIEEKLNEAILTLQK 1285
Cdd:pfam05483 763 EIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
906-1194 |
9.47e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 9.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 906 AENKilnseLENGKQNQERLEI---EMESYRCRLAaavRDCDQSQTARDLKLDFQRTRQEWVRLHDK--------MKVDM 974
Cdd:COG1196 177 AERK-----LEATEENLERLEDilgELERQLEPLE---RQAEKAERYRELKEELKELEAELLLLKLReleaeleeLEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 975 SGLQAKNEILSEKLSNAESKINSLQIQLHNTRDAL----GRESLI---LERVQRDLSQTQCQKKETEQMYQIEQSKLKKY 1047
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELeeaqAEEYELlaeLARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1048 IAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFH------SAAKNLQAESEKQILSLQEKNKELMDE 1121
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeaeeelEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034602354 1122 YNHLKERMDQCEKEKAGRKVVMREFQQEwtDLLKQQPTSEATSRCHINLDETQDSKKKLGQIRSEIDLTEAQE 1194
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
687-1274 |
1.15e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 687 SVLQNELSETKKTKLQLELQKIE-WEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKVVETKQQLKWNLRR 765
Cdd:PRK03918 139 AILESDESREKVVRQILGLDDYEnAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 766 LVKELRTVRNN---LDLVVQERNDAQKQL-SEEQDARILQDQIltskqKELEMARKKMNSEISHRHQKEKDLfhedcmlq 841
Cdd:PRK03918 219 LREELEKLEKEvkeLEELKEEIEELEKELeSLEGSKRKLEEKI-----RELEERIEELKKEIEELEEKVKEL-------- 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 842 EEIallrleidtiknqnKQKEKKYFEDIEAVKEKNDNLQKIiklnEETLTetilQYSGQLNNLtaENKIlnSELENGKQN 921
Cdd:PRK03918 286 KEL--------------KEKAEEYIKLSEFYEEYLDELREI----EKRLS----RLEEEINGI--EERI--KELEEKEER 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 922 QERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLH-DKMKVDMSGLQAKNEILSEKLSNAESKINSLQI 1000
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1001 QLHNTRDAL-------------GRE------SLILERVQRDLSQTQCQKKETEQmyqiEQSKLKKYIAKQESV---EERL 1058
Cdd:PRK03918 420 EIKELKKAIeelkkakgkcpvcGRElteehrKELLEEYTAELKRIEKELKEIEE----KERKLRKELRELEKVlkkESEL 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1059 SQLQS--------ENMLLRQQLDDAHKKANSQEKT---SSTIQDQFHSAAKNLQ---------AESEKQILSLQEKNKEL 1118
Cdd:PRK03918 496 IKLKElaeqlkelEEKLKKYNLEELEKKAEEYEKLkekLIKLKGEIKSLKKELEkleelkkklAELEKKLDELEEELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1119 MDEynhLKERMDQCEKEKAGRKVVMREFQQEWTDLLKqqptseATSRCHINLDETQDSKKKLGQIRSEIDLTEAQ----- 1193
Cdd:PRK03918 576 LKE---LEELGFESVEELEERLKELEPFYNEYLELKD------AEKELEREEKELKKLEEELDKAFEELAETEKRleelr 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1194 ------ETVPSRCLHLDAENEVLQLQQTLFSMKA----IQKQCETLQKNKKQLKQEVVNLKSYMER-----NMLE----- 1253
Cdd:PRK03918 647 keleelEKKYSEEEYEELREEYLELSRELAGLRAeleeLEKRREEIKKTLEKLKEELEEREKAKKElekleKALErveel 726
|
650 660
....*....|....*....|.
gi 1034602354 1254 RGKAEWHKLLIEERARKEIEE 1274
Cdd:PRK03918 727 REKVKKYKALLKERALSKVGE 747
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
673-1188 |
2.80e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 673 DQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKV 752
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 753 VETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARI-LQDQILTSKQKELEMARKKMN--SEISHRHQK 829
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeAEEELEELAEELLEALRAAAElaAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 830 EKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTETILQYSgQLNNLTAENK 909
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA-ALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 910 ILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDF-----QRTRQEWVRLHDKMKVDMSGLQAKNEIL 984
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAayeaaLEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 985 SEKLS-------NAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEER 1057
Cdd:COG1196 568 AAKAGratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1058 LSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKA 1137
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1034602354 1138 GRKVVMREFQQEWTDLLKQQPTSEATSRCHINLDEtQDSKKKLGQIRSEID 1188
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDL-EELERELERLEREIE 777
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
683-1225 |
3.50e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 683 ENMVSVLQNELSEtkktklQLELQKIEWEKELYDLRLALkqENEEKRNADMLYNKDS-EQLRIKEEECGKVVETKQQLKW 761
Cdd:pfam12128 414 EDDLQALESELRE------QLEAGKLEFNEEEYRLKSRL--GELKLRLNQATATPELlLQLENFDERIERAREEQEAANA 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 762 NLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDA-RILQDQILTSKQKELEMARKK-----------MNSEISHRHQK 829
Cdd:pfam12128 486 EVERLQSELRQARKRRDQASEALRQASRRLEERQSAlDELELQLFPQAGTLLHFLRKEapdweqsigkvISPELLHRTDL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 830 EKDLFHEDCMLQEEIALLRLEIDTIKNQNkqkekkYFEDIEAVKEKNDNLQKIIKLNEET---LTETILQYSGQLNNLTA 906
Cdd:pfam12128 566 DPEVWDGSVGGELNLYGVKLDLKRIDVPE------WAASEEELRERLDKAEEALQSAREKqaaAEEQLVQANGELEKASR 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 907 ENKILNSELENGKQNQERLEIEMESYRCRLaaavrdcdQSQTARDLKLDFQRTRQewvrLHDKMKVDMSGLQA-KNEILS 985
Cdd:pfam12128 640 EETFARTALKNARLDLRRLFDEKQSEKDKK--------NKALAERKDSANERLNS----LEAQLKQLDKKHQAwLEEQKE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 986 EKLSNAESKINSLQIQLHNTRDALGR--ESLILERVQRDLSQTQCQKKETEQMY-----QIEQSKLKKYIAKQESVEERL 1058
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALlkAAIAARRSGAKAELKALETWYKRDLAslgvdPDVIAKLKREIRTLERKIERI 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1059 SQLQSENMllrqQLDDAHKKANSQEKTSSTIQ-DQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKA 1137
Cdd:pfam12128 788 AVRRQEVL----RYFDWYQETWLQRRPRLATQlSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLR 863
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1138 GRKVVMR---EFQQEWTD-----------------LLKQQPTSEATSRCHINLDETQDSKKKLGQIRSEIDLTEAQETVP 1197
Cdd:pfam12128 864 GLRCEMSklaTLKEDANSeqaqgsigerlaqledlKLKRDYLSESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQN 943
|
570 580
....*....|....*....|....*...
