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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Pogonatherum paniceum]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 874.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 1 M SLSLK RKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR S IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVPAT RKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 81 ITVNAPE F L E NIQ I P Q RASYIRVIMLELSRIASHLLWLGPFMAD L GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPE Q L G NIQ V P K RASYIRVIMLELSRIASHLLWLGPFMAD I GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 161 GGVAADLPYGW M DKCLDFCDYFL Q GV V EYQ Q LIT Q NPIFLERVEGVG F I S GEEA V NWGLSGPMLRASGIQWDLRK I D P YE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFL T GV A EYQ K LIT R NPIFLERVEGVG I I G GEEA I NWGLSGPMLRASGIQWDLRK V D H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 241 S Y NQ FDW K VQWQKEGDSLARYLVR V GEM R ESIKIIQQA V E K IPGGPYENLEARRF KKA K NP EWNDFEYRF LG KKPSP N FE 320
Cdd:CHL00017 241 C Y DE FDW E VQWQKEGDSLARYLVR I GEM T ESIKIIQQA L E G IPGGPYENLEARRF DRE K DS EWNDFEYRF IS KKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1016881562 321 LSKQELYVRVEAPKGELGI Y L V GDDS L FPWRWKIRPPGFINLQILPQLVK K MKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F L I GDDS V FPWRWKIRPPGFINLQILPQLVK R MKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 874.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 1 M SLSLK RKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR S IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVPAT RKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 81 ITVNAPE F L E NIQ I P Q RASYIRVIMLELSRIASHLLWLGPFMAD L GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPE Q L G NIQ V P K RASYIRVIMLELSRIASHLLWLGPFMAD I GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 161 GGVAADLPYGW M DKCLDFCDYFL Q GV V EYQ Q LIT Q NPIFLERVEGVG F I S GEEA V NWGLSGPMLRASGIQWDLRK I D P YE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFL T GV A EYQ K LIT R NPIFLERVEGVG I I G GEEA I NWGLSGPMLRASGIQWDLRK V D H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 241 S Y NQ FDW K VQWQKEGDSLARYLVR V GEM R ESIKIIQQA V E K IPGGPYENLEARRF KKA K NP EWNDFEYRF LG KKPSP N FE 320
Cdd:CHL00017 241 C Y DE FDW E VQWQKEGDSLARYLVR I GEM T ESIKIIQQA L E G IPGGPYENLEARRF DRE K DS EWNDFEYRF IS KKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1016881562 321 LSKQELYVRVEAPKGELGI Y L V GDDS L FPWRWKIRPPGFINLQILPQLVK K MKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F L I GDDS V FPWRWKIRPPGFINLQILPQLVK R MKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 598.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENR SII Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENR TYT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 87 E F L EN I QI P Q RA S YIRVI ML EL S RIASHLLWLG PFMA DLGA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I EV P E RA Q YIRVI LA EL N RIASHLLWLG TYAL DLGA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 167 LP Y G WMD K CLD F C DYF LQGVV EY QQ L I T Q N P IF LE R VE GVG FI S G E E A VNW G LS GP M LRASG IQW DLRK ID PY ES Y NQF D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VL S A E D A IAL G VT GP V LRASG VDY DLRK DE PY SG Y DEL D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 247 WK V QWQK EGD SLA RYLVR VG EMR E S IK II Q Q AVE K I P G GP YENLEARRFKKA K NPEWNDF E YRFLG - K KPSPN F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EMR Q S LR II R Q CLD K L P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016881562 326 L Y VR VE A P K GELG I YLV G D DSLF P W R W KIR P P G F I NLQ I LP QLV K KMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG F YLV S D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
6.47e-162
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 459.50
E-value: 6.47e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENR SII QY L PY VT R W DYL ATMFT E AITVN A P E F 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENR TYQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 89 L EN I QI P Q RA SY IRV IML EL S RI A SHLL WL G PFMA DLGA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I EV P R RA QV IRV MLS EL N RI S SHLL FI G THAL DLGA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 169 YG W MDKCLD F CDY F LQGVVE Y QQ L ITQ N P I FLE R VE GVG FI S GEE A VN WGL S GPMLR A SGI Q WD L RK ID PYE S Y NQF D WK 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VV S AKD A LD WGL T GPMLR G SGI D WD I RK SE PYE G Y DEY D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 249 V QWQKE GD SLA RYL V RV G EMRESIKII Q Q AV EK I P G GP Y enlearrfk KA K NP EW ------------ NDFEYR F lg K KPS 316
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L RV L EMRESIKII E Q CL EK M P P GP I --------- KA D NP KL apppkermltsm EALIHH F -- K LVT 309
