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Conserved domains on  [gi|1034595414|ref|XP_016878988|]
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ubiquitin carboxyl-terminal hydrolase 31 isoform X2 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10119344)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0004843
MEROPS:  C19
PubMed:  7845226|11517925
SCOP:  4003158

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
263-430 1.76e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 211.76  E-value: 1.76e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  263 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 342
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  343 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 422
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595414  423 TAYILFYQ 430
Cdd:cd02674    223 SAYILFYE 230
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
668-876 1.91e-03

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  668 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 747
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  748 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 827
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595414  828 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 876
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
263-430 1.76e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 211.76  E-value: 1.76e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  263 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 342
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  343 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 422
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595414  423 TAYILFYQ 430
Cdd:cd02674    223 SAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
244-429 1.63e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 1.63e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  244 IPDAESVRLQRERHHQpqtctlsQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 323
Cdd:pfam00443  150 LPIPGDSAELKTASLQ-------ICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWE 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  324 KLQNMVKFPLTgLDMTPHVVKRSQSswslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLW 403
Cdd:pfam00443  223 KLNTEVEFPLE-LDLSRYLAEELKP------------------KTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRW 283
                          170       180
                   ....*....|....*....|....*..
gi 1034595414  404 YCFDDSDVQQLSED-EVCTQTAYILFY 429
Cdd:pfam00443  284 YKFDDEKVTEVDEEtAVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
226-433 4.56e-41

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 163.13  E-value: 4.56e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  226 EWDKETRDFLFvntedeyipDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLP 305
Cdd:COG5560    647 EWEEKRYLSLF---------SYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLP 717
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  306 DVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVkrsqsswslpshwspwrrPYglgrDPEDYIYDLYAVCNHHGT 385
Cdd:COG5560    718 MILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEY------------------MV----DDPRLIYDLYAVDNHYGG 775
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1034595414  386 MQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRT 433
Cdd:COG5560    776 LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
668-876 1.91e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  668 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 747
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  748 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 827
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595414  828 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 876
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
 
Name Accession Description Interval E-value
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
263-430 1.76e-62

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 211.76  E-value: 1.76e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  263 CTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHV 342
Cdd:cd02674     84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  343 VKRSQsswslpshwspwrrpyglgrdPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQ 422
Cdd:cd02674    164 DTRSF---------------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

                   ....*...
gi 1034595414  423 TAYILFYQ 430
Cdd:cd02674    223 SAYILFYE 230
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
262-430 1.13e-41

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 153.41  E-value: 1.13e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  262 TCTLSQCFQLYTKEERLAPDDAWRCPHCKqLQQGSITLSLWTLPDVLIIHLKRFRQEGD-RRMKLQNMVKFPLTgLDMTP 340
Cdd:cd02257     98 QVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSFNEDgTKEKLNTKVSFPLE-LDLSP 175
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  341 HVVKRSQSSWSlpshwspwrrpyglgrDPEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEV 419
Cdd:cd02257    176 YLSEGEKDSDS----------------DNGSYKYELVAVVVHSGTsADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEV 239
                          170
                   ....*....|....*.
gi 1034595414  420 -----CTQTAYILFYQ 430
Cdd:cd02257    240 lefgsLSSSAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
244-429 1.63e-41

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 154.91  E-value: 1.63e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  244 IPDAESVRLQRERHHQpqtctlsQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM 323
Cdd:pfam00443  150 LPIPGDSAELKTASLQ-------ICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWE 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  324 KLQNMVKFPLTgLDMTPHVVKRSQSswslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLW 403
Cdd:pfam00443  223 KLNTEVEFPLE-LDLSRYLAEELKP------------------KTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRW 283
                          170       180
                   ....*....|....*....|....*..
gi 1034595414  404 YCFDDSDVQQLSED-EVCTQTAYILFY 429
Cdd:pfam00443  284 YKFDDEKVTEVDEEtAVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
226-433 4.56e-41

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 163.13  E-value: 4.56e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  226 EWDKETRDFLFvntedeyipDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLP 305
Cdd:COG5560    647 EWEEKRYLSLF---------SYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLP 717
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  306 DVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVkrsqsswslpshwspwrrPYglgrDPEDYIYDLYAVCNHHGT 385
Cdd:COG5560    718 MILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEY------------------MV----DDPRLIYDLYAVDNHYGG 775
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1034595414  386 MQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRT 433
Cdd:COG5560    776 LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
258-429 8.80e-38