gi 1034602354 1198 SRCLHLDAENEVLQLQQTLFSMKAIQKQ 1225
Cdd:pfam12128 944 DKGIRLLDYRKLVPYLEQWFDVRVPQSI 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
681-1253 |
3.76e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 681 QMENMVSVLQNelsetkKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEEC----GKVVETK 756
Cdd:pfam15921 246 QLEALKSESQN------KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnSMYMRQL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 757 QQLKWNLRRLVKELRTVRNNLDLVVQErndAQKQL----SEEQDARILQDQI------LTSKQKELEMARKKMNSEISHR 826
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEE---LEKQLvlanSELTEARTERDQFsqesgnLDDQLQKLLADLHKREKELSLE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 827 HQKEKDLFHEDCMLQEEIALLRLEIDtiknqnkqkekkyfedieavkEKNDNLQKIIKLNEETLTETILQYSGQLNNLTA 906
Cdd:pfam15921 397 KEQNKRLWDRDTGNSITIDHLRRELD---------------------DRNMEVQRLEALLKAMKSECQGQMERQMAAIQG 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 907 ENKIL------NSELENGKQNQERLEIEMESYRCRLAAAVRD-CDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQ- 978
Cdd:pfam15921 456 KNESLekvsslTAQLESTKEMLRKVVEELTAKKMTLESSERTvSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQh 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 979 AKNEilSEKLSNAESKINSLQIQLHNTRDALGreslILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYI---------- 1048
Cdd:pfam15921 536 LKNE--GDHLRNVQTECEALKLQMAEKDKVIE----ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIndrrlelqef 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1049 --------AKQESVEERLSQLQSENMllrqQLDDAHKKANSQEKTSSTIQDQFHSAAKNlqaeSEKQILSLQEKNKELMD 1120
Cdd:pfam15921 610 kilkdkkdAKIRELEARVSDLELEKV----KLVNAGSERLRAVKDIKQERDQLLNEVKT----SRNELNSLSEDYEVLKR 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1121 EYNHLKERMDQC-EKEKAGRKVVMREFQQEWTDLLKQQPTSEATSRCHINLDETQDSKK-KLGQIRSEIDLTEAQETVPS 1198
Cdd:pfam15921 682 NFRNKSEEMETTtNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRgQIDALQSKIQFLEEAMTNAN 761
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1199 RCLHLDAEnEVLQLQQTLfSMKAIQK-----QCETLQKNKKQLKQEVVNLKSYMERNMLE 1253
Cdd:pfam15921 762 KEKHFLKE-EKNKLSQEL-STVATEKnkmagELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
692-1340 |
4.38e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 692 ELSETKKtKLQLELQKIEWEkelyDLRLALKQENEEKRNADMLYNKDSEQLRIKEEEcgkvvetKQQLKWNLRRLVKELR 771
Cdd:COG1196 217 ELKEELK-ELEAELLLLKLR----ELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 772 TVRNNLDLVVQERNDAQKQLSEEQDARilqdQILTSKQKELEMARKKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEI 851
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERR----RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 852 DTIKNqnkqkekkyfEDIEAVKEKNDNLQKIIKLNEETLTETilqysGQLNNLTAENKILNSELENGKQNQERLEIEMES 931
Cdd:COG1196 361 AEAEE----------ALLEAEAELAEAEEELEELAEELLEAL-----RAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 932 yrcRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGR 1011
Cdd:COG1196 426 ---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1012 ESLILERVQRdLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKT---SST 1088
Cdd:COG1196 503 YEGFLEGVKA-ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1089 IQDQFHSAAKNLQAESEKQILSLQEKNKELMDEY----NHLKERMDQCEKEKAGRkVVMREFQQEWTDLLKQQPTSEATS 1164
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYyvlgDTLLGRTLVAARLEAAL-RRAVTLAGRLREVTLEGEGGSAGG 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1165 RchinldETQDSKKKLGQIRSEIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLK 1244
Cdd:COG1196 661 S------LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1245 SYMERNMLERGKAEwHKLLIEERARKEIEEKLNEAILTLQKQ---------AAVshEQLVQLREDNTTsIKTQMEltikD 1315
Cdd:COG1196 735 EELLEELLEEEELL-EEEALEELPEPPDLEELERELERLEREiealgpvnlLAI--EEYEELEERYDF-LSEQRE----D 806
|
650 660
....*....|....*....|....*
gi 1034602354 1316 LESEISRIKTSQADFNKTELERYKE 1340
Cdd:COG1196 807 LEEARETLEEAIEEIDRETRERFLE 831
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
662-979 |
5.05e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 662 EHLLKLKNnHCDQLTVKLKQMENMVSVLQNELS-------ETKKTKLQLELQKIEWEKELYDLRLALKQ----------- 723
Cdd:pfam15921 541 DHLRNVQT-ECEALKLQMAEKDKVIEILRQQIEnmtqlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEfkilkdkkdak 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 724 -ENEEKRNADM------LYNKDSEQLRikeeecgKVVETKQQLKwnlrRLVKELRTVRNNL-----DLVVQERNDAQKQL 791
Cdd:pfam15921 620 iRELEARVSDLelekvkLVNAGSERLR-------AVKDIKQERD----QLLNEVKTSRNELnslseDYEVLKRNFRNKSE 688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 792 SEEQDARILQDQiLTSKQKELEMARKKMNS-EISHRHQKEKDLfhedcMLQEEIALLRLEIDTIKNQnkqkekkyfedIE 870
Cdd:pfam15921 689 EMETTTNKLKMQ-LKSAQSELEQTRNTLKSmEGSDGHAMKVAM-----GMQKQITAKRGQIDALQSK-----------IQ 751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 871 AVKEKNDNLQKiiklNEETLTETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTAr 950
Cdd:pfam15921 752 FLEEAMTNANK----EKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI- 826
|
330 340
....*....|....*....|....*....
gi 1034602354 951 dlkldFQRTRQEWVRLHDKMKVDMSGLQA 979
Cdd:pfam15921 827 -----IQRQEQESVRLKLQHTLDVKELQG 850
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
746-1110 |
5.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 5.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 746 EEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNSEISH 825
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 826 RHQKEKDLFHEDCMLQEEIALLRLEIDT----IKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNE---ETLTETILQYS 898
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEElnkkIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKErelEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 899 GQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDcdqsqtARDLKLDFQRTRQEwvrlHDKMKvdmsglq 978
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE------LEEVDKEFAETRDE----LKDYR------- 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 979 akneilsEKLSNAESKINSLQiqlhNTRDALGRESLILERVQRDLSQTQCQKKEteqmyqieqsKLKKYIAKQESVEERL 1058
Cdd:TIGR02169 392 -------EKLEKLKREINELK----RELDRLQEELQRLSEELADLNAAIAGIEA----------KINELEEEKEDKALEI 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1034602354 1059 SQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNL-QAESEKQILS 1110
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELaEAEAQARASE 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
763-1243 |
9.03e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 9.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 763 LRRLVKELRTVRNNLDLVVQERNDAQKQLSE-EQDARILQDQILTSKQKELEMARKkmnsEISHRHQKEKDLFHEDCMLQ 841
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDAlREELDELEAQIRGNGGDRLEQLER----EIERLERELEERERRRARLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 842 EEIALLRLEIDTIKNQnkqkekkyFEDI-EAVKEKNDNLQKIIKLNEETLTETIlqysGQLNNLTAENKILNSELENGKQ 920
Cdd:COG4913 366 ALLAALGLPLPASAEE--------FAALrAEAAALLEALEEELEALEEALAEAE----AALRDLRRELRELEAEIASLER 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 921 NQERLEIEMESYRCRLAAA----------------VRDCDQS-QTA-----RDLKLD-------FQRTRqEWV-RLHDKM 970
Cdd:COG4913 434 RKSNIPARLLALRDALAEAlgldeaelpfvgelieVRPEEERwRGAiervlGGFALTllvppehYAAAL-RWVnRLHLRG 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 971 KVDMSGLQAKNEI----------LSEKLSNAESKI-NSLQIQLHNTRDALGRESL-ILERVQRDLSQTqCQKKETEQMYQ 1038
Cdd:COG4913 513 RLVYERVRTGLPDperprldpdsLAGKLDFKPHPFrAWLEAELGRRFDYVCVDSPeELRRHPRAITRA-GQVKGNGTRHE 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1039 IE---------------QSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQ--FHSAAKNLq 1101
Cdd:COG4913 592 KDdrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREI- 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1102 AESEKQILSLQEKNKELM---DEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQptseatsrchinlDETQDSKK 1178
Cdd:COG4913 671 AELEAELERLDASSDDLAaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL-------------DELQDRLE 737
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034602354 1179 KLGQIRSEIDLTEAQEtvpsRCLHLDAENEVLQLQQtlfsmkAIQKQCETLQKNKKQLKQEVVNL 1243
Cdd:COG4913 738 AAEDLARLELRALLEE----RFAAALGDAVERELRE------NLEERIDALRARLNRAEEELERA 792
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
866-1165 |
1.01e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 866 FEDIEAVKEKNDNLQKII--------KLNEEtlTETILQY---------------SGQLNNLTAENKILNSELENGKQNQ 922
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIdekrqqleRLRRE--REKAERYqallkekreyegyelLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 923 ERLEIEMESYRCRLAAAVRDCDQ-SQTARDLKLDFQRTRQEWVRlhdKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQ 1001
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1002 LHNTRDAlgresliLERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANS 1081
Cdd:TIGR02169 331 IDKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1082 QEKTSSTIQD------------------------QFHSAAKNLQAE---SEKQILSLQEKNKELMDEYNHLKERMDQCEK 1134
Cdd:TIGR02169 404 LKRELDRLQEelqrlseeladlnaaiagieakinELEEEKEDKALEikkQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340 350
....*....|....*....|....*....|.
