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Conserved domains on  [gi|1015567585|gb|AMV91962|]
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cytochrome b, partial (mitochondrion) [Xiphias gladius]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-49 1.85e-29

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 105.50  E-value: 1.85e-29
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00131  286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-49 1.85e-29

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 105.50  E-value: 1.85e-29
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00131  286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-46 1.13e-13

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 59.03  E-value: 1.13e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVD 74
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-49 1.85e-29

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 105.50  E-value: 1.85e-29
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00131  286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334
CYTB MTH00074
cytochrome b; Provisional
 1-49 1.31e-22

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 87.04  E-value: 1.31e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00074  287 NKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLI 335
CYTB MTH00119
cytochrome b; Provisional
 1-49 2.53e-22

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 86.11  E-value: 2.53e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00119  287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335
CYTB MTH00100
cytochrome b; Provisional
 1-46 6.79e-22

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 85.07  E-value: 6.79e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:MTH00100  286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVAD 331
CYTB MTH00191
cytochrome b; Provisional
 1-49 6.88e-18

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 74.18  E-value: 6.88e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00191  283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFIL 331
CYTB MTH00034
cytochrome b; Validated
 1-49 6.38e-17

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 71.28  E-value: 6.38e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00034  286 NKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFI 334
CYTB MTH00053
cytochrome b; Provisional
 1-46 1.17e-14

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 65.11  E-value: 1.17e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:MTH00053  287 NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGD 332
CYTB MTH00022
cytochrome b; Validated
 1-46 1.44e-14

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 64.72  E-value: 1.44e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:MTH00022  285 NKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVD 330
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-46 1.13e-13

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 59.03  E-value: 1.13e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVD 74
CYTB MTH00156
cytochrome b; Provisional
 1-44 1.75e-13

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 61.72  E-value: 1.75e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLV 44
Cdd:MTH00156  276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFV 319
CYTB MTH00145
cytochrome b; Provisional
 1-45 5.30e-13

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 60.30  E-value: 5.30e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVA 45
Cdd:MTH00145  287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVG 331
CYTB MTH00016
cytochrome b; Validated
 1-46 3.92e-12

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 58.15  E-value: 3.92e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVAD 46
Cdd:MTH00016  287 NKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSN 332
CYTB MTH00033
cytochrome b; Provisional
 1-49 1.09e-10

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 53.79  E-value: 1.09e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00033  285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFII 333
CYTB MTH00224
cytochrome b; Provisional
 1-49 1.39e-10

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 53.77  E-value: 1.39e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567585   1 NKLGGVLALLASILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVAI 49
Cdd:MTH00224  287 NKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAI 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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