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 144.44  E-value: 8.80e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  258 HQPQTCTLSQCFQLYTKEERLApDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQE-GDRRMKLQNMVKFPLTgL 336
Cdd:cd02660    171 GVSGTPTLSDCLDRFTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSlNKTSRKIDTYVQFPLE-L 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  337 DMTPHVVKRSQSSWSLPShwspwrrpyglgrDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSvDGLWYCFDDSDVQQLSE 416
Cdd:cd02660    249 NMTPYTSSSIGDTQDSNS-------------LDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSE 314
                          170
                   ....*....|...
gi 1034595414  417 DEVCTQTAYILFY 429
Cdd:cd02660    315 EEVLKSQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
264-429 1.60e-33

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 131.63  E-value: 1.60e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  264 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFrqEGDRRMKLQNMVKFPLTgLDMTPHVV 343
Cdd:cd02661    163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRF--SNFRGGKINKQISFPET-LDLSPYMS 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  344 KRSQSSwslpshwspwrrpyglgrdpedYIYDLYAVCNHHGTMQ-GGHYTAYCKNSvDGLWYCFDDSDVQQLSEDEVCTQ 422
Cdd:cd02661    240 QPNDGP----------------------LKYKLYAVLVHSGFSPhSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVLSQ 296

                   ....*..
gi 1034595414  423 TAYILFY 429
Cdd:cd02661    297 KAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
269-431 8.76e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 109.65  E-value: 8.76e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  269 FQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFR--QEGDRRMKLQNMVKFPLTgLDMTPHVVKrs 346
Cdd:cd02659    157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEfdFETMMRIKINDRFEFPLE-LDMEPYTEK-- 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  347 qsswslpshwSPWRRPYGLGRDP-EDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEV------ 419
Cdd:cd02659    234 ----------GLAKKEGDSEKKDsESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAeeecfg 303
                          170       180
                   ....*....|....*....|....*...
gi 1034595414  420 CTQT----------------AYILFYQR 431
Cdd:cd02659    304 GEETqktydsgprafkrttnAYMLFYER 331
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
263-430 7.73e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 105.55  E-value: 7.73e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  263 CTLSQCFQLYTKEERLAPDDAWRCPHCkqlQQGSITLSLWTLPDVLIIHLKRFRQEGDRRM-KLQNMVKFPLTgLDMTPH 341
Cdd:cd02667    111 CSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRSANLrKVSRHVSFPEI-LDLAPF 186
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  342 VVKRSQSSwslpshwspwrrpyglgRDPEDYIYDLYAVCNHHGTMQGGHYTAYCK---------------------NSVD 400
Cdd:cd02667    187 CDPKCNSS-----------------EDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrlsdltkskpaadeaGPGS 249
                          170       180       190
                   ....*....|....*....|....*....|
gi 1034595414  401 GLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 430
Cdd:cd02667    250 GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
264-429 1.69e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 96.72  E-value: 1.69e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  264 TLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRF---RQEGDRRmKLQNMVKFPLTgLDMTp 340
Cdd:cd02668    157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFvfdRKTGAKK-KLNASISFPEI-LDMG- 233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  341 hvvkrsqsswslpshwspwrrPYGLGRDPEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVDGLWYCFDDSDVQQL----- 414
Cdd:cd02668    234 ---------------------EYLAESDEGSYVYELSGVLIHQGVsAYSGHYIAHIKDEQTGEWYKFNDEDVEEMpgkpl 292
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1034595414  415 -------------SEDE---VCTQTAYILFY 429
Cdd:cd02668    293 klgnsedpakprkSEIKkgtHSSRTAYMLVY 323
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
260-430 1.44e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 90.45  E-value: 1.44e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  260 PQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGD--RRMKLQNMVKFPLTgld 337
Cdd:cd02663    144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQlnRYIKLFYRVVFPLE--- 220
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  338 mtphvvkrsqsswslpshwspwRRPYGLGRDPE--DYIYDLYAVCNHHGtmQG---GHYTAYCKnsVDGLWYCFDD---- 408
Cdd:cd02663    221 ----------------------LRLFNTTDDAEnpDRLYELVAVVVHIG--GGpnhGHYVSIVK--SHGGWLLFDDetve 274
                          170       180
                   ....*....|....*....|....*.
gi 1034595414  409 ----SDVQQLSEDEVCTQTAYILFYQ 430
Cdd:cd02663    275 kideNAVEEFFGDSPNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
289-431 2.28e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 83.70  E-value: 2.28e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  289 CKQLQQGSITlslwTLPDVLIIHLKRFRQEGDRRmKLQNMVKFPLtglDMTphvVKRSQSSWSLPSHwspwrrpyglgrd 368
Cdd:COG5533    168 AKQEYEVSFV----KLPKILTIQLKRFANLGGNQ-KIDTEVDEKF---ELP---VKHDQILNIVKET------------- 223
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595414  369 pedyIYDLYAVCNHHGTMQGGHYTAYCKnsVDGLWYCFDDSDVQQLSEDEVCT---QTAYILFYQR 431
Cdd:COG5533    224 ----YYDLVGFVLHQGSLEGGHYIAYVK--KGGKWEKANDSDVTPVSEEEAINekaKNAYLYFYER 283
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
240-429 2.94e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 78.40  E-value: 2.94e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  240 EDEYIPDAESVRLQRERhhQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEG 319
Cdd:cd02671    159 ESELSKSEESSEISPDP--KTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANG 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  320 DRRMKLQNMVKF--PLtgldMTPHVvkrsqsswsLPSHwspwrrpyGLGRDPEDYIYDLYAVCNHHG-TMQGGHYTAYCK 396
Cdd:cd02671    237 SEFDCYGGLSKVntPL----LTPLK---------LSLE--------EWSTKPKNDVYRLFAVVMHSGaTISSGHYTAYVR 295
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1034595414  397 nsvdglWYCFDDSDVQQLSEDEV---------CTQTAYILFY 429
Cdd:cd02671    296 ------WLLFDDSEVKVTEEKDFlealspntsSTSTPYLLFY 331
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
264-419 1.10e-14

