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Conserved domains on  [gi|1013061344|gb|AMT74249|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Casuarius casuarius]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-83 1.00e-37

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 128.40  E-value: 1.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00112  112 HFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMI 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00112  192 AII 194
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-83 1.00e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 128.40  E-value: 1.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00112  112 HFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMI 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00112  192 AII 194
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-79 1.26e-08

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 49.73  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMK----FPPMTILFMTSPSLNP---TVLTVLALISAALGGWMGLNQTQTRKILAFSSI 73
Cdd:COG1007   223 HMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302


                  ....*.
gi 1013061344  74 SHMGWM 79
Cdd:COG1007   303 AHAGYL 308
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-83 1.84e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.54  E-value: 1.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSL-ITALILSTVMKFPPMTILFMTSPSLNPT-----VLTVLALISAALGGWMGLNQTQTRKILAFSSIS 74
Cdd:pfam00361 102 HTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSIS 181


                  ....*....
gi 1013061344  75 HMGWMTVII 83
Cdd:pfam00361 182 HMGYMLIAL 190
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-77 3.64e-05

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.93  E-value: 3.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMK---FPPMTILFMTSPS----LNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSI 73
Cdd:TIGR01770 223 HMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSI 302


                  ....
gi 1013061344  74 SHMG 77
Cdd:TIGR01770 303 SHVG 306
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-83 1.00e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 128.40  E-value: 1.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00112  112 HFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMI 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00112  192 AII 194
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-83 3.38e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 106.04  E-value: 3.38e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSlNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00135  112 HFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00135  191 LVL 193
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-83 5.31e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 105.31  E-value: 5.31e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00105  112 HFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMT 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00105  192 AIL 194
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-83 1.04e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 104.62  E-value: 1.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00070  112 HFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMI 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00070  192 IIL 194
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-82 5.89e-25

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 94.61  E-value: 5.89e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00041  112 HFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWII 191


                  ..
gi 1013061344  81 VI 82
Cdd:MTH00041  192 IT 193
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-83 2.56e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 85.02  E-value: 2.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00200  112 HFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLL 191


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00200  192 SGL 194
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-83 5.63e-14

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 64.80  E-value: 5.63e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00011  108 HFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMT 187


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00011  188 MIS 190
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-79 3.61e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 62.53  E-value: 3.61e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTspsLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWM 79
Cdd:MTH00160  107 HFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWM 182
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-83 2.30e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 60.28  E-value: 2.30e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNP-TVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWM 79
Cdd:MTH00144  104 HFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWM 183


                  ....
gi 1013061344  80 TVII 83
Cdd:MTH00144  184 LVAI 187
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-83 2.23e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 51.98  E-value: 2.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILfmTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00197   99 HFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWML 176


                  ...
gi 1013061344  81 VII 83
Cdd:MTH00197  177 MSL 179
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-77 5.77e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 50.80  E-value: 5.77e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNptVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMG 77
Cdd:MTH00196  115 HMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMG 189
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-77 1.22e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 49.63  E-value: 1.22e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSLNptVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMG 77
Cdd:MTH00199  210 HMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMG 284
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-79 1.26e-08

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 49.73  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMK----FPPMTILFMTSPSLNP---TVLTVLALISAALGGWMGLNQTQTRKILAFSSI 73
Cdd:COG1007   223 HMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302


                  ....*.
gi 1013061344  74 SHMGWM 79
Cdd:COG1007   303 AHAGYL 308
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-83 1.84e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 46.54  E-value: 1.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSL-ITALILSTVMKFPPMTILFMTSPSLNPT-----VLTVLALISAALGGWMGLNQTQTRKILAFSSIS 74
Cdd:pfam00361 102 HTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSIS 181


                  ....*....
gi 1013061344  75 HMGWMTVII 83
Cdd:pfam00361 182 HMGYMLIAL 190
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-79 2.50e-07

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 45.97  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMK----FPPMTILFMTSPSLNPT---VLTVLALISAALGGWMGLNQTQTRKILAFSSI 73
Cdd:PRK05777  224 HMWTPDVYEGAPTPVTAFLATAPKiaafAVLLRLLVVAFGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSI 303


