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Conserved domains on  [gi|1031815719|ref|WP_064144551|]
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MULTISPECIES: polysaccharide biosynthesis tyrosine autokinase [Klebsiella]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 12-704 0e+00

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member PRK11519:

Pssm-ID: 476819 [Multi-domain]  Cd Length: 719  Bit Score: 943.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  12 DDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQPQSAPEISL 91
Cdd:PRK11519   14 GSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  92 IQSRMILGKTVDDLNLQIMIKQNYFPIFGQGFARLLGEKPSNIEVTRLYVTNANDDVTqLELKIKDGEHYQIKYDGAV-F 170
Cdd:PRK11519   94 IRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQV-FTLNVLDDKNYQLSSDGGFsA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 171 NGRVGELLENKQLAIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQGKDTGILSISYTGENPQLIKNIVNSISEN 250
Cdd:PRK11519  173 RGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 251 YLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLNELTFRESEISQ 330
Cdd:PRK11519  253 YLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 331 LYTKEHPTYKALMEKRKTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDD 410
Cdd:PRK11519  333 LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDP 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 411 AVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPVAESLVSNDRsIKNIRKKITH 490
Cdd:PRK11519  413 AITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDS-VKTIKGIKRY 491

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 491 KEyTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYV 570
Cdd:PRK11519  492 KQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 571 HKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVT 650
Cdd:PRK11519  571 HELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVT 650

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1031815719 651 DAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKASS 704
Cdd:PRK11519  651 DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
12-704 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 943.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  12 DDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQPQSAPEISL 91
Cdd:PRK11519   14 GSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  92 IQSRMILGKTVDDLNLQIMIKQNYFPIFGQGFARLLGEKPSNIEVTRLYVTNANDDVTqLELKIKDGEHYQIKYDGAV-F 170
Cdd:PRK11519   94 IRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQV-FTLNVLDDKNYQLSSDGGFsA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 171 NGRVGELLENKQLAIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQGKDTGILSISYTGENPQLIKNIVNSISEN 250
Cdd:PRK11519  173 RGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 251 YLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLNELTFRESEISQ 330
Cdd:PRK11519  253 YLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 331 LYTKEHPTYKALMEKRKTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDD 410
Cdd:PRK11519  333 LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDP 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 411 AVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPVAESLVSNDRsIKNIRKKITH 490
Cdd:PRK11519  413 AITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDS-VKTIKGIKRY 491

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 491 KEyTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYV 570
Cdd:PRK11519  492 KQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 571 HKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVT 650
Cdd:PRK11519  571 HELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVT 650

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1031815719 651 DAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKASS 704
Cdd:PRK11519  651 DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 13-696 2.12e-111

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 354.80  E-value: 2.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  13 DDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKqgnaiLSNLSQMLPDS------QPQSA 86
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPsnlfdlDTDAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  87 PEISLIQSRMILGKTVDDLNLQIMIK---QNYFPIFGQG----FARLLGEKPSNIEVTRLYVTNANDDVTQLELKIK-DG 158
Cdd:TIGR01005  76 AAIEILKSGELAGKAVDKLHLSENAKilnPPRFPVDLIGawikSAAGLFSEPGGFDLGEEAAGNERIDKAAADIPEAlAG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 159 EHYQIKYDGAV------------FNGRVGELLENKQL----AIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQG 222
Cdd:TIGR01005 156 EPFKLISLGAGafrledkllaapIAGGVAEALEADQLianfEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 223 KDTGILSI-SYTGENPQLIKNIVNSISENYLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLS 301
Cdd:TIGR01005 236 AQGEIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLS 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 302 LEAKAVLDQIVNVDNQLNELTFRESEISQLYTKEHPTYKALMEKRKTLQEEKLR-LNKKVSSMPETQQEILRLSRDVESG 380
Cdd:TIGR01005 316 DEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIEESLRGKINgIAGKLKDAPEIEQDLRELEQDAAAD 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 381 RAVYMQLLNRQQELNIAKSSAIGNVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEI 460
Cdd:TIGR01005 396 KELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEH 475

