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Conserved domains on  [gi|1018645319|gb|AMY62901|]
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cytochrome b, partial (mitochondrion) [Malayemys khoratensis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00119   32 WNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYK 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00119  112 ETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00119  192 GLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00119  272 EWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIII 351

                         330       340
                  ....*....|....*....|....*....
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMNQ 349
Cdd:MTH00119  352 GQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00119   32 WNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYK 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00119  112 ETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00119  192 GLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00119  272 EWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIII 351

                         330       340
                  ....*....|....*....|....*....
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMNQ 349
Cdd:MTH00119  352 GQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-343 1.97e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 370.66  E-value: 1.97e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYlyK 80
Cdd:COG1290    40 YWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--K 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 E----TWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFH-FLL 155
Cdd:COG1290   118 KprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 156 PFIIAGLAIVHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNllGDPDNFMPANP 231
Cdd:COG1290   198 PALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANP 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 232 MSTPSHIKPEWYFLFAYAILRSIP--NKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIG 309
Cdd:COG1290   276 LATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILG 355

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1018645319 310 GQPAenPFTTIGQAASILYFTIPLMLMPLTGLIE 343
Cdd:COG1290   356 ANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-176 1.31e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 1.31e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSY--L 78
Cdd:cd00284    23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  79 YKETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFI 158
Cdd:cd00284   103 RELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFI 182

                         170
                  ....*....|....*...
gi 1018645319 159 IAGLAIVHLLFLHETGSN 176
Cdd:cd00284   183 IAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-174 6.84e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.61  E-value: 6.84e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYG--SYL 78
Cdd:pfam00033  14 YNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYP 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  79 YKETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFI 158
Cdd:pfam00033  94 RELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFI 173

                         170
                  ....*....|....*.
gi 1018645319 159 IAGLAIVHLLFLHETG 174
Cdd:pfam00033 174 LAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 228-309 1.91e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.91e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 228 PANPMSTPSHIKPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHT-SKQRTAMFRPLTQILFWCLTANVLilt 306
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVAL--- 141


                  ...
gi 1018645319 307 WIG 309
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.53  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00119   32 WNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYK 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00119  112 ETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00119  192 GLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00119  272 EWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIII 351

                         330       340
                  ....*....|....*....|....*....
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMNQ 349
Cdd:MTH00119  352 GQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 644.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00131   31 WNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYK 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00131  111 ETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIA 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00131  191 AATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKP 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00131  271 EWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIII 350

                         330       340
                  ....*....|....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMN 348
Cdd:MTH00131  351 GQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 635.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00100   31 WNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00100  111 ETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIT 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00100  191 ALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKP 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00100  271 EWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIII 350

                         330       340
                  ....*....|....*....|....*..
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMM 347
Cdd:MTH00100  351 GQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 630.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00074   32 WNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYK 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00074  112 ETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00074  192 GASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00074  272 EWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEI 351

                         330       340
                  ....*....|....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMN 348
Cdd:MTH00074  352 GQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-338 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 599.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00191   28 WNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNK 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00191  108 ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIA 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00191  188 ALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKP 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00191  268 EWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILL 347

                         330
                  ....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMLMPL 338
Cdd:MTH00191  348 GQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 570.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00156   21 WNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00156  101 HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIIL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00156  181 AMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00156  261 EWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILT 340


                  ....*....
gi 1018645319 321 GQAASILYF 329
Cdd:MTH00156  341 GQILTILYF 349
CYTB MTH00034
cytochrome b; Validated
 1-348 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 565.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00034   31 WNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNI 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00034  111 ETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIA 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00034  191 ALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQP 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00034  271 EWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILL 350

                         330       340
                  ....*....|....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMN 348
Cdd:MTH00034  351 GQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 557.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00145   32 WNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQ 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00145  112 HTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVIL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00145  192 GLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00145  272 EWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETI 351

                         330       340
                  ....*....|....*....|....*..
gi 1018645319 321 GQAASILYFTIpLMLMPLTGLIENKMM 347
Cdd:MTH00145  352 GQVFTVLYFLF-FLILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-346 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 526.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00016   32 WNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLM 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00016  112 ETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00016  192 ALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00016  272 EWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFL 351

                         330       340
                  ....*....|....*....|....*.
gi 1018645319 321 GQAASILYFTIpLMLMPLTGLIENKM 346
Cdd:MTH00016  352 GQIFTVFYFFY-FMINPLLMKLWDKL 376
CYTB MTH00022
cytochrome b; Validated
 1-350 2.48e-177

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 496.53  E-value: 2.48e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00022   30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKF 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00022  110 HVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILA 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00022  190 FLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQP 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00022  270 EWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILI 349

                         330       340       350
                  ....*....|....*....|....*....|
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMNQK 350
Cdd:MTH00022  350 GQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00053
cytochrome b; Provisional
 1-348 7.97e-176

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 493.07  E-value: 7.97e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00053   32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00053  112 IVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00053  192 GLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00053  272 EWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILI 351

                         330       340
                  ....*....|....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMLMPLTGLIENKMMN 348
Cdd:MTH00053  352 GQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-348 1.16e-166

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 469.79  E-value: 1.16e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00224   32 WNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00224  112 ETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIM 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00224  192 GATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKP 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00224  272 EWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGI 351

                         330       340
                  ....*....|....*....|....*...
gi 1018645319 321 GQAASILYFTIPLMlMPLTGLIENKMMN 348
Cdd:MTH00224  352 GQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-344 1.46e-127

