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Conserved domains on  [gi|1026355795|gb|ANC95296|]
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cytochrome oxidase subunit 1, partial (mitochondrion) [Lomentaria sp. 1LH]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-221 7.82e-125

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member cd01663:

Pssm-ID: 469701  Cd Length: 488  Bit Score: 361.80  E-value: 7.82e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:cd01663     8 TLYLIFGLWSGLVGTSLSLLIRLELSQPGS--QLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:cd01663    86 PRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAP 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:cd01663   166 GMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 226
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-221 7.82e-125

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 361.80  E-value: 7.82e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:cd01663     8 TLYLIFGLWSGLVGTSLSLLIRLELSQPGS--QLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:cd01663    86 PRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAP 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:cd01663   166 GMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 226
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-221 3.17e-123

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 358.41  E-value: 3.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00153   15 TLYFIFGAWSGMVGTSLSLLIRAELGQPGS--LIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00153   93 PRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSK 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00153  173 GMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLF 233
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
2-221 3.21e-73

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 230.78  E-value: 3.21e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLLGNHqvYNVLITAHAFLMIFFMVMPvMIGGFGNWLVPIMIGSPDMAFP 81
Cdd:COG0843    21 MYLVTAFVFLLIGGLLALLMRLQLAGPGLGLLSPET--YNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:COG0843    98 RLNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPG 177

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:COG0843   178 MTLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLLWQHLF 237
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 2-221 1.78e-43

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 150.80  E-value: 1.78e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLlgNHQVYNVLITAHAFLMIFFMVMPvMIGGFGNWLVPIMIGSPDMAFP 81
Cdd:pfam00115   5 LYLVTALVWFLVGGLLGLLIRLQLAFPGLNFL--SPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALvevGVGTGWTVYPPLssiqshsgAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:pfam00115  82 RLNALSFWLVVLGAVLLLASFG---GATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPG 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSMyRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNtsffdpAGGGDPILYQHLF 221
Cdd:pfam00115 151 MTL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLG------AGGGDPLLDQHLF 203
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-221 7.82e-125

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 361.80  E-value: 7.82e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:cd01663     8 TLYLIFGLWSGLVGTSLSLLIRLELSQPGS--QLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:cd01663    86 PRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAP 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:cd01663   166 GMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 226
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-221 3.17e-123

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 358.41  E-value: 3.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00153   15 TLYFIFGAWSGMVGTSLSLLIRAELGQPGS--LIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00153   93 PRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSK 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00153  173 GMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLF 233
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-221 1.21e-110

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 326.63  E-value: 1.21e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00167   17 TLYFIFGAWAGMVGTALSLLIRAELSQPGS--LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00167   95 PRMNNMSFWLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00167  175 GITQYQTPLFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPILYQHLF 235
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-221 1.02e-108

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 321.66  E-value: 1.02e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00116   17 TLYLIFGAWAGMVGTALSLLIRAELGQPGT--LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00116   95 PRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00116  175 AMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLF 235
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-221 1.78e-106

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 315.76  E-value: 1.78e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGnhLLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00223   14 TLYLIFGMWSGLVGTSLSLLIRAELGQPG--ALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00223   92 PRLNNMSFWLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSP 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00223  172 GMQLERLPLFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 232
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-221 5.12e-104

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 309.73  E-value: 5.12e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00142   15 TLYFLFGAWAGMVGTGLSLLIRAELGQPGS--LLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00142   93 PRMNNMSFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAG 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00142  173 GMKFERVPLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 233
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-221 3.17e-98

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 295.19  E-value: 3.17e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00182   19 TLYLVFGAGAGMIGTAFSMLIRLELSAPGA--MLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00182   97 PRLNNISFWLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAP 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00182  177 GVTFNRLPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILFQHLF 237
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-221 1.56e-96

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 290.57  E-value: 1.56e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00184   19 TLYLLFGAFAGMIGTAFSMLIRLELSAPGS--MLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00184   97 PRLNNISFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAP 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00184  177 GITMDRMPLFVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLF 237
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-221 2.98e-96

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 289.81  E-value: 2.98e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00037   17 TLYLIFGAWAGMVGTAMSVIIRTELAQPGS--LLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00037   95 PRMNNMSFWLIPPSFLLLLASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00037  175 GMTFDRLPLFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPILFQHLF 235
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-221 2.61e-95

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 287.55  E-value: 2.61e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00103   17 TLYLLFGAWAGMVGTALSLLIRAELGQPGT--LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00103   95 PRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00103  175 AMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLF 235
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-221 8.65e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 286.05  E-value: 8.65e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00183   17 TLYLVFGAWAGMVGTALSLLIRAELSQPGA--LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00183   95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00183  175 AISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLF 235
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-221 9.42e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 286.07  E-value: 9.42e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00077   17 TLYLVFGAWAGMVGTALSLLIRAELSQPGT--LLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00077   95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00077  175 SMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLF 235
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-221 5.36e-94