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 79.14  E-value: 1.10e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  264 TLSQCFQLYTKEERLAPDDAWRCP-HCKQLQQGSITLSlwTLPDVLIIHLKRFRQEGDRRM--KLQNMVKFPLTgLDMTP 340
Cdd:COG5077    339 NLQESFRRYIQVETLDGDNRYNAEkHGLQDAKKGVIFE--SLPPVLHLQLKRFEYDFERDMmvKINDRYEFPLE-IDLLP 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  341 HV---VKRSQSSwslpshwspwrrpyglgrdpeDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSED 417
Cdd:COG5077    416 FLdrdADKSENS---------------------DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEK 474

                   ..
gi 1034595414  418 EV 419
Cdd:COG5077    475 EV 476
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
246-430 1.33e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 75.99  E-value: 1.33e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  246 DAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFR--QEGDRRM 323
Cdd:cd02664    117 NSTSARTERFRDLDLSFPSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSydQKTHVRE 196
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  324 KLQNMVKFPltgLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDpEDYIYDLYAVCNHHGT-MQGGHYTAYCKNSVD-- 400
Cdd:cd02664    197 KIMDNVSIN---EVLSLPVRVESKSSESPLEKKEEESGDDGELVT-RQVHYRLYAVVVHSGYsSESGHYFTYARDQTDad 272
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1034595414  401 ------------------GLWYCFDDSDVQQLSEDEV-------CTQTAYILFYQ 430
Cdd:cd02664    273 stgqecpepkdaeendesKNWYLFNDSRVTFSSFESVqnvtsrfPKDTPYILFYE 327
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
216-430 5.66e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 65.04  E-value: 5.66e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  216 GGTAHVKLVVEWDketrDFLFVNTEDEYIPDAESVRLQRERHHqpqtctLSQCFQLYTKEERLapDDawRCPHCKQLQQG 295
Cdd:cd02658    141 LSCKKVKYTSELS----EILSLPVPKDEATEKEEGELVYEPVP------LEDCLKAYFAPETI--ED--FCSTCKEKTTA 206
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  296 SITLSLWTLPDVLIIHLKRFR-QEGDRRMKLQNMVKFPltglDMtphvvkrsqsswslpshwspwrrpyglgRDPEDYiy 374
Cdd:cd02658    207 TKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVP----EE----------------------------LGPGKY-- 252
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034595414  375 DLYAVCNHHGT-MQGGHYTAYCKNSVD--GLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 430
Cdd:cd02658    253 ELIAFISHKGTsVHSGHYVAHIKKEIDgeGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
257-430 9.48e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 63.15  E-value: 9.48e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  257 HHQPQTCTLSQCFQLYTKEERLapDDAwRCPHCKQLqqgsitlsLWTLPDVLIIHLKRFrqEGDRRM---KLQNMVKFPL 333
Cdd:cd02662     90 QSSGSGTTLEHCLDDFLSTEII--DDY-KCDRCQTV--------IVRLPQILCIHLSRS--VFDGRGtstKNSCKVSFPE 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  334 TgldmtphvvkrsqsswsLPshwspwrrpyglgrdpeDYIYDLYAVCNHHGTMQGGHYTAY------------------- 394
Cdd:cd02662    157 R-----------------LP-----------------KVLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmr 202
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1034595414  395 -CKNSVDGLWYCFDDSDVQQLSEDEVCTQT-AYILFYQ 430
Cdd:cd02662    203 eGPSSTSHPWWRISDTTVKEVSESEVLEQKsAYMLFYE 240
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
304-429 1.06e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 60.81  E-value: 1.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  304 LPDVLIIHLKRF--RQEGDRRMKLQNMVKFPLTgLDMTPHVvkrSQSSwslpshwspwrrpyglgrdpedyIYDLYAVCN 381