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 461 -GINVYASVPVAES-------LVSNDR-SIKNIRKKITHKEYTGLLA---TTNPADLAIEAIRGLRTSLHFAMIEARNNI 528
Cdd:TIGR01005 476 lGHRSLATVPLLDTqmdkkaqLTHAHFgSVKRHDEAVDDTMPFQLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 529 LMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFIS 608
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 609 RGVV---PPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQ 685
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730
                  ....*....|.
gi 1031815719 686 SGIVAKGCILN 696
Cdd:TIGR01005 716 ANSDVLGVIFN 726
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-704 1.03e-91

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 300.40  E-value: 1.03e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719   1 MSSATSkNILKDDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMlPD 80
Cdd:COG3206     1 MNESSS-APPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL-SA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  81 SQPQSAPEISLIQSRMILGKTVDDLNLQimikqnyfpifgqgfarllgEKPSNIEVTRLyvtnanddvtqlelkikdgeh 160
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLD--------------------EDPLGEEASRE--------------------- 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 161 yqikydgavfngrvgellenkqlaikvndisakpgdtftiyyfnrlKAIADLLDNLNVSDQgKDTGILSISYTGENPQLI 240
Cdd:COG3206   118 ----------------------------------------------AAIERLRKNLTVEPV-KGSNVIEISYTSPDPELA 150

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 241 KNIVNSISENYLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLN- 319
Cdd:COG3206   151 AAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAe 230

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 320 -------------------------------------------ELTFRESEISQLYTKEHPTYKALMEKR---------- 346
Cdd:COG3206   231 araelaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqe 310

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 347 -------------------KTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRI 407
Cdd:COG3206   311 aqrilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRV 390

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 408 IDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPvaeslvsndRSIKNIRKK 487
Cdd:COG3206   391 IDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPL---------PPLKSKRER 461

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 488 ITHKEYTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRK 567
Cdd:COG3206   462 RRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLL 541

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 568 GYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPIL 647
Cdd:COG3206   542 LLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLA 621

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1031815719 648 AVTDAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKASS 704
Cdd:COG3206   622 ALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYY 678
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 508-697 1.74e-67

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 220.13  E-value: 1.74e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 508 EAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLS 587
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 588 GKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVAR 667
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1031815719 668 FELNTVKEMDVAFKRFEQSGIVAKGCILNG 697
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 365-446 2.51e-36

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 131.18  E-value: 2.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 365 ETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLR 444
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 1031815719 445 IM 446
Cdd:pfam13807  81 RA 82
ParA_partition NF041546
ParA family partition ATPase;
538-655 2.05e-04

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 42.92  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 538 AGKTFISSNLAAVVAQTGKKVLFIDTD----------MRKGyvhkvfdvendnglsnylsgklgleatlkkipEAGFDFI 607
Cdd:NF041546   11 VGKTTLATHLAAALARRGYRVLLVDADpqgsaldwaaARED--------------------------------ERPFPVV 58

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1031815719 608 SrgvvPPNPTellMHRRMEEMlkwaSQNYDLVILDTPPilAVTDAAII 655
Cdd:NF041546   59 G----LARPT---LHRELPSL----ARDYDFVVIDGPP--RAEDLARS 93
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
12-704 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 943.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  12 DDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQPQSAPEISL 91
Cdd:PRK11519   14 GSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  92 IQSRMILGKTVDDLNLQIMIKQNYFPIFGQGFARLLGEKPSNIEVTRLYVTNANDDVTqLELKIKDGEHYQIKYDGAV-F 170
Cdd:PRK11519   94 IRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQV-FTLNVLDDKNYQLSSDGGFsA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 171 NGRVGELLENKQLAIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQGKDTGILSISYTGENPQLIKNIVNSISEN 250
Cdd:PRK11519  173 RGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 251 YLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLNELTFRESEISQ 330
Cdd:PRK11519  253 YLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 331 LYTKEHPTYKALMEKRKTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDD 410
Cdd:PRK11519  333 LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDP 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 411 AVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPVAESLVSNDRsIKNIRKKITH 490
Cdd:PRK11519  413 AITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDS-VKTIKGIKRY 491

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 491 KEyTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYV 570
Cdd:PRK11519  492 KQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 571 HKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVT 650
Cdd:PRK11519  571 HELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVT 650

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1031815719 651 DAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKASS 704
Cdd:PRK11519  651 DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
PRK09841 PRK09841
tyrosine-protein kinase;
13-703 0e+00