gi 1034602354 1135 EkagrkvvMREFQQEWTDLLKQQPTSEATSR 1165
Cdd:TIGR02169 484 E-------LSKLQRELAEAEAQARASEERVR 507
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
984-1340 |
1.16e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 984 LSEKLSNAESKINSLQIQLHNTRDALGResliLERVQRDLSQTQCQKKETEQM--YQIEQSKLKKYIAKQESVEERLSQL 1061
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEK----LEKLLQLLPLYQELEALEAELaeLPERLEELEERLEELRELEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1062 QSENMLLRQQLDDAhkkansQEKTSSTIQDQFHSAAKNLQaESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKV 1141
Cdd:COG4717 169 EAELAELQEELEEL------LEQLSLATEEELQDLAEELE-ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1142 VMREFQQEWT--------DLLKQQPTSEATSRC------------HINLDETQDSKKKLGQIRSEIDLTEAQETVPSRC- 1200
Cdd:COG4717 242 EERLKEARLLlliaaallALLGLGGSLLSLILTiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEEl 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1201 ------LHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKsymERNMLERGKA----EWHKLLIEERARK 1270
Cdd:COG4717 322 eellaaLGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE---IAALLAEAGVedeeELRAALEQAEEYQ 398
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1271 EIEEKLNEAILTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKDLESEISRIKTSQADFnKTELERYKE 1340
Cdd:COG4717 399 ELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL-EAELEQLEE 467
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
764-1376 |
2.07e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 764 RRLVKELRTVRNNLdlvvQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNSEISHRHQKEKDLfhedcmlQEE 843
Cdd:TIGR04523 36 KQLEKKLKTIKNEL----KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKL-------NSD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 844 IALLRLEIDTiknQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEEtltetilqysgqLNNLTAENKILNSELENGKQNQE 923
Cdd:TIGR04523 105 LSKINSEIKN---DKEQKNKLEVELNKLEKQKKENKKNIDKFLTE------------IKKKEKELEKLNNKYNDLKKQKE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 924 RLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEIL-------SEKLSNAESKIN 996
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLkdniekkQQEINEKTTEIS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 997 SLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETE---QMYQIEQSKLK--------KYIAKQ-ESVEERLSQLQSE 1064
Cdd:TIGR04523 250 NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNnqkeqdwnKELKSElKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1065 NM-------LLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAEsEKQILSLQEKNKELMDEYNHLKERMDQCEKEKA 1137
Cdd:TIGR04523 330 ISqnnkiisQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL-KKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1138 GRKVVMREFQQEWTDLLKQQPTSEAT---SRCHINLDETQDSKKKLgQIRSEIDLTEAQETVPSRcLHLDAENEVLQLQQ 1214
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETiikNNSEIKDLTNQDSVKEL-IIKNLDNTRESLETQLKV-LSRSINKIKQNLEQ 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1215 TLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGKAEWHKLLIEERArKEIEEKLNE-----AILTLQKQAAV 1289
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI-SDLEDELNKddfelKKENLEKEIDE 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1290 SHEQLVQLREDNTTSIKTQMELT--IKDLESEISRIKTSQADFNKTELERYKELYLEEvKVRESLSNELSRTNEMIAEVS 1367
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQelIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK-KENEKLSSIIKNIKSKKNKLK 644
|
....*....
gi 1034602354 1368 TQLTVEKEQ 1376
Cdd:TIGR04523 645 QEVKQIKET 653
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
883-1193 |
2.76e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 883 IKLNEETLTETilQYSGQLNNLTAENKILNSELENGK---QNQERLEIEMESyRCRLAAAVRDCDQSQTARDLKLDFQRT 959
Cdd:pfam17380 258 VRYNGQTMTEN--EFLNQLLHIVQHQKAVSERQQQEKfekMEQERLRQEKEE-KAREVERRRKLEEAEKARQAEMDRQAA 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 960 ---RQEWVRLHDKMKVDMSGLQAKN----EILSEKLSNAESKINSLQ-IQLHNTR-DALGRESLILERVQRDLSQTQcQK 1030
Cdd:pfam17380 335 iyaEQERMAMERERELERIRQEERKreleRIRQEEIAMEISRMRELErLQMERQQkNERVRQELEAARKVKILEEER-QR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1031 KETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQlddahkKANSQEKTSSTIQDQFHSAAKNLQAESEKQILS 1110
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE------EQERQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1111 LQEKNKELMDEyNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEATS--RCHINLDE---TQDSKKKLGQIRS 1185
Cdd:pfam17380 488 RAEEQRRKILE-KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEerRKQQEMEErrrIQEQMRKATEERS 566
|
....*...
