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Conserved domains on  [gi|1015567579|gb|AMV91959|]
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cytochrome b, partial (mitochondrion) [Meleagris gallopavo]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-49 1.17e-24

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 92.66  E-value: 1.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00119  287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-49 1.17e-24

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 92.66  E-value: 1.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00119  287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-49 3.45e-15

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 62.88  E-value: 3.45e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVV 77
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-49 2.38e-07

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 44.40  E-value: 2.38e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:COG1290   302 AKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-49 1.17e-24

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 92.66  E-value: 1.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00119  287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335
CYTB MTH00100
cytochrome b; Provisional
 1-49 4.09e-23

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 88.54  E-value: 4.09e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00100  286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334
CYTB MTH00131
cytochrome b; Provisional
 1-49 1.37e-20

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 81.62  E-value: 1.37e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00131  286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLI 334
CYTB MTH00074
cytochrome b; Provisional
 1-49 2.77e-20

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 80.88  E-value: 2.77e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00074  287 NKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLI 335
CYTB MTH00191
cytochrome b; Provisional
 1-49 1.58e-17

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 73.03  E-value: 1.58e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00191  283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFIL 331
CYTB MTH00034
cytochrome b; Validated
 1-49 7.78e-17

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 71.28  E-value: 7.78e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00034  286 NKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFI 334
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-49 3.45e-15

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 62.88  E-value: 3.45e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVV 77
CYTB MTH00053
cytochrome b; Provisional
 1-49 1.47e-14

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 64.73  E-value: 1.47e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00053  287 NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFL 335
CYTB MTH00145
cytochrome b; Provisional
 1-49 1.56e-14

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 64.54  E-value: 1.56e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00145  287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFI 335
CYTB MTH00022
cytochrome b; Validated
 1-49 1.03e-13

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 62.41  E-value: 1.03e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00022  285 NKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFIL 333
CYTB MTH00156
cytochrome b; Provisional
 1-49 2.14e-13

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 61.34  E-value: 2.14e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00156  276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVIL 324
CYTB MTH00016
cytochrome b; Validated
 1-49 4.18e-13

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 60.85  E-value: 4.18e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00016  287 NKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLL 335
CYTB MTH00224
cytochrome b; Provisional
 1-49 3.93e-10

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 52.23  E-value: 3.93e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00224  287 NKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAI 335
CYTB MTH00033
cytochrome b; Provisional
 1-49 1.09e-09

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 51.09  E-value: 1.09e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:MTH00033  285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFII 333
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-49 2.38e-07

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 44.40  E-value: 2.38e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567579   1 NKLGGVLALAASVLILLLIPFLHKSKQRAMTFRPLSQTLFWLLVANLLI 49
Cdd:COG1290   302 AKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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