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 914.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  13 DDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQPQSAPEISLI 92
Cdd:PRK09841   15 ENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  93 QSRMILGKTVDDLNLQIMIKQNYFPIFGQGFARLLGEKPSNIEVTRLYVTNANDDVTQLELKIKDGEHYQIKYDGAVFNG 172
Cdd:PRK09841   95 QSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNG 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 173 RVGELLENKQLAIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQGKDTGILSISYTGENPQLIKNIVNSISENYL 252
Cdd:PRK09841  175 MVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 253 AQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLNELTFRESEISQLY 332
Cdd:PRK09841  255 QQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 333 TKEHPTYKALMEKRKTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDDAV 412
Cdd:PRK09841  335 KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAV 414

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 413 TQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPVAESL--VSNDRSIKNIRKKITH 490
Cdd:PRK09841  415 TQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLdkRTRLRKKNLFSNQQRH 494

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 491 K-EYTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGY 569
Cdd:PRK09841  495 RtKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 574

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 570 VHKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAV 649
Cdd:PRK09841  575 SHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAV 654

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1031815719 650 TDAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKAS 703
Cdd:PRK09841  655 SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 13-696 2.12e-111

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 354.80  E-value: 2.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  13 DDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKqgnaiLSNLSQMLPDS------QPQSA 86
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPsnlfdlDTDAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  87 PEISLIQSRMILGKTVDDLNLQIMIK---QNYFPIFGQG----FARLLGEKPSNIEVTRLYVTNANDDVTQLELKIK-DG 158
Cdd:TIGR01005  76 AAIEILKSGELAGKAVDKLHLSENAKilnPPRFPVDLIGawikSAAGLFSEPGGFDLGEEAAGNERIDKAAADIPEAlAG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 159 EHYQIKYDGAV------------FNGRVGELLENKQL----AIKVNDISAKPGDTFTIYYFNRLKAIADLLDNLNVSDQG 222
Cdd:TIGR01005 156 EPFKLISLGAGafrledkllaapIAGGVAEALEADQLianfEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 223 KDTGILSI-SYTGENPQLIKNIVNSISENYLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLS 301
Cdd:TIGR01005 236 AQGEIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLS 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 302 LEAKAVLDQIVNVDNQLNELTFRESEISQLYTKEHPTYKALMEKRKTLQEEKLR-LNKKVSSMPETQQEILRLSRDVESG 380
Cdd:TIGR01005 316 DEFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIEESLRGKINgIAGKLKDAPEIEQDLRELEQDAAAD 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 381 RAVYMQLLNRQQELNIAKSSAIGNVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEI 460
Cdd:TIGR01005 396 KELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEH 475

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 461 -GINVYASVPVAES-------LVSNDR-SIKNIRKKITHKEYTGLLA---TTNPADLAIEAIRGLRTSLHFAMIEARNNI 528
Cdd:TIGR01005 476 lGHRSLATVPLLDTqmdkkaqLTHAHFgSVKRHDEAVDDTMPFQLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 529 LMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFIS 608
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 609 RGVV---PPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQ 685
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730
                  ....*....|.
gi 1031815719 686 SGIVAKGCILN 696
Cdd:TIGR01005 716 ANSDVLGVIFN 726
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-704 1.03e-91

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 300.40  E-value: 1.03e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719   1 MSSATSkNILKDDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMlPD 80
Cdd:COG3206     1 MNESSS-APPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL-SA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  81 SQPQSAPEISLIQSRMILGKTVDDLNLQimikqnyfpifgqgfarllgEKPSNIEVTRLyvtnanddvtqlelkikdgeh 160
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLD--------------------EDPLGEEASRE--------------------- 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 161 yqikydgavfngrvgellenkqlaikvndisakpgdtftiyyfnrlKAIADLLDNLNVSDQgKDTGILSISYTGENPQLI 240
Cdd:COG3206   118 ----------------------------------------------AAIERLRKNLTVEPV-KGSNVIEISYTSPDPELA 150

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 241 KNIVNSISENYLAQNISRQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSLEAKAVLDQIVNVDNQLN- 319
Cdd:COG3206   151 AAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAe 230