gi 1034602354 1186 EIDLTEAQ 1193
Cdd:pfam17380 567 RLEAMERE 574
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
509-1354 |
3.78e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 509 EELQQDMQKFKNEVNTLEEEFLALKKEDVQLHKD---VEEEMEKHRSNSTELSGTLTDGTTVGNDDDGLNQQIPRKENGE 585
Cdd:TIGR00606 251 KNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDnseLELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEK 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 586 HDRPADKTSNEKNEVKNQIYPEADFADSMEpseiasedcelSHSVYENFMLLIEQLRMEY----KDSASLPRIQDTFCLC 661
Cdd:TIGR00606 331 LNKERRLLNQEKTELLVEQGRLQLQADRHQ-----------EHIRARDSLIQSLATRLELdgfeRGPFSERQIKNFHTLV 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 662 ----EHLLKLKNNHCDQLTVKLKQMENMVSVLQNELSETKKTklqLELQKIEWEKELYDLRLALKQENEEKRNADMLYNK 737
Cdd:TIGR00606 400 ierqEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT---IELKKEILEKKQEELKFVIKELQQLEGSSDRILEL 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 738 DsEQLRIKEEECGKVveTKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARK 817
Cdd:TIGR00606 477 D-QELRKAERELSKA--EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 818 -------------------KMNSEISHRHQKEKDLFHEDCM-LQEEIALL-------RLEIDTIKNQNKQKEKKYFE--D 868
Cdd:TIGR00606 554 iksrhsdeltsllgyfpnkKQLEDWLHSKSKEINQTRDRLAkLNKELASLeqnknhiNNELESKEEQLSSYEDKLFDvcG 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 869 IEAVKEKNDNLQKIIKLNEET---LTETILQYSGQLNNLTAENK----ILNSELENGKQNQE---RLEIEMESYRCRLAA 938
Cdd:TIGR00606 634 SQDEESDLERLKEEIEKSSKQramLAGATAVYSQFITQLTDENQsccpVCQRVFQTEAELQEfisDLQSKLRLAPDKLKS 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 939 AVRDCDQSQTARDLKLDFQRTRQEWVRLHDKmkvDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILER 1018
Cdd:TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEK---EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1019 VQRdLSQTQCQKKETEQMYQIEQSKL---------KKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTI 1089
Cdd:TIGR00606 791 VTI-MERFQMELKDVERKIAQQAAKLqgsdldrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1090 QDQFHSAAKNLQaesekQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEATSRchin 1169
Cdd:TIGR00606 870 KSEKLQIGTNLQ-----RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQ---- 940
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1170 lDETQDSKKKLGQIRSEIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMER 1249
Cdd:TIGR00606 941 -DKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD 1019
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1250 NMLERGKAEWHKLLieERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKdlESEISRIKTSQAD 1329
Cdd:TIGR00606 1020 NLTLRKRENELKEV--EEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEK--EIKHFKKELREPQ 1095
|
890 900
....*....|....*....|....*
gi 1034602354 1330 FNKTElERYKELYLEEVKVRESLSN 1354
Cdd:TIGR00606 1096 FRDAE-EKYREMMIVMRTTELVNKD 1119
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
794-1300 |
3.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 794 EQDARILQDQI--LTSKQKELEMARKKMN--SEI-----SHRHQKEKDLFHEDCM-------LQEEIALLRLEIDTIKnq 857
Cdd:COG4913 224 FEAADALVEHFddLERAHEALEDAREQIEllEPIrelaeRYAAARERLAELEYLRaalrlwfAQRRLELLEAELEELR-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 858 nkqkekkyfEDIEAVKEKNDNLQKIIKLNEETLTETILQYSG----QLNNLTAENKILNSELENGKQNQERLEiemesyr 933
Cdd:COG4913 302 ---------AELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 934 crlaaavrdcdqsQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDAL---- 1009
Cdd:COG4913 366 -------------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIasle 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1010 GRESLILERVQ--RDLSQTQCQKKETE------------------------------------QMYQ-----IEQSKLKK 1046
Cdd:COG4913 433 RRKSNIPARLLalRDALAEALGLDEAElpfvgelievrpeeerwrgaiervlggfaltllvppEHYAaalrwVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1047 YI----AKQESVEERLSQLQSE-----------------NMLLRQQLD----------DAHKKA---NSQEKTSST---I 1089
Cdd:COG4913 513 RLvyerVRTGLPDPERPRLDPDslagkldfkphpfrawlEAELGRRFDyvcvdspeelRRHPRAitrAGQVKGNGTrheK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1090 QDQFHSAAKN-LQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGrkvvMREFQQEWTDLLKQQPTSEATSRCHI 1168
Cdd:COG4913 593 DDRRRIRSRYvLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDA----LQERREALQRLAEYSWDEIDVASAER 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1169 NLDETQDSKKKLgqIRSEIDLTEAQETVpsrclhLDAENEVLQLQQTLfsmKAIQKQCETLQKNKKQLKQEVVNLKSYME 1248
Cdd:COG4913 669 EIAELEAELERL--DASSDDLAALEEQL------EELEAELEELEEEL---DELKGEIGRLEKELEQAEEELDELQDRLE 737
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1249 RnmLERGKAEWHKLLIEER--------ARKEIEEKLNEAILTLQKQAAVSHEQLVQLRED 1300
Cdd:COG4913 738 A--AEDLARLELRALLEERfaaalgdaVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
674-962 |
5.19e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 674 QLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQ-ENEEKRNADMLYNKDSEQLRIKEEECGKV 752
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEaELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 753 VETKQQlkwNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNSEISHRHQKEKD 832
Cdd:COG1196 297 LARLEQ---DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 833 LfHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTETILQYSGQLNNLTAENKILN 912
Cdd:COG1196 374 L-AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1034602354 913 SELENGKQNQERLEIEMESYRcRLAAAVRDCDQSQTARDLKLDFQRTRQE 962
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
678-1366 |
6.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 678 KLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADmlynkDSEQLRIKEEecgkvvetkq 757
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG-----EEEQLRVKEK---------- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 758 qlkwnLRRLVKELRTVRNNLDLVVQERNDAQKQLS---EEQDARILQDQILTSKQKELEMARKKMNSEISHRHQKEKDLF 834
Cdd:TIGR02169 296 -----IGELEAEIASLERSIAEKERELEDAEERLAkleAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 835 HEDCMLQEEIALLRLEIDtiknqnkqkekKYFEDIEAVKEKNDNLQKiiklNEETLTETILQYSGQLNNltaenkiLNSE 914
Cdd:TIGR02169 371 AELEEVDKEFAETRDELK-----------DYREKLEKLKREINELKR----ELDRLQEELQRLSEELAD-------LNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 915 LENGKQNQERLEIEMESYRCRLAAAVRDCdqSQTARDLkldfqrtrqewvrlhDKMKVDMSGLQAKNEILSEKLSNAESK 994
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKL--EQLAADL---------------SKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 995 InslqIQLHNTRDALGRESLILERVQRDLSQ-------TQCQKKETEQMYQ--IEQS---KLKKYIAKQESVEERLSQLQ 1062
Cdd:TIGR02169 492 L----AEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYAtaIEVAagnRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1063 SENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLqAESEKQ-------------ILSLQEKNKELMDEY------- 1122
Cdd:TIGR02169 568 KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDL-VEFDPKyepafkyvfgdtlVVEDIEAARRLMGKYrmvtleg 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1123 -----------NHLKERMDQC----EKEKAGRkvvMREFQQEWTDLLK--QQPTSEATSRCHINLDETQDSKKKLGQIRS 1185
Cdd:TIGR02169 647 elfeksgamtgGSRAPRGGILfsrsEPAELQR---LRERLEGLKRELSslQSELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1186 EIDLTEAQETVPSRCLHlDAENEVLQLQQTLF----SMKAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGKAEWHK 1261
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLE-ELEEDLSSLEQEIEnvksELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1262 L-----LIEERARkEIEEKLNEAILTLQKQAAVSHEQLVQLR--EDNTTSIKTQMELTIKDLESEISRIKTSQADFNKTE 1334
Cdd:TIGR02169 803 LeeevsRIEARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIdlKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
730 740 750
....*....|....*....|....*....|..
