|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-1234 |
2.04e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 393 LSDAENEIMR-LSSLNQDNSLAEDNLKLKMRIEvlEKEKSLLSQEKEELQMSLLKLN---NEYEVIKSTATRDIS-LDSE 467
Cdd:TIGR02168 191 LEDILNELERqLKSLERQAEKAERYKELKAELR--ELELALLVLRLEELREELEELQeelKEAEEELEELTAELQeLEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 468 LHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMilikDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLED 547
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----ANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 548 DKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELM 627
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 628 QSLNQDSNSNFKDT---------LLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKL---VLACEDVRHQLE-- 693
Cdd:TIGR02168 425 ELLKKLEEAELKELqaeleeleeELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERLQENLEgf 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 694 -----ECLAGNNQLSLEKNTIVETLKMEKG---EIEAELCWAKKRLL-EEANKYEKTIEELSNARNLNTSALQLEHEHLI 764
Cdd:TIGR02168 505 segvkALLKNQSGLSGILGVLSELISVDEGyeaAIEAALGGRLQAVVvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 765 KLnQKKDMEIAELKKNIEQMDTDHKETKDVLS-------------SSLEEQKQLTQLINKKEIFI----EKLKERSSKLQ 827
Cdd:TIGR02168 585 EI-QGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLDNALELAKKLRPGYRIVtldgDLVRPGGVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 828 EELDKYSQAL-RKNEI--LRQTIEEKDRSLGSMKEENNhlqeelerlreeqsrtapvadpKTLDSVTELASEVSQLNTIK 904
Cdd:TIGR02168 664 GSAKTNSSILeRRREIeeLEEKIEELEEKIAELEKALA----------------------ELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 905 EHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDE---EIKSLQKTIEQIKTQLHEE 981
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaeaEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 982 RQDIqTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLvkgIKERELEIKLLNEKNISLTKQIDQLskdevgkltqiiq 1061
Cdd:TIGR02168 802 REAL-DELRAELTLLNEEAANLRERLESLERRIAATERR---LEDLEEQIEELSEDIESLAAEIEEL------------- 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1062 qkDLEIQALHARIssTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENKK 1141
Cdd:TIGR02168 865 --EELIEELESEL--EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1142 LSTRFESSGQDMFRETIQNLSriirekdiEIDALSQKCQTLLAVLQTSStgNEAGGVNSN---QFEELLQERDKLKQQVK 1218
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKI--KELGPVNLAaieEYEELKERYDFLTAQKE 1010
|
890
....*....|....*.
gi 1012519614 1219 KMEEWKQQVMTTVQNM 1234
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-1067 |
9.28e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 9.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 243 QQKLTEISRRHREELS---------DYEERIEELENLLQQggsgvIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDK 313
Cdd:TIGR02168 208 QAEKAERYKELKAELRelelallvlRLEELREELEELQEE-----LKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 314 IKDINKKLSSaendrdiLRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFR----- 388
Cdd:TIGR02168 283 IEELQKELYA-------LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKeeles 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 389 LQQALSDAENEIMRLSSLNQD-----NSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEvikstATRDIS 463
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEEleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE-----ELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 464 LDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISkLKQDLNDEKKRVH 543
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFSEGVK 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 544 QLEDDKMDITKELDVQKEKL---IQSEVALNDLhltkqkLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRqneeELS 620
Cdd:TIGR02168 510 ALLKNQSGLSGILGVLSELIsvdEGYEAAIEAA------LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFL----PLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 621 RIRNELMQSLNQDSNSNFKDTL-----LKEREAEVRNLKQNL-------SELEQLNENLKKVAFDVKM------------ 676
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLgvakdLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIvtldgdlvrpgg 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 677 -------ENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEeankyektIEELSNAR 749
Cdd:TIGR02168 660 vitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE--------LSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 750 NLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEE 829
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 830 L----DKYSQALRKNEILRQTIEEKDRSLGSMKEENNhlqeelerlreeqsrtapvadpKTLDSVTELASEVSQLNTIKE 905
Cdd:TIGR02168 812 LtllnEEAANLRERLESLERRIAATERRLEDLEEQIE----------------------ELSEDIESLAAEIEELEELIE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 906 HLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQheqmnathtqlFLEKDEEIKSLQKTIEQIKTQLHEERQDI 985
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESK-----------RSELRRELEELREKLAQLELRLEGLEVRI 938
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 986 QTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKER-----------ELEIKLLNEKNISLTKQIDQLSKdEVG 1054
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKikelgpvnlaaIEEYEELKERYDFLTAQKEDLTE-AKE 1017
|
890
....*....|...