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016881562 317 PN F ELSKQ E L YV RV E A PKGELG I Y LVG D DSLF P W R W KIR P P G F IN LQ I L PQLVKKMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 310 EG F RVPAG E V YV PI E S PKGELG F Y IIS D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
5.29e-147
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 417.17
E-value: 5.29e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 125 LGA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WMD K CLD F C DYF LQGVV EY QQ L I T Q N P IF LE R VE 204
Cdd:pfam00346 1 LGA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L T R N R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 205 GVG FI S G E E A VNW G LS GPMLRASG IQ WDLRK ID PY ES Y NQF D WK V QWQK EGD SLA RYLVR VG EMR E S IK II Q Q AVE K I P G 284
Cdd:pfam00346 81 GVG VL S A E D A LAL G VT GPMLRASG VP WDLRK DE PY SG Y DEL D FD V PVGT EGD CYD RYLVR ME EMR Q S LR II R Q CLD K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 285 GP YEN l EARRF --- K K AKNPE - WNDFEYR F lg K KPSPN F ELSKQ E L YV R VEAPKGELG I YLV G D DSLF P W R W KIR P P G F I 360
Cdd:pfam00346 161 GP VMA - DDPKI alp P K EEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG F YLV S D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 1016881562 361 NLQ I LP QLV K KMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 874.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 1 M SLSLK RKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR S IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVPAT RKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 81 ITVNAPE F L E NIQ I P Q RASYIRVIMLELSRIASHLLWLGPFMAD L GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPE Q L G NIQ V P K RASYIRVIMLELSRIASHLLWLGPFMAD I GAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 161 GGVAADLPYGW M DKCLDFCDYFL Q GV V EYQ Q LIT Q NPIFLERVEGVG F I S GEEA V NWGLSGPMLRASGIQWDLRK I D P YE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFL T GV A EYQ K LIT R NPIFLERVEGVG I I G GEEA I NWGLSGPMLRASGIQWDLRK V D H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 241 S Y NQ FDW K VQWQKEGDSLARYLVR V GEM R ESIKIIQQA V E K IPGGPYENLEARRF KKA K NP EWNDFEYRF LG KKPSP N FE 320
Cdd:CHL00017 241 C Y DE FDW E VQWQKEGDSLARYLVR I GEM T ESIKIIQQA L E G IPGGPYENLEARRF DRE K DS EWNDFEYRF IS KKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1016881562 321 LSKQELYVRVEAPKGELGI Y L V GDDS L FPWRWKIRPPGFINLQILPQLVK K MKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F L I GDDS V FPWRWKIRPPGFINLQILPQLVK R MKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 720.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 1 M SLSLK R KDL M IV N M GP Q HPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENR SIIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLET R TEP M VL N F GP H HPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENR TNVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 81 ITVNAPE F L E NI QI P Q RASYIRVIMLEL S RIA S HLLWLGPF M AD L GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 ITVNAPE K L A NI PV P K RASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 160 IGGVAADLPYGW MD KCLDFCDYF LQGVV EY QQ LIT Q NPIF LE R V EG V G F IS G EEA V NWGLSGPMLRASG IQ WDLRK I D P Y 239
Cdd:PRK07415 161 IGGVAADLPYGW LE KCLDFCDYF GPKID EY EK LIT N NPIF RR R I EG L G T IS R EEA I NWGLSGPMLRASG VK WDLRK V D H Y 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 240 E S Y NQ FDW K V Q W QK EGD S LARY L VR VG EMRES I KII Q QA VEK IPGGPYENLEA R R FKKA K NP EWN D F E Y RFLG KK PS P N F 319
Cdd:PRK07415 241 E C Y DD FDW D V A W ET EGD C LARY R VR IE EMRES V KII R QA CKG IPGGPYENLEA K R MAEG K KS EWN G F D Y QYVA KK VA P T F 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1016881562 320 ELSKQ ELYVR V E AP KGELGI YLV G DDSLF PWRWKIR PPG F I NLQILP Q L V K KM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGI FIQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 598.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENR SII Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENR TYT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 87 E F L EN I QI P Q RA S YIRVI ML EL S RIASHLLWLG PFMA DLGA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I EV P E RA Q YIRVI LA EL N RIASHLLWLG TYAL DLGA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 167 LP Y G WMD K CLD F C DYF LQGVV EY QQ L I T Q N P IF LE R VE GVG FI S G E E A VNW G LS GP M LRASG IQW DLRK ID PY ES Y NQF D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VL S A E D A IAL G VT GP V LRASG VDY DLRK DE PY SG Y DEL D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 247 WK V QWQK EGD SLA RYLVR VG EMR E S IK II Q Q AVE K I P G GP YENLEARRFKKA K NPEWNDF E YRFLG - K KPSPN F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EMR Q S LR II R Q CLD K L P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016881562 326 L Y VR VE A P K GELG I YLV G D DSLF P W R W KIR P P G F I NLQ I LP QLV K KMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG F YLV S D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