gi 1034602354 1335 lERYKELYLEEVKVRESLSNELSRTNEMIAEV 1366
Cdd:TIGR02169 882 -SRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
762-1381 |
8.82e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 762 NLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMnSEISHRHQKEKDLFHEDCMLQ 841
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 842 EEIALLRLEIDTIKNQNKQKEkkyfEDIEAVKEKNDNLQKIIKLNEEtLTETILQYSgqlnnltaenkILNSELENGKQN 921
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELE----ERIEELKKEIEELEEKVKELKE-LKEKAEEYI-----------KLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 922 QERLEIEMESYRCRLAAAVRDCDqsqtardlKLDFQRTRQEWvrlhdkMKVDMSGLQAKNEILSEKLSNAEsKINSLQIQ 1001
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIK--------ELEEKEERLEE------LKKKLKELEKRLEELEERHELYE-EAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1002 LHNTRDALGRESLilERVQRDLSQTQCQKKE-TEQMYQIEQSK--LKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKK 1078
Cdd:PRK03918 374 LERLKKRLTGLTP--EKLEKELEELEKAKEEiEEEISKITARIgeLKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1079 ansqektsstiqdqfhsaakNLQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQqewtdLLKQqp 1158
Cdd:PRK03918 452 --------------------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE-----LAEQ-- 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1159 tseatsrchinLDETQDSKKKLGQIRSEIDLTEAqETVPSRCLHLdaENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQ 1238
Cdd:PRK03918 505 -----------LKELEEKLKKYNLEELEKKAEEY-EKLKEKLIKL--KGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1239 EVVNLksymERNMLERGKAEWHKLlieERARKEIEEKLNEAI-LTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKDLE 1317
Cdd:PRK03918 571 ELAEL----LKELEELGFESVEEL---EERLKELEPFYNEYLeLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034602354 1318 SEISRIKTSQADFNKTELERYKELYLEEVKVRESLSNELSRTNEMIAEVSTQLTVEKEQTRSRS 1381
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
978-1194 |
9.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 978 QAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEER 1057
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1058 LSQLQSEnmlLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQ------AESEKQILSLQEKNKELMDEYNHL---KER 1128
Cdd:COG4942 99 LEAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELeaeRAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034602354 1129 MDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEATSRchINLDETQDSKKKLGQIRSEIDLTEAQE 1194
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELA--AELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
984-1341 |
1.06e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 984 LSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQS 1063
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1064 ENMLLRQQLDDAHKKANSQEKTSSTIQDQfhsaaknlQAESEKQILSLQEKNKELMDEYNHLKERMDQCEKEKAGRKvvM 1143
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQ--------IAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS--E 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1144 REFQQEWTDLLKQQPTSEATSRCHINLDETQDSKKKLGQIRSEIDLTEaqetvpsrclhlDAENEVLQLQQTLFSMKAIQ 1223
Cdd:COG4372 179 AEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDS------------LEAKLGLALSALLDALELEE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1224 KQCETLQKNKKQLKQEVVNL---KSYMERNMLERGKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLRED 1300
Cdd:COG4372 247 DKEELLEEVILKEIEELELAilvEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAK 326
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1034602354 1301 NTTSIKTQMELTIKDLESEISRIKTSQADFNKTELERYKEL 1341
Cdd:COG4372 327 KLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGV 367
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
678-1317 |
1.07e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 678 KLKQMENMVSVLQNELSETKKT---KL-QLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKVV 753
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMyedKIeELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 754 ETKQQLkWNlrrlvkelRTVRNNLDLvvqerndaqKQLSEEQDARILQDQiltskqkELEMARKKMNSEishrhqkekdl 833
Cdd:pfam15921 398 EQNKRL-WD--------RDTGNSITI---------DHLRRELDDRNMEVQ-------RLEALLKAMKSE----------- 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 834 fhedCMLQEEiallrleidtiknqnkqkekkyfEDIEAVKEKNDNLQKIiklneetltetilqysgqlNNLTAenkilns 913
Cdd:pfam15921 442 ----CQGQME-----------------------RQMAAIQGKNESLEKV-------------------SSLTA------- 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 914 ELENGKQNQERLEIEMESYRCRLAAAVRD-CDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQ-AKNEilSEKLSNA 991
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTvSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhLKNE--GDHLRNV 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 992 ESKINSLQIQLHNTRDALGreslILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIakqesvEERLSQLQSENMLlrqq 1071
Cdd:pfam15921 547 QTECEALKLQMAEKDKVIE----ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEI------NDRRLELQEFKIL---- 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1072 lddAHKKANSQEKTSSTIQDQFHSAAKNLQAESE--KQILSLQEKNKELMDEYNHLKERMDQCEKEkagRKVVMREFQQe 1149
Cdd:pfam15921 613 ---KDKKDAKIRELEARVSDLELEKVKLVNAGSErlRAVKDIKQERDQLLNEVKTSRNELNSLSED---YEVLKRNFRN- 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1150 wtdllKQQPTSEATSRCHINLDETQdskKKLGQIRSEIDLTEA------------QETVPSRCLHLDAENEVLQLQQTlf 1217
Cdd:pfam15921 686 -----KSEEMETTTNKLKMQLKSAQ---SELEQTRNTLKSMEGsdghamkvamgmQKQITAKRGQIDALQSKIQFLEE-- 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1218 SMKAIQKQCETLQKNKKQLKQEVVNLKSymERNMLergKAEWHKLLIEERARKEIEEKLNEAILTLQKQAAVSHEqLVQL 1297
Cdd:pfam15921 756 AMTNANKEKHFLKEEKNKLSQELSTVAT--EKNKM---AGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD-IIQR 829
|
650 660
....*....|....*....|
gi 1034602354 1298 REDNTTSIKTQMELTIKDLE 1317
Cdd:pfam15921 830 QEQESVRLKLQHTLDVKELQ 849
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
740-1334 |
1.26e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 740 EQLRIKEEECGKVVETKQQLKwnlrrlvKELRTVRNNLDLVVQERNDAQKQL---------SEEQDAR----------IL 800
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAE-------SELKELEKKHQQLCEEKNALQEQLqaetelcaeAEEMRARlaarkqeleeIL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 801 QDqiLTSKQKELEMARKKMNSEISHRHQKEKDLfhEDCMLQEEIALLRLEIDTIKNQNKQKEKKyfEDIEAVKEKNDNLQ 880
Cdd:pfam01576 78 HE--LESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKKLE--EDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 881 KIIKLNEETLTETILQY------SGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRD-----CDQSQTA 949
Cdd:pfam01576 152 KERKLLEERISEFTSNLaeeeekAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDlqeqiAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 950 RDLKLDFQRTRQEWVRLHDKMKVDMSglqAKNEILsEKLSNAESKINSLQIQLHNTRDALGREslilERVQRDLSQT-QC 1028
Cdd:pfam01576 232 AELRAQLAKKEEELQAALARLEEETA---QKNNAL-KKIRELEAQISELQEDLESERAARNKA----EKQRRDLGEElEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1029 QKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLqaesEKQI 1108
Cdd:pfam01576 304 LKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANL----EKAK 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1109 LSLQEKNKELMDEYNHLKERMDQCEKEKAGRKVVMREFQQEWTDLLKQQptseatsrchinldetQDSKKKLGQIRSEID 1188
Cdd:pfam01576 380 QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQR----------------AELAEKLSKLQSELE 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1189 -LTEAQETVPSRCLHLDAENEVL--QLQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmlergkaewhklliE 1265
Cdd:pfam01576 444 sVSSLLNEAEGKNIKLSKDVSSLesQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE---------------E 508
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034602354 1266 ERARKEIEEKlneaILTLQKQAAVSHEQLvqlrEDNTTSIKTQMELT---IKDLESEISRIKTSQADFNKTE 1334
Cdd:pfam01576 509 EEAKRNVERQ----LSTLQAQLSDMKKKL----EEDAGTLEALEEGKkrlQRELEALTQQLEEKAAAYDKLE 572
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
23-177 |
1.37e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 23 QKPATAWRERCPRPGLLVGDG----AGRPWLGQIGASRSVSDSRPAATFRGFWTPPAIPPRLSGSAPPDWPCPRSAGSSR 98
Cdd:PHA03307 285 ASSSSSPRERSPSPSPSSPGSgpapSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034602354 99 RPGASGGSHRWENRQEAALDPAGQRQSlrqpggiQQLVPEYKEKQTPESLPQNNNPDWHPTNLTLSDETCQRSKNLKVD 177
Cdd:PHA03307 365 PRKRPRPSRAPSSPAASAGRPTRRRAR-------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPS 436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
867-1088 |