Cdd:cd02657    196 LPKYLTVQFVRFfwKRDIQKKAKILRKVKFPFE-LDLYELC---TPSG-----------------------YYELVAVIT 248
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034595414  382 HHG-TMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCT-------QTAYILFY 429
Cdd:cd02657    249 HQGrSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKlsgggdwHIAYILLY 304
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
287-430 7.76e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 52.71  E-value: 7.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  287 PHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSwSLPSHwspwrrpyglg 366
Cdd:cd02669    315 KTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSL-NLSTK----------- 382
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034595414  367 rdpedyiYDLYAVCNHHGTMQG-GHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQ 430
Cdd:cd02669    383 -------YNLVANIVHEGTPQEdGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
304-430 1.42e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 47.52  E-value: 1.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  304 LPDVLIIHLKRFRQEGDRRMKLQNMVkFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDL-YAVCNH 382
Cdd:cd02670     98 APSCLIICLKRYGKTEGKAQKMFKKI-LIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLcSAVCHR 176
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034595414  383 HGTMQGGHYTAYCKNSVDGL-----------WYCFDDSD----VQQLS--EDEVCTQTAYILFYQ 430
Cdd:cd02670    177 GTSLETGHYVAFVRYGSYSLtetdneaynaqWVFFDDMAdrdgVSNGFniPAARLLEDPYMLFYQ 241
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
668-876 1.91e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  668 SPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSkadSS 747
Cdd:PHA03307   210 SSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGP---AS 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  748 SRGSGRHSSPAPAqpkkESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPAtrsPFPPGKSRTSDHSLSREGSR 827
Cdd:PHA03307   287 SSSSPRERSPSPS----PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA---AVSPGPSPSRSPSPSRPPPP 359
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1034595414  828 QSLGSDRASATSTSKPNSPRVSQARaGEGRGAGKHVRSSSMASLRSPST 876
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGR-PTRRRARAAVAGRARRRDATGRF 407
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
547-847 3.98e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 3.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  547 PSRFSGDSPIHSSASTLEKIGEAADDKVSiscFGSLRNLSSSYQEPSDSHSRREHKAVGRAPLAVMEGvfkdesDTRRLN 626
Cdd:PHA03307   140 PVGSPGPPPAASPPAAGASPAAVASDAAS---SRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP------RPPRRS 210
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  627 SSVVDTQSKHSAQGDRLPPLSGPFDNNNQIAYVDQSdsVDSSPVKEVKAPSHPGSLAKKPE---STTKRSPSSKGTSEPE 703
Cdd:PHA03307   211 SPISASASSPAPAPGRSAADDAGASSSDSSSSESSG--CGWGPENECPLPRPAPITLPTRIweaSGWNGPSSRPGPASSS 288
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034595414  704 KSLRKGRPAlASQESSLSSTSPSSPLPV-KVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQ 782
Cdd:PHA03307   289 SSPRERSPS-PSPSSPGSGPAPSSPRASsSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRK 367
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034595414  783 KSASALTYTASSTSAKKASGPATRSPfPPGKSRTSDHSLSREGSRQSLGSDRASATSTSKPNSPR 847
Cdd:PHA03307   368 RPRPSRAPSSPAASAGRPTRRRARAA-VAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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