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Conserved domains on  [gi|1028356561|ref|YP_009252365|]
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replication associated protein [Faeces associated gemycircularvirus 19]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_AL1_M super family cl07042
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 118-213 4.85e-13

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


The actual alignment was detected with superfamily member pfam08283:

Pssm-ID: 285483  Cd Length: 107  Bit Score: 64.55  E-value: 4.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561 118 WREIVGAEGREEFLDLVRQLDPKSFVLKHQEIVRYADIFFAEDREPYVGPdgirFELGMVPQLDE----WRRESLGDNPV 193
Cdd:pfam08283  10 AKAIINATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPP----FPLSSFTNLPEemqdWVDDYFGVVSA 85

                          90       100
                  ....*....|....*....|..
gi 1028356561 194 EGKSR--SLVLYGPSRLGKTIW 213
Cdd:pfam08283  86 ARPMRpkSIIVEGESRTGKTMW 107
Gemini_AL1 super family cl02967
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 4-102 9.21e-09

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


The actual alignment was detected with superfamily member pfam00799:

Pssm-ID: 366313  Cd Length: 113  Bit Score: 52.55  E-value: 9.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561   4 FHFSARYVLLTYPQSGELSEWAvLDHISGLGAEC-----IIGREDHADGGTHLHVFADFGRKKQSRRGDYFDVGGK---- 74
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEA-LTQIQKLQTNTnkkyiKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPtrsa 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 1028356561  75 --HPNVVPSKGRPEGGwDYATKDGNVVAGG 102
Cdd:pfam00799  80 hfHPNIQGAKSSSDVR-SYVDKDGDTIEWG 108
 
Name Accession Description Interval E-value
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 118-213 4.85e-13

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 64.55  E-value: 4.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561 118 WREIVGAEGREEFLDLVRQLDPKSFVLKHQEIVRYADIFFAEDREPYVGPdgirFELGMVPQLDE----WRRESLGDNPV 193
Cdd:pfam08283  10 AKAIINATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPP----FPLSSFTNLPEemqdWVDDYFGVVSA 85

                          90       100
                  ....*....|....*....|..
gi 1028356561 194 EGKSR--SLVLYGPSRLGKTIW 213
Cdd:pfam08283  86 ARPMRpkSIIVEGESRTGKTMW 107
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 4-102 9.21e-09

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 52.55  E-value: 9.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561   4 FHFSARYVLLTYPQSGELSEWAvLDHISGLGAEC-----IIGREDHADGGTHLHVFADFGRKKQSRRGDYFDVGGK---- 74
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEA-LTQIQKLQTNTnkkyiKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPtrsa 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 1028356561  75 --HPNVVPSKGRPEGGwDYATKDGNVVAGG 102
Cdd:pfam00799  80 hfHPNIQGAKSSSDVR-SYVDKDGDTIEWG 108
 
Name Accession Description Interval E-value
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 118-213 4.85e-13

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 64.55  E-value: 4.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561 118 WREIVGAEGREEFLDLVRQLDPKSFVLKHQEIVRYADIFFAEDREPYVGPdgirFELGMVPQLDE----WRRESLGDNPV 193
Cdd:pfam08283  10 AKAIINATSKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPP----FPLSSFTNLPEemqdWVDDYFGVVSA 85

                          90       100
                  ....*....|....*....|..
gi 1028356561 194 EGKSR--SLVLYGPSRLGKTIW 213
Cdd:pfam08283  86 ARPMRpkSIIVEGESRTGKTMW 107
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 4-102 9.21e-09

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 52.55  E-value: 9.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028356561   4 FHFSARYVLLTYPQSGELSEWAvLDHISGLGAEC-----IIGREDHADGGTHLHVFADFGRKKQSRRGDYFDVGGK---- 74
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEA-LTQIQKLQTNTnkkyiKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSPtrsa 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 1028356561  75 --HPNVVPSKGRPEGGwDYATKDGNVVAGG 102
Cdd:pfam00799  80 hfHPNIQGAKSSSDVR-SYVDKDGDTIEWG 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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