7-393
2.48e-176
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 496.22
E-value: 2.48e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 7 RKDLMIV N M GPQHP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N R SII Q YL PY VT R W DY LAT M FT E AITVN A P 86
Cdd:PRK06075 3 EIRNYTL N F GPQHP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y R TYL Q AI PY FD R L DY VSP M NN E HAYCL A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 87 E F L EN I QI P Q RA S YIRV IM LEL S RI A SHLLWLG PFMA DLGA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GGV AA D 166
Cdd:PRK06075 83 E K L LG I EV P E RA Q YIRV LF LEL N RI L SHLLWLG THAL DLGA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 167 LP Y G WMDKCL DF C DYF LQGVVE Y QQ L I T Q N P I FLE R VE GVG FI S G E E A VNW G LS GPMLRASG IQ WDLRK ID PYE S Y NQF D 246
Cdd:PRK06075 163 LP D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVG VV S K E R A LAL G FT GPMLRASG VA WDLRK SQ PYE V Y DEL D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 247 WK V QWQ K E GD SLA RYLVRV G EMR E S IK II Q Q AVEKI -- P G GP YENLEARRFKK A KNPEWNDF E - YRFLG K KPSPN F ELSK 323
Cdd:PRK06075 243 FD V PVG K N GD CYD RYLVRV E EMR Q S LR II E Q CLDRL rp P P GP VMVDDPKIAPP A RLEMKTSM E a LIHHF K LVTEG F RVPA 322
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 324 Q E L Y VR VE A PKGE L G I YLV G D DSLF P W R W KIR P P G F IN LQ I L PQLVKKMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 323 G E V Y AA VE S PKGE F G V YLV S D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
7-393
6.75e-166
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 469.18
E-value: 6.75e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 7 R KDL M IV N M GPQHPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRSII Q YL PY VT R W DYL AT M FTEAITVN A P 86
Cdd:PRK12322 3 R TEE M LL N V GPQHPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 87 E FLENIQI P Q RA S Y I RVI ML EL S RIASHL L W L G PFMA D L GA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGGV AA D 166
Cdd:PRK12322 83 E TMMGLEV P E RA E Y L RVI AM EL G RIASHL V W W G TYLL D I GA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGGV KW D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 167 L P Y GW MD K CLD F CD Y FLQGVVE Y QQ L I T Q N P IFL E RV E GVG FI S G EEA VNWG LSG PM LR AS G IQ WDLRK ID PY ES Y NQ FD 246
Cdd:PRK12322 163 A P D GW IE K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVG IY S A EEA ISYS LSG VN LR CT G VN WDLRK DE PY SI Y DR FD 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 247 WKVQWQKE GD SLA RY LV R VG E MRE S I KII Q QAVE KI P - G GP Y enlearrfk K AK N P ewndfey RFL g K K P spnfels K Q E 325
Cdd:PRK12322 243 FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QAVE QF P k E GP V --------- L AK V P ------- KII - K A P ------- K G E 298
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016881562 326 L YVR V E A P K GE L G I Y LVG D DSLF P W R W K I R P P G F I NLQILP Q L V K KMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 299 A YVR I E S P R GE I G C Y IAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
6.47e-162
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 459.50
E-value: 6.47e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENR SII QY L PY VT R W DYL ATMFT E AITVN A P E F 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENR TYQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 89 L EN I QI P Q RA SY IRV IML EL S RI A SHLL WL G PFMA DLGA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I EV P R RA QV IRV MLS EL N RI S SHLL FI G THAL DLGA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 169 YG W MDKCLD F CDY F LQGVVE Y QQ L ITQ N P I FLE R VE GVG FI S GEE A VN WGL S GPMLR A SGI Q WD L RK ID PYE S Y NQF D WK 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VV S AKD A LD WGL T GPMLR G SGI D WD I RK SE PYE G Y DEY D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 249 V QWQKE GD SLA RYL V RV G EMRESIKII Q Q AV EK I P G GP Y enlearrfk KA K NP EW ------------ NDFEYR F lg K KPS 316
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L RV L EMRESIKII E Q CL EK M P P GP I --------- KA D NP KL apppkermltsm EALIHH F -- K LVT 309
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016881562 317 PN F ELSKQ E L YV RV E A PKGELG I Y LVG D DSLF P W R W KIR P P G F IN LQ I L PQLVKKMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 310 EG F RVPAG E V YV PI E S PKGELG F Y IIS D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
5.29e-147
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 417.17
E-value: 5.29e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 125 LGA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WMD K CLD F C DYF LQGVV EY QQ L I T Q N P IF LE R VE 204
