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Conserved domains on  [gi|10312177|gb|AAG16696|]
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cytochrome b, partial (mitochondrion) [Otus megalotis]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-128 2.07e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 289.49  E-value: 2.07e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNP 174
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-128 2.07e-99

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 289.49  E-value: 2.07e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNP 174
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-128 5.95e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.95  E-value: 5.95e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177   1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGVILLLTL 78
Cdd:cd00284  38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 10312177  79 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:cd00284 118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-128 1.16e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.97  E-value: 1.16e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177   1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGVILLL 76
Cdd:COG1290  55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 10312177  77 TLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:COG1290 133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-127 1.50e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 163.71  E-value: 1.50e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177     1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGVILLLTL 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 10312177    79 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQ 157
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-128 2.07e-99

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 289.49  E-value: 2.07e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNP 174
CYTB MTH00131
cytochrome b; Provisional
 1-128 9.98e-89

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 262.28  E-value: 9.98e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00131  46 LTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMM 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00131 126 TAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNA 173
CYTB MTH00074
cytochrome b; Provisional
 1-127 1.05e-87

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 259.61  E-value: 1.05e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00074  47 ITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00074 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDK 173
CYTB MTH00156
cytochrome b; Provisional
 1-128 1.16e-87

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 258.56  E-value: 1.16e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00156  36 ITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMA 115

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00156 116 TAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163
CYTB MTH00100
cytochrome b; Provisional
 1-128 1.02e-86

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 256.87  E-value: 1.02e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00100  46 LTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMA 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00100 126 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173
CYTB MTH00191
cytochrome b; Provisional
 1-128 9.47e-84

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 249.06  E-value: 9.47e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00191  43 LTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMA 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00191 123 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNA 170
CYTB MTH00145
cytochrome b; Provisional
 1-128 4.12e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 237.50  E-value: 4.12e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00145  47 LTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMG 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00145 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNA 174
CYTB MTH00034
cytochrome b; Validated
 1-128 3.28e-78

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 235.37  E-value: 3.28e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00034  46 ITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTML 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00034 126 TAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNA 173
CYTB MTH00016
cytochrome b; Validated
 1-128 9.12e-76

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 229.18  E-value: 9.12e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00016  47 LTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:MTH00016 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNA 174
CYTB MTH00224
cytochrome b; Provisional
 1-127 7.21e-64

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 198.61  E-value: 7.21e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00224  47 LTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMA 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00224 127 TAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDN 173
CYTB MTH00022
cytochrome b; Validated
 1-127 2.72e-62

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 194.53  E-value: 2.72e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00022  45 ITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMA 124

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00022 125 TAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSN 171
CYTB MTH00053
cytochrome b; Provisional
 1-127 2.06e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 192.23  E-value: 2.06e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00053  47 ITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMIL 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00053 127 TAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSN 173
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-128 5.95e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.95  E-value: 5.95e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177   1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGVILLLTL 78
Cdd:cd00284  38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 10312177  79 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:cd00284 118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-128 1.16e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.97  E-value: 1.16e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177   1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGVILLL 76
Cdd:COG1290  55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 10312177  77 TLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 128
Cdd:COG1290 133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-127 1.50e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 163.71  E-value: 1.50e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177     1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGVILLLTL 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 10312177    79 MATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQ 157
CYTB MTH00033
cytochrome b; Provisional
 1-127 2.10e-50

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 164.34  E-value: 2.10e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00033  43 LTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMML 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00033 123 TAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSN 169
CYTB MTH00086
cytochrome b; Provisional
 1-127 1.96e-48

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 158.18  E-value: 1.96e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00086  35 LTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMM 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00086 115 EAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSS 161
CYTB MTH00046
cytochrome b; Validated
 1-127 1.20e-33

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 119.70  E-value: 1.20e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    1 ITGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMA 80
Cdd:MTH00046  37 LTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMV 116

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 10312177   81 TAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 127
Cdd:MTH00046 117 EAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTG 163
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
43-127 1.08e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 89.61  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    43 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 120
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80


                  ....*..
gi 10312177   121 GGFSVDN 127
Cdd:pfam13631  81 GGPFPGT 87
PRK03735 PRK03735
cytochrome b6; Provisional
 2-125 8.79e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 80.91  E-value: 8.79e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    2 TGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLM 79
Cdd:PRK03735  58 SGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTV 137

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 10312177   80 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSV 125
Cdd:PRK03735 138 GLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIV 183
petB CHL00070
cytochrome b6
 2-125 8.26e-19

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 78.22  E-value: 8.26e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10312177    2 TGLLLAAHYTADSTLAFSSVAHTCRNMQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLM 79
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 10312177   80 ATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSV 125
Cdd:CHL00070 130 SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSV 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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