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 284.10  E-value: 5.36e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00007   14 TLYFILGVWGGLLGTSMSLLIRIELGQPGA--FLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00007   92 PRLNNMSFWLLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWK 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00007  172 GLRLERIPLFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLF 232
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-221 3.17e-90

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 274.25  E-value: 3.17e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGnhLLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00079   18 TLYFLFGLWSGMVGTSLSLIIRLELSKPG--LLLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSiQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00079   96 PRLNNLSFWLLPTSLFLILDSCFVDMGPGTSWTVYPPLST-LGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSS 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00079  175 SISLEHMSLFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLLYQHLF 235
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-221 1.31e-86

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 265.72  E-value: 1.31e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 80
Cdd:MTH00026   18 SLYLVFGALSGAIGTAFSMLIRLELSSPGS--MLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:MTH00026   96 PRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTP 175

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00026  176 GMTMSRIPLFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLF 236
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-221 1.27e-77

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 240.51  E-value: 1.27e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   1 TLYLIFGAFSGVLGGCMSMLIRMELAQPGNhlLLGNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPiMIGSPDMAF 80
Cdd:cd00919     6 LLYLIFAFVALLLGGLLALLIRLELATPGS--LFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPP-LIGARDLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  81 PRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNS 160
Cdd:cd00919    83 PRLNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAP 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 161 GQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:cd00919   163 GMTLDKMPLFVWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVLYQHLF 223
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
2-221 3.21e-73

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 230.78  E-value: 3.21e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLLGNHqvYNVLITAHAFLMIFFMVMPvMIGGFGNWLVPIMIGSPDMAFP 81
Cdd:COG0843    21 MYLVTAFVFLLIGGLLALLMRLQLAGPGLGLLSPET--YNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:COG0843    98 RLNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPG 177

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:COG0843   178 MTLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLLWQHLF 237
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 2-221 3.90e-61

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 198.57  E-value: 3.90e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLLGNHqvYNVLITAHAFLMIFFMVMPVMIGgFGNWLVPIMIGSPDMAFP 81
Cdd:cd01662    13 MYIITAFVFFLRGGVDALLMRTQLALPGNDFLSPEH--YNQIFTMHGTIMIFLFAMPLVFG-LMNYLVPLQIGARDVAFP 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:cd01662    90 RLNALSFWLFLFGGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPG 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:cd01662   170 MTLMRMPIFTWTTLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNPMLWQHLF 229
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 2-221 8.80e-58

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 190.27  E-value: 8.80e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLlgNHQVYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFP 81
Cdd:MTH00048   19 IYTLLGVWSGFVGLSLSLLIRLNFLDPYYNVI--SLDVYNFLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALveVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:MTH00048   97 RLNALSAWLLVPSIVFLLLSMC--LGAGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTN 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSmYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 221
Cdd:MTH00048  175 VF-SRTSIILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVLFQHMF 233
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 2-221 1.78e-43

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 150.80  E-value: 1.78e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRMELAQPGNHLLlgNHQVYNVLITAHAFLMIFFMVMPvMIGGFGNWLVPIMIGSPDMAFP 81
Cdd:pfam00115   5 LYLVTALVWFLVGGLLGLLIRLQLAFPGLNFL--SPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  82 RLNSISFWLLPPSLCLLLASALvevGVGTGWTVYPPLssiqshsgAAVDLAIFSLHVSGASSILGAINFISTIINMRNSG 161
Cdd:pfam00115  82 RLNALSFWLVVLGAVLLLASFG---GATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPG 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795 162 QSMyRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNtsffdpAGGGDPILYQHLF 221
Cdd:pfam00115 151 MTL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLG------AGGGDPLLDQHLF 203
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 2-220 2.02e-32

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 123.51  E-value: 2.02e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795   2 LYLIFGAFSGVLGGCMSMLIRME--LAQPGNHLLLGNHQvYNVLITAHAFLMIFFMVMPVMIGgFGNWLVPIMIGSPDMA 79
Cdd:PRK15017   60 MYIIVAIVMLLRGFADAIMMRSQqaLASAGEAGFLPPHH-YDQIFTAHGVIMIFFVAMPFVIG-LMNLVVPLQIGARDVA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026355795  80 FPRLNSISFWLLPPSLCLLLASALVEVGVGTGWTVYPPLSSIQSHSGAAVDLAIFSLHVSGASSILGAINFISTIINMRN 159
Cdd:PRK15017  138 FPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRA 217

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1026355795 160 SGQSMYRMPLFVWSIFVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHL 220
Cdd:PRK15017  218 PGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINL 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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