Cdd:pfam00346 1 LGA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L T R N R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 205 GVG FI S G E E A VNW G LS GPMLRASG IQ WDLRK ID PY ES Y NQF D WK V QWQK EGD SLA RYLVR VG EMR E S IK II Q Q AVE K I P G 284
Cdd:pfam00346 81 GVG VL S A E D A LAL G VT GPMLRASG VP WDLRK DE PY SG Y DEL D FD V PVGT EGD CYD RYLVR ME EMR Q S LR II R Q CLD K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 285 GP YEN l EARRF --- K K AKNPE - WNDFEYR F lg K KPSPN F ELSKQ E L YV R VEAPKGELG I YLV G D DSLF P W R W KIR P P G F I 360
Cdd:pfam00346 161 GP VMA - DDPKI alp P K EEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG F YLV S D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 1016881562 361 NLQ I LP QLV K KMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
3.18e-135
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 405.31
E-value: 3.18e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 8 KDLM I V N M GPQHP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRSII Q YL PY VT R W DYLA TMFTEAIT VN AP E 87
Cdd:PRK13292 402 EETL I L N L GPQHP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 88 F L EN I QI P Q RA S YIRV IML EL S RIA S HL L WLG P F M AD L GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I EV P D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 168 P Y GW MDKCLD F CDY F LQGVV EY QQ L I T Q NPIF LE R VE GVG F I SGE EAV N WG L SGP M LRA S G IQ WDLRK ID PY ES Y NQ FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVG V I TRD EAV E WG I SGP N LRA C G LA WDLRK KM PY GG Y DR FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 248 K V QWQKE GD SL ARYLVR VG EMR E S IK I IQ QA VEKI PGG PYENLEA R RFKKA K NPEWN D F E --- YR F LGKKPS P nf ELS K Q 324
Cdd:PRK13292 642 E V PTAEG GD CY ARYLVR ME EMR Q S LR I VR QA AAGM PGG RWISDDY R YVLPQ K RDTLK D I E sli HH F VNVTRG P -- APP K G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1016881562 325 E L Y VRV EAPKGE L G IYL V G D DSLFPW R WK IR P P G F INL Q I LP Q L VKKMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G YFV V S D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
3.71e-123
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 367.71
E-value: 3.71e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 9 D L M IV N M GP Q HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NR S IIQ Y L PY VT R W DYL ATMFT E AIT V N A P E F 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQ S WHS Y I PY TD R I DYL GGCMN E MPY V L A V E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 89 L EN I QI P Q R ASY IRV IML EL S RI A SHLL WL G P F MA D L GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGGVA A DLP 168
Cdd:PRK11742 270 L AG I TV P D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 169 Y GW MDKCLD F C D YFLQGVV EY QQLITQ N P I FLE R VE GV GFISGE EA VN WG LS G PM LRA S GI QW D L RK ID PY ES Y NQ FD WK 248
Cdd:PRK11742 350 R GW DRLLRE F L D WMPKRLD EY EKAALR N S I LKG R TQ GV AAYNAK EA LE WG VT G AG LRA T GI DF D V RK AR PY SG Y EN FD FE 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 249 V QWQKE GD SLA R YL V R V G EMR E S IK II Q Q AVEKI P G GP Y enlearrfk KA KN P --------- EWNDF E --- YR FL GKKPS 316
Cdd:PRK11742 430 V PVGGN GD CYD R VM V K V E EMR Q S LR II E Q CLDNM P E GP F --------- KA DH P lttpppker TLQHI E tli TH FL QVSWG 500
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016881562 317 P nf ELSKQ E LYVRV EA P KG ELGI YL VG D D S LFPW R WK IR P P G F IN LQ IL P QLVKKMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 501 P -- VMPAN E SFQMI EA T KG INSY YL TS D G S TMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
1.36e-102
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 311.91
E-value: 1.36e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 8 KDLMIVNM GP Q H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R SII Q Y L PYVT R ---------- WD Y LATM f 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y CQAV - 198
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 78 t E AIT vnapefle N I QI P Q RA S Y I RVI M LEL S RI A SHLL W LG PFMA D L G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNY 157
Cdd:COG3261 199 - E KAA -------- G I EV P P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 158 FRI GGV AA DL PYGWMDKC L DFC D YFLQG V V E YQQ L ITQN P IF L E R VE G V G FI S G E E A VNW G LS GP ML RASG IQW D L R KID 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VL S K E D A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016881562 238 PY ES Y NQF D W KV QWQK EGD SL AR Y LVR VG E MR ES IKI I Q QA V EK I P G GP yen LEARRFKKAKNP E W ndfeyrflgkkpsp 317
Cdd:COG3261 350 PY AA Y DEL D F KV VTET EGD VY AR A LVR LE E IF ES LDL I R QA L EK L P E GP --- IRVPVPGLPPDG E G -------------- 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016881562 318 nfelskqel YV RVEAP K GEL GI Y LVG D DSLFPW R W KIR P P G F I N LQI L PQLVKKMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VH Y VRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