1.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 867 EDIEAVKEKNDNLQKIIKLNE----------ETLTETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRL 936
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKkeekallkqlAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 937 AAAVRDCDQSQTARDLKLDF-QRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLhntrdalgresli 1015
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER------------- 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034602354 1016 lERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSST 1088
Cdd:COG4942 174 -AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
665-1084 |
1.65e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 665 LKLKNNHCDQLTVKLKQMENMVSVLQNELSEtkktkLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYnkdsEQLRI 744
Cdd:COG4717 83 AEEKEEEYAELQEELEELEEELEELEAELEE-----LREELEKLEKLLQLLPLYQELEALEAELAELPERL----EELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 745 KEEECGKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQER-NDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNS-E 822
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQlE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 823 ISHRHQKEKDLFHEDCMLQEEIALLrLEIDTIKNQNKQKEKKYFEDIEAVKEkndnLQKIIKLNEETLTETILQYSGQLN 902
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIAAAL-LALLGLGGSLLSLILTIAGVLFLVLG----LLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 903 NLTAENKILNSELENGKQNQ---ERLEIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQA 979
Cdd:COG4717 309 ALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 980 KNEILSEKLSNAESKINSLQIQLHNTRDALGRESLIL--ERVQRDLSQTQCQKKETEQmyqieqsKLKKYIAKQESVEER 1057
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEE-------ELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 1034602354 1058 LSQLQSENML--LRQQLDDAHKKANSQEK 1084
Cdd:COG4717 462 LEQLEEDGELaeLLQELEELKAELRELAE 490
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
906-1370 |
2.29e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 906 AENKILNSELENGKQNQERLEIEMESYRCRLAAAvrdcdqsqtARDLKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILS 985
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKK---------ASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 986 EKLSNAESKINSLQIqlhntrdalgresliLERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESveeRLSQLQSEN 1065
Cdd:pfam05557 73 EQAELNRLKKKYLEA---------------LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAEL---ELQSTNSEL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1066 MLLRQQLDDAHKKANSQEKTSSTIQDQFHSAA-----------------------KNLQAES------EKQILSLQEKNK 1116
Cdd:pfam05557 135 EELQERLDLLKAKASEAEQLRQNLEKQQSSLAeaeqrikelefeiqsqeqdseivKNSKSELaripelEKELERLREHNK 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1117 E----------LMDEYNHLKERMDQCEKEKAgrKVVMREFQQEWTDLLKQQPTSEATSRChINLDETQDSKKKLGQIRS- 1185
Cdd:pfam05557 215 HlnenienkllLKEEVEDLKRKLEREEKYRE--EAATLELEKEKLEQELQSWVKLAQDTG-LNLRSPEDLSRRIEQLQQr 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1186 EIDLTEAQETVPSRCLHLdaENEVLQLQQTLfsmKAIQKQCETLQKNKKQLKQEVVNLKSYM-----ERNMLERGKAEWH 1260
Cdd:pfam05557 292 EIVLKEENSSLTSSARQL--EKARRELEQEL---AQYLKKIEDLNKKLKRHKALVRRLQRRVllltkERDGYRAILESYD 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1261 KLLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKDLESEISRIKTSQADFNKTElERYKE 1340
Cdd:pfam05557 367 KELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK-EEVDS 445
|
490 500 510
....*....|....*....|....*....|
gi 1034602354 1341 LYLEevkvRESLSNELSRTNEMIAEVSTQL 1370
Cdd:pfam05557 446 LRRK----LETLELERQRLREQKNELEMEL 471
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
675-1012 |
2.42e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 675 LTVKLKQMENMVSVLQNELSETKkTKLQLELQKIEwekelydlrlALKQENEEKRNAdmlyNKDSEQLRIKEEECGKVVE 754
Cdd:pfam15921 501 LTASLQEKERAIEATNAEITKLR-SRVDLKLQELQ----------HLKNEGDHLRNV----QTECEALKLQMAEKDKVIE 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 755 TKQQLKWNLRRLVKEL-RTVRNNLDLVVQERNDAQKQLSEEQDARILQDQI------LTSKQKELEMARKKMNSEISHRH 827
Cdd:pfam15921 566 ILRQQIENMTQLVGQHgRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKdakireLEARVSDLELEKVKLVNAGSERL 645
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 828 QKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTET-------------- 893
Cdd:pfam15921 646 RAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlksmegsdgha 725
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 894 ----------ILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDcdqsqtardlkldfqrtrqew 963
Cdd:pfam15921 726 mkvamgmqkqITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE--------------------- 784
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1034602354 964 vrlHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRE 1012
Cdd:pfam15921 785 ---KNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQ 830
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
508-1073 |
2.74e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 508 HEELQQDMQKFKNEVNTLEEE---FLALKKEDVQLHKDVEEEMEKHRSNSTELSgtltdgTTVGNDDDGLNQQIPRKENG 584
Cdd:pfam05483 221 HEKIQHLEEEYKKEINDKEKQvslLLIQITEKENKMKDLTFLLEESRDKANQLE------EKTKLQDENLKELIEKKDHL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 585 EHDRPADKTSNEKNeVKNQIYPEADFadsmepsEIASED-CELSHsvyENFMLLIEQLRMEYKDSASLPRIQDTFCLCEH 663
Cdd:pfam05483 295 TKELEDIKMSLQRS-MSTQKALEEDL-------QIATKTiCQLTE---EKEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 664 LLKLKNNHCDQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSE--- 740
Cdd:pfam05483 364 LLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQElif 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 741 QLRIKEEECGKVVETKQQLKWNLRRLVKELRTVRNNLdlvvQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMN 820
Cdd:pfam05483 444 LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL----EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 821 SEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIknqnkqkEKKYFEDIEAVKEKNDNLQKiiklNEETLTETILQYSGQ 900
Cdd:pfam05483 520 EDIINCKKQEERMLKQIENLEEKEMNLRDELESV-------REEFIQKGDEVKCKLDKSEE----NARSIEYEVLKKEKQ 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 901 LNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQ-TARDLKLDFQRTRQEWVRLHDKMKVDMSGLQA 979
Cdd:pfam05483 589 MKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEiKVNKLELELASAKQKFEEIIDNYQKEIEDKKI 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 980 KNEILSEKLSNAESKIN-SLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAKQESVEERL 1058
Cdd:pfam05483 669 SEEKLLEEVEKAKAIADeAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIEL 748
|
570
....*....|....*
gi 1034602354 1059 SQLQSENMLLRQQLD 1073
Cdd:pfam05483 749 SNIKAELLSLKKQLE 763
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
870-1117 |
3.17e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 870 EAVKEKNDNLQKIIKLNEEtltetILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYRCRLAAAVRDcdqsqta 949
Cdd:COG3883 27 ELQAELEAAQAELDALQAE-----LEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 950 rdlkldfqrtrqewvrlhdkMKVDMSGLQAKNEIL-SEKLSNAESKINSLQIQLHNTRDalgreslILERVQRDLSQTQC 1028
Cdd:COG3883 95 --------------------LYRSGGSVSYLDVLLgSESFSDFLDRLSALSKIADADAD-------LLEELKADKAELEA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1029 QKKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESEKQI 1108
Cdd:COG3883 148 KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
....*....
gi 1034602354 1109 LSLQEKNKE 1117
Cdd:COG3883 228 AAAAAAAAA 236
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
977-1111 |
3.50e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 977 LQAKNEILSEK------LSNAESKINSLQIQLHNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQIEQSKLKKYIAK 1050
Cdd:PRK12704 60 LEAKEEIHKLRnefekeLRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034602354 1051 QESVEERLSQLQSE---NMLLRQQlddahkKANSQEKTSSTIQdQFHSAAKnLQAESE-KQILSL 1111
Cdd:PRK12704 140 QLQELERISGLTAEeakEILLEKV------EEEARHEAAVLIK-EIEEEAK-EEADKKaKEILAQ 196
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
673-851 |
3.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 673 DQLTVKLKQMENMVSVLQNELSETKKTKLQLELQKIEWEKELYDLRLALKQENeekRNADMLYNKDSEQLRIKEEECGKV 752
Cdd:COG4942 58 AALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 753 VETKQQLKW---NLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQDARILQDQILTSKQKELEMARKKMNSEISHRHQK 829
Cdd:COG4942 135 VRRLQYLKYlapARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE 214
|
170 180
....*....|....*....|..