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 370.81  E-value: 1.46e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00033   28 WNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00033  108 LTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLV 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFS--PNLLGDPDNFMPANPMSTPSHI 238
Cdd:MTH00033  188 GLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHI 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 239 KPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIGGQPA-ENPF 317
Cdd:MTH00033  268 QPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPY 347

                         330       340
                  ....*....|....*....|....*..
gi 1018645319 318 TTIGQAASILYFTIPLMLMPLTGLIEN 344
Cdd:MTH00033  348 VLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-343 1.97e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 370.66  E-value: 1.97e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYlyK 80
Cdd:COG1290    40 YWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--K 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 E----TWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFH-FLL 155
Cdd:COG1290   118 KprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 156 PFIIAGLAIVHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNllGDPDNFMPANP 231
Cdd:COG1290   198 PALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANP 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 232 MSTPSHIKPEWYFLFAYAILRSIP--NKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTWIG 309
Cdd:COG1290   276 LATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILG 355

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1018645319 310 GQPAenPFTTIGQAASILYFTIPLMLMPLTGLIE 343
Cdd:COG1290   356 ANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-336 4.38e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.08  E-value: 4.38e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00086   20 WNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLK 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00086  100 KVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDlLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKP 240
Cdd:MTH00086  180 VLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVP 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 241 EWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSkqrTAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTI 320
Cdd:MTH00086  259 EWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFL 335

                         330
                  ....*....|....*.
gi 1018645319 321 GQAASILYFTIPLMLM 336
Cdd:MTH00086  336 SQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-327 3.55e-90

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 274.17  E-value: 3.55e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYK 80
Cdd:MTH00046   22 WCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  81 ETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIA 160
Cdd:MTH00046  102 GVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVIL 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 161 GLAIVHLLFLHETGSNNPTGL-NSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIK 239
Cdd:MTH00046  182 GLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIK 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 240 PEWYFLFAYAILRSIPNKLGGVLAMLsSILMLLAMPTLHTSkqrtAMFRPLTQILFWCLTANVLILTWIGGQPAENPFTT 319
Cdd:MTH00046  262 PEWYFLAFYAMLRSINSKIGGLVLVL-SFLFFLWVPTFNGS----SVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLL 336


                  ....*...
gi 1018645319 320 IGQAASIL 327
Cdd:MTH00046  337 ISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-176 1.31e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 1.31e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSY--L 78
Cdd:cd00284    23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  79 YKETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFI 158
Cdd:cd00284   103 RELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFI 182

                         170
                  ....*....|....*...
gi 1018645319 159 IAGLAIVHLLFLHETGSN 176
Cdd:cd00284   183 IAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-174 6.84e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.61  E-value: 6.84e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   1 WNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYG--SYL 78
Cdd:pfam00033  14 YNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYP 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  79 YKETWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFI 158
Cdd:pfam00033  94 RELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFI 173

                         170
                  ....*....|....*.
gi 1018645319 159 IAGLAIVHLLFLHETG 174
Cdd:pfam00033 174 LAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 177-324 3.22e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 164.74  E-value: 3.22e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 177 NPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTLFSPNLLGDPDNFMPANPMSTPSHIKPEWYFLFAYAILRSIPN 256
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1018645319 257 KLGGVLAMLSSILMLLAMPTLHTSKQRTaMFRPLTQILFWCLTANVLILTWIGGQPAENPFTTIGQAA 324
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
58-223 4.28e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 159.71  E-value: 4.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  58 SIFFMCIYLHVGRGLYYGSYLYKE--TWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIW 135
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 136 GGFSVDNATLTRFFTFHF-LLPFIIAGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGIILTLTLLLNLTL 214
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1018645319 215 FSPNLLGDP 223
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
228-328 2.89e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 152.63  E-value: 2.89e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 228 PANPMSTPSHIKPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMFRPLTQILFWCLTANVLILTW 307
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1018645319 308 IGGQPAENPFTTIGQAASILY 328
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 3-178 4.50e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.00  E-value: 4.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   3 FGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYKE- 81
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  82 -TWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFH-FLLPFII 159
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1018645319 160 AGLAIVHLLFLHETGSNNP 178
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 3-178 6.33e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 129.84  E-value: 6.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319   3 FGSLLGTCLILQITTGIFLAMHYSPDISLAFSSITHITRDVQYGWLIRNTHANGASIFFMCIYLHVGRGLYYGSYLYKE- 81
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319  82 -TWNTGVILLLLTMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGDTLVQWIWGGFSVDNATLTRFFTFH-FLLPFII 159
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                         170
                  ....*....|....*....
gi 1018645319 160 AGLAIVHLLFLHETGSNNP 178
Cdd:CHL00070  196 AVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 228-295 2.78e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.17  E-value: 2.78e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645319 228 PANPMSTPSHIKPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHTSKQRTAMF-RPLTQILF 295
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 228-309 1.91e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.66  E-value: 1.91e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 228 PANPMSTPSHIKPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHT-SKQRTAMFRPLTQILFWCLTANVLilt 306
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVAL--- 141


                  ...
gi 1018645319 307 WIG 309
Cdd:TIGR01156 142 WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 228-318 2.77e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 2.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645319 228 PANPMSTPSHIKPEWYFLFAYAILRSIPNKLGGVLAMLSSILMLLAMPTLHT-SKQRTAMFRPLTQILFWCLTANVLILT 306
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVFLFGTLVTLWLG 145

                          90
                  ....*....|..
gi 1018645319 307 WIGGQPAENPFT 318
Cdd:COG5679   146 IGAALPIDKSLT 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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