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 320 -------------------------------------------ELTFRESEISQLYTKEHPTYKALMEKR---------- 346
Cdd:COG3206   231 araelaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqe 310

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 347 -------------------KTLQEEKLRLNKKVSSMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRI 407
Cdd:COG3206   311 aqrilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRV 390

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 408 IDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEIGINVYASVPvaeslvsndRSIKNIRKK 487
Cdd:COG3206   391 IDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPL---------PPLKSKRER 461

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 488 ITHKEYTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRK 567
Cdd:COG3206   462 RRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLL 541

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 568 GYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPIL 647
Cdd:COG3206   542 LLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLA 621

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1031815719 648 AVTDAAIIGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIVKKASS 704
Cdd:COG3206   622 ALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYY 678
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 508-697 1.74e-67

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 220.13  E-value: 1.74e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 508 EAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLS 587
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 588 GKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVAR 667
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1031815719 668 FELNTVKEMDVAFKRFEQSGIVAKGCILNG 697
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 443-703 2.09e-56

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 194.25  E-value: 2.09e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 443 LRIMLRRGIETPEQLEEIGINVYASVPVAESLVSNDRSIKNIRKKITHKEYTGLLATTNPADLAIEAIRGLRTSLHFAMI 522
Cdd:COG0489     9 LLLREEAQALLLLLLLLLLLLRLEEAAAAAALAAAAPAAAAPAPLPPAPALLLLLLLLLGLLLLLLLALALLLLLLLLLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 523 EARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEA 602
Cdd:COG0489    89 RLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 603 GFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVARFELNTVKEMDVAFKR 682
Cdd:COG0489   169 GLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEM 248

                         250       260
                  ....*....|....*....|.
gi 1031815719 683 FEQSGIVAKGCILNGIVKKAS 703
Cdd:COG0489   249 LEKAGVPVLGVVLNMVCPKGE 269
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 508-698 1.44e-41

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 150.28  E-value: 1.44e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 508 EAIRGLRTSLHFAMieARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDN-GLSNYL 586
Cdd:TIGR01007   1 EYYNAIRTNIQFSG--AEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 587 SGKLGLEATLKKIPEAGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAIIGHYAGTTLLVA 666
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1031815719 667 RFELNTVKEMDVAFKRFEQSGIVAKGCILNGI 698
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKV 190
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 365-446 2.51e-36

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 131.18  E-value: 2.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 365 ETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLR 444
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 1031815719 445 IM 446
Cdd:pfam13807  81 RA 82
EpsG TIGR03029
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ...
 496-696 1.52e-32

chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).


Pssm-ID: 132074 [Multi-domain]  Cd Length: 274  Bit Score: 127.29  E-value: 1.52e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 496 LLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFD 575
Cdd:TIGR03029  73 LIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFK 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 576 VENDNGLSNYLSGKLGLEAtLKKIPE-AGFDFISRGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAI 654
Cdd:TIGR03029 153 LSEQRGLSDILAGRSDLEV-ITHIPAlENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQI 231

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1031815719 655 IGHYAGTTLLVARFELNTVKEMDVAFKRFEQSGIVAKGCILN 696
Cdd:TIGR03029 232 VATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 14-104 4.01e-24

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 96.59  E-value: 4.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  14 DEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQPQSApEISLIQ 93
Cdd:pfam02706   1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKKGEAGSLLGSDLQAGLQLAST-EIEILK 79

                          90
                  ....*....|.
gi 1031815719  94 SRMILGKTVDD 104
Cdd:pfam02706  80 SRDVLEKVIDE 90
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 1-449 4.59e-16

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 80.40  E-value: 4.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719   1 MSSATSKNILK------DDDEMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANsliqveqkqgnAILSnl 74
Cdd:COG3765     1 MSSEESKQLYPnqyppsQDDEIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTST-----------AIVD-- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  75 sqmlpdsqpqsAPEISLIQSrmilgktvddLNLQimikqnyfpifgQGFARLLGEKPSNIEVTR-----LYVTNANDDVT 149
Cdd:COG3765    68 -----------PPTVNELGG----------YYSQ------------RQFLRNLDVKSVDPPVISselfnEFIKQLSSYDL 114