gi 1034602354 830 EKDLFHEDCMLQEEIALLRLEI 851
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEA 236
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
918-1194 |
3.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 918 GKQNQERLEI---EMESYRCRLAAAVRDCDQSQTARDLkLDFQRTRQEWVRLHDKMKVDMSGLQAKneilseklsnaesk 994
Cdd:COG4913 605 GFDNRAKLAAleaELAELEEELAEAEERLEALEAELDA-LQERREALQRLAEYSWDEIDVASAERE-------------- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 995 INSLQIQLhntrDALGRESLILERVQRDLSQTQCQKKETEQmyqieqsKLKKYIAKQESVEERLSQLQSENMLLRQQLDD 1074
Cdd:COG4913 670 IAELEAEL----ERLDASSDDLAALEEQLEELEAELEELEE-------ELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1075 AHKKANSQEktSSTIQDQFHSAaknLQAESEKQILslqeknKELMDEYNHLKERMDQCEKEKAGrkvVMREFQQEWTDll 1154
Cdd:COG4913 739 AEDLARLEL--RALLEERFAAA---LGDAVERELR------ENLEERIDALRARLNRAEEELER---AMRAFNREWPA-- 802
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1034602354 1155 kqqPTSEATsrchINLDETQDSKKKLGQIRSEiDLTEAQE 1194
Cdd:COG4913 803 ---ETADLD----ADLESLPEYLALLDRLEED-GLPEYEE 834
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
890-1340 |
4.08e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 890 LTETILQYSGQLNNLTAENKILN-SELENGKQNQERLEIEMESYRcRLAAAVRDCDQSQtaRDLKLDFQRTRQEWVRLhd 968
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNlKELKELEEELKEAEEKEEEYA-ELQEELEELEEEL--EELEAELEELREELEKL-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 969 KMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGResliLERVQRDLSQTQCQKKETEQMYQIEQSK-LKKY 1047
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEEeLQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1048 IAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQEKTSSTIQDQFHSAAKNLQAESEKQILSLQEKNKELMDEYNHL-- 1125
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1126 -------------------KERMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEATSRCHI-----NLDETQDSKKKLG 1181
Cdd:COG4717 278 vlflvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELlelldRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1182 QIRSEIDLTEAQETVPSRCLHLDAENEvlqlqqtlfsmKAIQKQCETLQKnKKQLKQEVVNLKSYMERnmlergkaewHK 1261
Cdd:COG4717 358 ELEEELQLEELEQEIAALLAEAGVEDE-----------EELRAALEQAEE-YQELKEELEELEEQLEE----------LL 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1262 LLIEERARKEIEEKLNEAILTLQKQAAVSHEQLVQLREDnttsiktqmeltIKDLESEISRIKTSQA-DFNKTELERYKE 1340
Cdd:COG4717 416 GELEELLEALDEEELEEELEELEEELEELEEELEELREE------------LAELEAELEQLEEDGElAELLQELEELKA 483
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
704-1383 |
4.63e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 704 ELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEECGKVVETKQQLKWNLRRLVKE----------LRTV 773
Cdd:TIGR01612 1133 ALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEiaeiekdktsLEEV 1212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 774 RN-------NLDLVVQERNDAQKQLSE-----------------------EQDARILQD--------QILTSKQKELEMA 815
Cdd:TIGR01612 1213 KGinlsygkNLGKLFLEKIDEEKKKSEhmikameayiedldeikekspeiENEMGIEMDikaemetfNISHDDDKDHHII 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 816 RKKMNSEISHRHQKEKDLFhEDCMLQEEIALLRLEIDTiknqNKQKEKKYFEDIEAVKEKNDNLQKIIKLNE-ETLTETI 894
Cdd:TIGR01612 1293 SKKHDENISDIREKSLKII-EDFSEESDINDIKKELQK----NLLDAQKHNSDINLYLNEIANIYNILKLNKiKKIIDEV 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 895 LQYSgqlNNLTAENKILNSELENGKQNQERL--EIEMESYRCRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKv 972
Cdd:TIGR01612 1368 KEYT---KEIEENNKNIKDELDKSEKLIKKIkdDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFK- 1443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 973 dmsGLQAKNEILSEKLSNAESKINSLQIQLHNTRD-ALGRESLILERVQRDLSQTQCQKKETEQ-MYQIEQSKLKKYIAK 1050
Cdd:TIGR01612 1444 ---NADENNENVLLLFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEHIDKSKGCKDEADKnAKAIEKNKELFEQYK 1520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1051 QE-----------SVEERLSQLQSENMLLRQQLDDAHKK-----ANSQEKTSSTIQDQFH---SAAKNlqAESEKQILSL 1111
Cdd:TIGR01612 1521 KDvtellnkysalAIKNKFAKTKKDSEIIIKEIKDAHKKfileaEKSEQKIKEIKKEKFRiedDAAKN--DKSNKAAIDI 1598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1112 QEKNKELMDEY---NHLKERMDQC--EKEKAGRKVVMREFQQEWTDLlkqQPTSEATSRCHINLDETQDSKKKLGQIRSE 1186
Cdd:TIGR01612 1599 QLSLENFENKFlkiSDIKKKINDClkETESIEKKISSFSIDSQDTEL---KENGDNLNSLQEFLESLKDQKKNIEDKKKE 1675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1187 IDltEAQETVPSrclhldAENEVLQLQQTlFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmlergkaewhklLIEE 1266
Cdd:TIGR01612 1676 LD--ELDSEIEK------IEIDVDQHKKN-YEIGIIEKIKEIAIANKEEIESIKELIEPTIEN-------------LISS 1733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1267 RARKEIEE-KLNEAILTLQKQAAVSHEQLVQLREDNTTSIKTQMELTIKDLESEISRIkTSQADFNKT-ELERYKELYLE 1344
Cdd:TIGR01612 1734 FNTNDLEGiDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPITYDEIKNTRI-NAQNEFLKIiEIEKKSKSYLD 1812
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034602354 1345 EVKVRE-----------------SLSNELSRTNEMIAEVSTQLTVEKEQTRSRSLF 1383
Cdd:TIGR01612 1813 DIEAKEfdriinhfkkkldhvndKFTKEYSKINEGFDDISKSIENVKNSTDENLLF 1868
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
490-894 |
4.64e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 490 ENLSSLPPDSDR-TSEVylhEELQQDMQKFKNEVNTLEEEFLALKKEDVQLHKDVEEEMEKHRSNSTELSGTLTD-GTTV 567
Cdd:pfam05483 282 ENLKELIEKKDHlTKEL---EDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEfEATT 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 568 GNDDDGLNQQIPRKENGEhdrpaDKTSNEKNEVKNQIYPEADFADSMEPSEIASEdcELSHSVYENFMLLIEQLRMEYKD 647
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNE-----DQLKIITMELQKKSSELEEMTKFKNNKEVELE--ELKKILAEDEKLLDEKKQFEKIA 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 648 SASLPRIQDTFCLCEHLLKLKNNHCDQLTVK-------LKQMENMVSVLQNElsETKKTKL-----QLELQKIEWEKELY 715
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIktseehyLKEVEDLKTELEKE--KLKNIELtahcdKLLLENKELTQEAS 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 716 DLRLALKQENEekrnaDMLYNKDSEQLRIKEEEcgKVVETKQQLKWNLRRLVKELRTVRNNLDLVVQERNDAQKQLSEEQ 795
Cdd:pfam05483 510 DMTLELKKHQE-----DIINCKKQEERMLKQIE--NLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 796 DARILQDQILTSKQKELEMARKKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIeavkek 875
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII------ 656
|
410 420
....*....|....*....|..