                  ....*.
gi 1013061344  74 SHMGWM 79
Cdd:PRK05777  304 AHAGYL 309
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-81 6.31e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 44.85  E-value: 6.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFppMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMT 80
Cdd:MTH00198  319 HMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396


                  .
gi 1013061344  81 V 81
Cdd:MTH00198  397 I 397
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-79 2.19e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.78  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSP--SLNPTVLTVLAL---ISAALGGWMGLNQTQTRKILAFSSISH 75
Cdd:PRK07376  247 HVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQ 326


                  ....
gi 1013061344  76 MGWM 79
Cdd:PRK07376  327 LGYM 330
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 28-81 2.22e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.52  E-value: 2.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1013061344  28 MTILFMTSPSLNpTVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMTV 81
Cdd:COG1009   264 LSPLFALSPVWL-TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-81 3.48e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 39.99  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQG-----------TSLITALILSTVMkfppMTILFMTSPSLNPTVLTVLALISAALGGWMGLNQTQTRKILA 69
Cdd:CHL00049  234 HQWTPDVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                          90
                  ....*....|..
gi 1013061344  70 FSSISHMGWMTV 81
Cdd:CHL00049  310 YSSIGQIGYVII 321
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 42-81 3.50e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 40.06  E-value: 3.50e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1013061344  42 VLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMTV 81
Cdd:COG1008   277 LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-77 3.64e-05

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.93  E-value: 3.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMK---FPPMTILFMTSPS----LNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSI 73
Cdd:TIGR01770 223 HMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSI 302


                  ....
gi 1013061344  74 SHMG 77
Cdd:TIGR01770 303 SHVG 306
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-83 3.65e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 3.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSP-----SLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISH 75
Cdd:MTH00032  245 HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekaPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQ 324


                  ....*...
gi 1013061344  76 MGWMTVII 83
Cdd:MTH00032  325 LGYMVLII 332
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 32-83 3.73e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.91  E-value: 3.73e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1013061344  32 FMTSPSLNPTVLtVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMTVII 83
Cdd:PRK12644  260 FADVPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-82 1.77e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSP--SLNPTVLTVLALI---SAALGGWMGLNQTQTRKILAFSSISH 75
Cdd:MTH00020  230 HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIIVTIVgslTVFFAATVGLVQNDLKKVIAYSTCSQ 309


                  ....*..
gi 1013061344  76 MGWMTVI 82
Cdd:MTH00020  310 LGYMVVA 316
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 41-81 2.35e-04

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 37.43  E-value: 2.35e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1013061344  41 TVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMTV 81
Cdd:COG0651   273 TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL 313
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 41-83 4.32e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 36.72  E-value: 4.32e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1013061344  41 TVLTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWMTVII 83
Cdd:PRK05846  278 PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGI 320
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 37-81 3.09e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 34.36  E-value: 3.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1013061344  37 SLNPTVLTVLALISAA---LGGWMGLNQTQTRKILAFSSISHMGWMTV 81
Cdd:PRK06590  275 ELSPEALLFVAIVGAVtalFAAFIGLVQTDIKRVLAYSTMSQLGYMFL 322
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-82 4.82e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 33.83  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSP-----SLNPTVLTVLALISAALGGWMGLNQTQTRKILAFSSISH 75
Cdd:MTH00210  231 HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQ 310


                  ....*..
gi 1013061344  76 MGWMTVI 82
Cdd:MTH00210  311 LGYMVMV 317
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
43-79 9.22e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 33.13  E-value: 9.22e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1013061344  43 LTVLALISAALGGWMGLNQTQTRKILAFSSISHMGWM 79
Cdd:PRK06473  274 LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12650 PRK12650
DUF4040 family protein;
1-83 9.62e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 33.09  E-value: 9.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013061344   1 HFWFPEVLQGTSLITALILSTVMKFPPMTILFMTSPSL--NPT---VLTVLALISAALGGWMGLNQTQTRKILAFSSISH 75
Cdd:PRK12650  228 HFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQ 307


                  ....*...
gi 1013061344  76 MGWMTVII 83
Cdd:PRK12650  308 LGWIVATI 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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