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 150 QLElkikdgehYQIKYDgaVFNGRVGELLENKQLAIK--VNDISAKPGDtftiyyfnrlkaiadlldnlnVSDQGKDTGI 227
Cdd:COG3765   115 RRE--------FLLQSD--YYKQLQEGDEKEDAALLDelINNISITPPD---------------------DKKKSSPYTN 163

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 228 LSISYTGENPQLIKNIVNsiseNYLaQNISRQAAQDaksldflniqlpkVRNDLDIA-ENKLNAYRRQSDSVDLSLEAK- 305
Cdd:COG3765   164 YSVSFTAETPEDAQQLLR----GYI-DFANQRVLKE-------------LNEELQGAiAARLQSLKAQIKRLEEVAKAQr 225

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 306 ----AVLDQIVNVDNQLNELTFRESEISQLYTKEHPTYKALMeKRKTLQEEKlrlnkkvssmpetqqEILRLSRDVESGR 381
Cdd:COG3765   226 qrriERLKYALKIAQAAGIKKPVYSNGQTPAVKLDPSYLFLL-GTDALQAEL---------------EILKARGDDYPLN 289

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1031815719 382 AVYMQLLNRQQELN---IAKSSAIGnVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRR 449
Cdd:COG3765   290 ADLYQLQAQLAQLNalpIDDVGFQP-FRYLRTPEEPVKKDKPKRALILVLGALLGGMLGVGVVLIRHALRS 359
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
338-566 5.81e-13

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 70.48  E-value: 5.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 338 TYKALMEKRKTLQE--EKLRLNK---------KVSSMPETQqeILRLSrdVESGRAvymqllnrQQELNIAKSSA----- 401
Cdd:COG3944    72 TYAELLKSPAVLEEviDELGLDLspeelakkiSVTSPPDTQ--VITIT--VTDTDP--------ERAADIANAVAevfae 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 402 -------IGNVRIIDDAVTQLKPVKPKKILVVIIGFILGLSIAIGVVFLRIMLRRGIETPEQLEEI-GInvyasvpvaes 473
Cdd:COG3944   140 evkelmkVDNVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERLlGL----------- 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 474 lvsndrsIKNIRKKITHKEYTGLLATTNPADLAIEAIRGLRTSLHFAMIEARNNILMISgASPNAGKTFISSNLAAVVAQ 553
Cdd:COG3944   209 -------LLGGAVPAARSARPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVS-SSLSEGKSTTTAALALALAA 280

                         250
                  ....*....|...
gi 1031815719 554 TGKKVLFIDTDMR 566
Cdd:COG3944   281 AAAGVVLVLADLD 293
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 542-645 1.21e-10

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 62.21  E-value: 1.21e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 542 FISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEaGFDFISRGVVPPNPTELLM 621
Cdd:COG0455     1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGPG-GLDVLPGGSGPAELAELDP 79

                          90       100
                  ....*....|....*....|....
gi 1031815719 622 HRRMEEMLKWASQNYDLVILDTPP 645
Cdd:COG0455    80 EERLIRVLEELERFYDVVLVDTGA 103
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 502-688 2.95e-10

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 62.44  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 502 PADLAIEAIRGLRTSLHfamiEARNNILMISGASPNAGKTFISSNLAAVVAQ-TGKKVLFIDTDMRKGYVHKVFDVENDN 580
Cdd:COG4963    82 SPDELRAALARLLDPGA----ARRGRVIAVVGAKGGVGATTLAVNLAWALAReSGRRVLLVDLDLQFGDVALYLDLEPRR 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 581 GLSNYLSG-----KLGLEATLKKIPEaGFDFISrGVVPPNPTELLMHRRMEEMLKWASQNYDLVILDTPPILAVTDAAII 655
Cdd:COG4963   158 GLADALRNpdrldETLLDRALTRHSS-GLSVLA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGLNPWTLAAL 235

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1031815719 656 GHyAGTTLLVARFELNTVKEMDVAFKRFEQSGI 688
Cdd:COG4963   236 EA-ADEVVLVTEPDLPSLRNAKRLLDLLRELGL 267
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 539-655 1.11e-09