gi 1034602354 876 nDNLQKII---KLNEETLTETI 894
Cdd:pfam05483 657 -DNYQKEIedkKISEEKLLEEV 677
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
672-1238 |
5.99e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 672 CDQLTVKLKQMENMVSVLQNELSET----KKTKLQLELQKIEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEE 747
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERInrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 748 ECGKVVETKQQLKWNLRRLVKELRTVRNNLDlvvqerndaqKQLSEEQDARILQDQILTSKQKELEMARKKMN-----SE 822
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISC----------QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIlqreqAT 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 823 ISHRHQKEKDL------FHEDCMLQEE-IALLRLEID---TIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEET--- 889
Cdd:TIGR00618 412 IDTRTSAFRDLqgqlahAKKQQELQQRyAELCAAAITctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKkav 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 890 -------LTETILQYSGQLNNLTAE-NKILNSE-----LENGKQNQERLEIEMESYRCRLAA----AVRDCDQSQTARD- 951
Cdd:TIGR00618 492 vlarlleLQEEPCPLCGSCIHPNPArQDIDNPGpltrrMQRGEQTYAQLETSEEDVYHQLTSerkqRASLKEQMQEIQQs 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 952 ----------LKLDFQRTRQEWVRLHDKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLH--NTRDALGRESLILERV 1019
Cdd:TIGR00618 572 fsiltqcdnrSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHlqQCSQELALKLTALHAL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1020 QRDLSQTQCQ------KKETEQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLddahkkanSQEKTSSTIQDQF 1093
Cdd:TIGR00618 652 QLTLTQERVRehalsiRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE--------THIEEYDREFNEI 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1094 HSAAKNLQAESEKQILSLQEKNKELMDEYnhlkeRMDQCEKEKAGRKVVMREFQQEWTDLLKQQPTSEATSRCHINLDET 1173
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQA-----RTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034602354 1174 QDSKKKLGQIRSEIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSMKAIQKQCETLQKNKKQLKQ 1238
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
697-1136 |
8.17e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 697 KKTKLQLELQkiEWEKELYDLRLALKQENEEKRNADMLYNKDSEQLRIKEEEcgkvvetkqqLKWNLRRLVKELRTVRNN 776
Cdd:pfam07888 28 RAELLQNRLE--ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRE----------LESRVAELKEELRQSREK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 777 LDLVVQERNDAQK---QLSEEQDARILQDQILTSKQKELEmarkkmnseishrhqkekdlfhedcmlqeeiallrleidt 853
Cdd:pfam07888 96 HEELEEKYKELSAsseELSEEKDALLAQRAAHEARIRELE---------------------------------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 854 iknqnkqkekkyfEDIEAVKEKndNLQKIIKLneETLTETILQYSGQLNNLTAENKILNSELENGKQNQERLEIEMESYR 933
Cdd:pfam07888 136 -------------EDIKTLTQR--VLERETEL--ERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELR 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 934 CRLAAAVRDCDQSQTARDLKLDFQRTRQEWVRLHDKMKVDMSGLQA-------KNEILSEKLSNAESKINSLQIQLHNTR 1006
Cdd:pfam07888 199 NSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQErlnaserKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1007 DALGRESLILERVQRDLSQTQC---QKKET-EQMYQIEQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDAHKKANSQ 1082
Cdd:pfam07888 279 LQAAQLTLQLADASLALREGRArwaQERETlQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQ 358
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1034602354 1083 EKTSSTIQDQFHSAAKNLQAESEKqilsLQEKNKELMDEYNHLKERMDQCEKEK 1136
Cdd:pfam07888 359 LSESRRELQELKASLRVAQKEKEQ----LQAEKQELLEYIRQLEQRLETVADAK 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-962 |
8.78e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 782 QERNDAQKQLSEEQDARilqdQILTSKQKELEMARKKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQK 861
Cdd:COG4942 27 AELEQLQQEIAELEKEL----AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 862 EKKYFEDIEAVKEKNDNLQKIIKLNEETLTETI--LQYSGQLNN-----------LTAENKILNSELENGKQNQERLEIE 928
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVrrLQYLKYLAParreqaeelraDLAELAALRAELEAERAELEALLAE 182
|
170 180 190
....*....|....*....|....*....|....
gi 1034602354 929 MESYRCRLAAAVRdcDQSQTARDLKLDFQRTRQE 962
Cdd:COG4942 183 LEEERAALEALKA--ERQKLLARLEKELAELAAE 214
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1202-1371 |
8.80e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1202 HLDAENEVLQ--LQQTLFSMKAIQKQCETLQKNKKQLKQEVVNLKSYMERnmLERGKAEWHKLLIEERAR---KEIEEKL 1276
Cdd:PRK11281 53 LLEAEDKLVQqdLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAE--LEALKDDNDEETRETLSTlslRQLESRL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1277 NE---AILTLQKQAAVSHEQLVQLRednTTSIKTQMELT-----IKDLESEISRIKTSQADFNKTELERYK-ELYLEEvk 1347
Cdd:PRK11281 131 AQtldQLQNAQNDLAEYNSQLVSLQ---TQPERAQAALYansqrLQQIRNLLKGGKVGGKALRPSQRVLLQaEQALLN-- 205
|
170 180
....*....|....*....|....
gi 1034602354 1348 vresLSNELSRTNemiAEVSTQLT 1371
Cdd:PRK11281 206 ----AQNDLQRKS---LEGNTQLQ 222
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
673-1180 |
9.72e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.45 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 673 DQLTVKLKQMENMVSVLQNELSETKKTK---LQLELQKIEWEKELY-DLRLALKQENEE-KRNADMLYNKDSEQLRIKE- 746
Cdd:COG5022 871 LQSAQRVELAERQLQELKIDVKSISSLKlvnLELESEIIELKKSLSsDLIENLEFKTELiARLKKLLNNIDLEEGPSIEy 950
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 747 ---EECGKVVETKQQLK---WNLRRLVK-------ELRTVRNNLDLVVQERNDAQKQLSEEQ-DARILQDQILTSKQKEL 812
Cdd:COG5022 951 vklPELNKLHEVESKLKetsEEYEDLLKkstilvrEGNKANSELKNFKKELAELSKQYGALQeSTKQLKELPVEVAELQS 1030
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 813 EMARKKMNSEISHRHQKEKDLfhedcMLQEEIALLRLEIDTIKNQNKQKEKKYFEDIEAVKEKNDNLQKIIKLNEETLTE 892
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKL-----KGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 893 TILQY-SGQLNNLTAE---NKILNSELENGKQNQERLEIEMESYRCRLAAAVRDCDQSQTARDLKLD-FQRTRQEWVRLH 967
Cdd:COG5022 1106 RNLVKpANVLQFIVAQmikLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPpFAALSEKRLYQS 1185
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 968 DKMKVDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLILERVQ-------RDLSQTQCQKKETEQMYQIE 1040
Cdd:COG5022 1186 ALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTslkgfnnLNKKFDTPASMSNEKLLSLL 1265
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1041 QS--KLKKYIAKQESVEERL--SQLQSENMLLRQQL-DDAHK---KANSQEKTSSTIQD----QFHSAAKNLQAESEKQ- 1107
Cdd:COG5022 1266 NSidNLLSSYKLEEEVLPATinSLLQYINVGLFNALrTKASSlrwKSATEVNYNSEELDdwcrEFEISDVDEELEELIQa 1345
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034602354 1108 --ILSLQEKN----KELMD--------EYNHLKERMDQCEKEKAGRKVVMREFQQEWTDlLKQQPTSEATSRCHINLDET 1173
Cdd:COG5022 1346 vkVLQLLKDDlnklDELLDacyslnpaEIQNLKSRYDPADKENNLPKEILKKIEALLIK-QELQLSLEGKDETEVHLSEI 1424
|
....*..
gi 1034602354 1174 QDSKKKL 1180
Cdd:COG5022 1425 FSEEKSL 1431
|
|
| |