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 59.49  E-value: 1.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 539 GKTFISSNLAAVVAQTGKKVLFIDTD----MRKGYvhKVFDVENDNGLSNYLSGKLGLEATLKKIPEAGFDfisrgVVPP 614
Cdd:COG1192    14 GKTTTAVNLAAALARRGKRVLLIDLDpqgnLTSGL--GLDPDDLDPTLYDLLLDDAPLEDAIVPTEIPGLD-----LIPA 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1031815719 615 NP------TELLMHRRMEEMLKWA----SQNYDLVILDTPPILAV-TDAAII 655
Cdd:COG1192    87 NIdlagaeIELVSRPGRELRLKRAlaplADDYDYILIDCPPSLGLlTLNALA 138
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 539-645 2.74e-09

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 57.96  E-value: 2.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 539 GKTFISSNLAAVVAQTGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIPEaGFDFISRGVVPPNPTE 618
Cdd:cd02038    13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEGPE-GLDIIPGGSGMEELAN 91

                          90       100
                  ....*....|....*....|....*....
gi 1031815719 619 L--LMHRRMEEMLKWASQNYDLVILDTPP 645
Cdd:cd02038    92 LdpEQKAKLIEELSSLESNYDYLLIDTGA 120
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
15-109 4.38e-08

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 55.46  E-value: 4.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  15 EMDLGKLIGELIDHRKLIIAITSFCTLISLVYAIFATPIYQANSLIQVEQKQGNAILSNLSQMLPDSQP-QSAPEIslIQ 93
Cdd:COG3944     1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVSTSSGSDASDLYQGIQTAQQLvNTYAEL--LK 78

                          90
                  ....*....|....*.
gi 1031815719  94 SRMILGKTVDDLNLQI 109
Cdd:COG3944    79 SPAVLEEVIDELGLDL 94
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 529-650 2.40e-07

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 52.35  E-value: 2.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 529 LMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTD----MRKGYVHKVFDVENDNGLSNYLSGKLGLEATLKKIP--EA 602
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpqsnNSSVEGLEGDIAPALQALAEGLKGRVNLDPILLKEKsdEG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1031815719 603 GFDFISRGVVPPNPTELLMHRRMEEMLKWA----SQNYDLVILDTPPILAVT 650
Cdd:pfam01656  81 GLDLIPGNIDLEKFEKELLGPRKEERLREAlealKEDYDYVIIDGAPGLGEL 132
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 539-647 8.53e-06

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 46.81  E-value: 8.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 539 GKTFISSNLAAVVAQTGKKVLFIDTDMR----KGYVHKVFDVENDngLSNYLSGKLGLEATLKKIPEAGFDFIsrgvvPP 614
Cdd:pfam13614  14 GKTTTSVNLAAALAKKGKKVLLIDLDPQgnatSGLGIDKNNVEKT--IYELLIGECNIEEAIIKTVIENLDLI-----PS 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1031815719 615 N------PTELLM----HRRMEEMLKWASQNYDLVILDTPPIL 647
Cdd:pfam13614  87 NidlagaEIELIGienrENILKEALEPVKDNYDYIIIDCPPSL 129
ParA_partition NF041546
ParA family partition ATPase;
538-655 2.05e-04

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 42.92  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 538 AGKTFISSNLAAVVAQTGKKVLFIDTD----------MRKGyvhkvfdvendnglsnylsgklgleatlkkipEAGFDFI 607
Cdd:NF041546   11 VGKTTLATHLAAALARRGYRVLLVDADpqgsaldwaaARED--------------------------------ERPFPVV 58

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1031815719 608 SrgvvPPNPTellMHRRMEEMlkwaSQNYDLVILDTPPilAVTDAAII 655
Cdd:NF041546   59 G----LARPT---LHRELPSL----ARDYDFVVIDGPP--RAEDLARS 93
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
258-373 5.46e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 5.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719  258 RQAAQDAKSLDFLNIQLPKVRNDLDIAENKLNAYRRQSDSVDLSL--EAKAVLDQIVNVDNQLNELTFRESEISQLYTKE 335
Cdd:COG4913    331 QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpaSAEEFAALRAEAAALLEALEEELEALEEALAEA 410

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1031815719  336 HPTYKALMEKRKTLQEEKLRLNKKVSSMPETQQEILRL 373
Cdd:COG4913    411 EAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 538-564 1.20e-03

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 39.45  E-value: 1.20e-03
                          10        20
                  ....*....|....*....|....*..
gi 1031815719 538 AGKTFISSNLAAVVAQTGKKVLFIDTD 564
Cdd:cd02042    12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 533-688 1.24e-03

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 41.11  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 533 GASPNAGKTFISSNLAAVVAQ-TGKKVLFIDTDMRKGYVHKVFDVENDNGLSNYLS-----GKLGLEATLKKIPeAGFDF 606
Cdd:cd03111     7 GAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIQnldrlDRTLLDSAVTRHS-SGLSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 607 ISRgvvppnPTELLMHRRMEE-----MLKWASQNYDLVILDTPPILAVTDAAIIGHyAGTTLLVARFELNTVKEMDVAFK 681
Cdd:cd03111    86 LPA------PQELEDLEALGAeqvdkLLQVLRAFYDHIIVDLGHFLDEVTLAVLEA-ADEILLVTQQDLPSLRNARRLLD 158


                  ....*..
gi 1031815719 682 RFEQSGI 688
Cdd:cd03111   159 SLRELEG 165
RepA COG3598
RecA-family ATPase [Replication, recombination and repair];
524-643 1.77e-03

RecA-family ATPase [Replication, recombination and repair];


Pssm-ID: 442817 [Multi-domain]  Cd Length: 313  Bit Score: 41.04  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 524 ARNNILMISGAsPNAGKTFISSNLAAVVAqTGK----------KVLFIDTDMRKGYVHK-VFDVENDNGLSnylsgklgl 592
Cdd:COG3598    11 PEGGVTLLAGP-PGTGKSFLALQLAAAVA-AGGpwlgrrvppgKVLYLAAEDDRGELRRrLKALGADLGLP--------- 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1031815719 593 eatlKKIPEAGFDFISrGVVPPNPTELLmhRRMEEMLKwaSQNYDLVILDT 643
Cdd:COG3598    80 ----FADLDGRLRLLS-LAGDLDDTDDL--EALERAIE--EEGPDLVVIDP 121
radB PRK09361
DNA repair and recombination protein RadB; Provisional
 536-642 4.03e-03

DNA repair and recombination protein RadB; Provisional


Pssm-ID: 236482 [Multi-domain]  Cd Length: 225  Bit Score: 39.46  E-value: 4.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 536 PNAGKTFISSNLAAVVAQTGKKVLFIDTDmrkgyvhkvfdvendnGLSnylsgklgLEaTLKKIPEAGFDFISRGVVPPN 615
Cdd:PRK09361   32 PGSGKTNICLQLAVEAAKNGKKVIYIDTE----------------GLS--------PE-RFKQIAGEDFEELLSNIIIFE 86

                          90       100
                  ....*....|....*....|....*...
gi 1031815719 616 PTELLMHRR-MEEMLKWASQNYDLVILD 642
Cdd:PRK09361   87 PSSFEEQSEaIRKAEKLAKENVGLIVLD 114
ArsA cd02035
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the ...
 539-699 5.94e-03

Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.


Pssm-ID: 349755 [Multi-domain]  Cd Length: 250  Bit Score: 39.03  E-value: 5.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 539 GKTFISSNLAAVVAQTGKKVLFIDTD----------MRKGYVHKVFDVEN--------DNGLSNYLSGKLGLEATLKKIP 600
Cdd:cd02035    12 GKTTIAAATAVRLAEQGKRVLLVSTDpahslsdafgQKLGGETPVKGAPNlwameidpEEALEEYWEEVKELLAQYLRLP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1031815719 601 EAGFDFISRGVVPPNPTELLMhrrMEEMLKW-ASQNYDLVILDTPP---------------ILAVTDAAIighyagTTL- 663
Cdd:cd02035    92 GLDEVYAEELLSLPGMDEAAA---FDELREYvESGEYDVIVFDTAPtghtlrllslpleqvRELLRDPER------TTFv 162

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1031815719 664 LVARFELNTVKEMDVAFKRFEQSGIVAKGCILNGIV 699
Cdd:cd02035   163 LVTIPEKLSIYETERLWGELQQYGIPVDGVVVNQVL 198
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 527-564 5.96e-03

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 37.03  E-value: 5.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1031815719 527 NILMISGASPNAGKTFISSNLAAVVAQTGKKVLFIDTD 564
Cdd:cd01983     1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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