gi 1012519614 1055 KLTQIIQQKDLEI 1067
Cdd:TIGR02168 1018 TLEEAIEEIDREA 1030
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
297-1146 |
2.27e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 82.71 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 297 QIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDTMTEKERI 376
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 377 LAQSasveevFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKlKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKS 456
Cdd:pfam02463 249 EQEE------IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ-EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 457 TATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLN 536
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 537 DEKKRV---HQLEDDKMDITKELDVQKEKL---IQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKE 610
Cdd:pfam02463 402 EEEKEAqllLELARQLEDLLKEEKKEELEIleeEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 611 HIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRH 690
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 691 QLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQKK 770
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 771 DMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQaLRKNEILRQTIEEK 850
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ-REKEELKKLKLEAE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 851 DRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQ 930
Cdd:pfam02463 721 ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 931 -SLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEK 1009
Cdd:pfam02463 801 eELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1010 HDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQ-----QKDLEIQALHARISSTSHTQDVV 1084
Cdd:pfam02463 881 EQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKyeeepEELLLEEADEKEKEENNKEEEEE 960
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012519614 1085 YLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENKKLSTRF 1146
Cdd:pfam02463 961 RNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEF 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-985 |
1.92e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 225 SQEIDDHQHEMSVLQ-NAHQQKLteisRRHREELSDYEERIEELENLLQQGGSGVIETDLsKIYEMQKTIQVLQ------ 297
Cdd:TIGR02168 219 KAELRELELALLVLRlEELREEL----EELQEELKEAEEELEELTAELQELEEKLEELRL-EVSELEEEIEELQkelyal 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 298 ---IEKVESTK-----KMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDT 369
Cdd:TIGR02168 294 aneISRLEQQKqilreRLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 370 MTEKERILAQSASveEVFRLQQALSDAENEIMRLSSlnQDNSLAEDNLKLKMRIEVLEKEksLLSQEKEELQMSLLKLNn 449
Cdd:TIGR02168 374 LEELEEQLETLRS--KVAQLELQIASLNNEIERLEA--RLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELE- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 450 eyEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKdQLSKQQNEGDSIIS 529
Cdd:TIGR02168 447 --EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 530 KLKQDLNDEKK-----------RVHQLEDDKMDITK-----------------ELDVQKEKLIQSE------------VA 569
Cdd:TIGR02168 524 VLSELISVDEGyeaaieaalggRLQAVVVENLNAAKkaiaflkqnelgrvtflPLDSIKGTEIQGNdreilkniegflGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 570 LNDLHLTKQKLEDKVENLVDQLN--KSQESNVSIQKENLELKEHIRQNEEELSR-------IRNELMQSLNQDSNSNFKD 640
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLLGGVLvvDDLDNALELAKKLRPGYRIVTLDGDLVRPggvitggSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 641 TLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEI 720
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 721 E------AELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQkkdmEIAELKKNIEQMDTDHKETKDV 794
Cdd:TIGR02168 764 EeleerlEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE----EAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 795 LSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLgsMKEENNHLQEELERLREE 874
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRREL 917
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 875 QSRTAPVAdpktlDSVTELASEVSQLNTIKEHL-------EEEIKHHQKIIEDQNQSKMQLLQSLQEQKKE--------M 939
Cdd:TIGR02168 918 EELREKLA-----QLELRLEGLEVRIDNLQERLseeysltLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaI 992
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 940 DEFRYQHEQMNathtqlFLEK-----DEEIKSLQKTIEQIKTQLHEERQDI 985
Cdd:TIGR02168 993 EEYEELKERYD------FLTAqkedlTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
422-978 |
5.28e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 5.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 422 RIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRdisLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDR 501
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEE---LRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 502 QNQEATKHmiliKDQLSKQQNEgdsiiskLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLE 581
Cdd:COG1196 310 RRRELEER----LEELEEELAE-------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 582 DKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDsnsnfkDTLLKEREAEVRNLKQNLSELE 661
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL------AELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 662 QLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKT 741
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 742 IEELSNArnLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKE 821
Cdd:COG1196 533 EAAYEAA--LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 822 RSSK-------LQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQS--RTAPVADPKTLDSVTE 892
Cdd:COG1196 611 ADARyyvlgdtLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 893 LASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIE 972
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
....*.
gi 1012519614 973 QIKTQL 978
Cdd:COG1196 771 RLEREI 776
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
481-1032 |
6.74e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.90 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 481 ELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSI---ISKLKQDLNDEKKRVHQLEDDKMDITKELD 557
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 558 VQKEKLIQSEVALNDLHLTKQK---LEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDS 634
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 635 NSNFK----DTLLKEREAEVRNLKQNLSELEQLNEN--LKKVAFDVKMENEKLVlacedvrhQLEECLAGNNQLSLEKNT 708
Cdd:TIGR04523 271 EKQKEleqnNKKIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQEKKLE--------EIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 709 IVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEE----LSNARNLNT--SALQLEHEHLIKLNQKKDMEIAELKKNIE 782
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsyKQEIKNLESqiNDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 783 QMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKN----EILRQTIEEKDRSLGSMK 858
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIkqnlEQKQKELKSKEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 859 EENNHLQEELERLREEQSrtapvadpKTLDSVTELASEVSQLNTIKEHLEEEIKHhqkiiEDQNQSKMQLLQSLQEQKKE 938
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKIS--------SLKEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 939 MDEFRYQHEQMNATHTqlflEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIfQETKVQSLNIENGSEKHDLSKAETE 1018
Cdd:TIGR04523 570 IEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL-EKAKKENEKLSSIIKNIKSKKNKLK 644
|
570
....*....|....
gi 1012519614 1019 RLVKGIKERELEIK 1032
Cdd:TIGR04523 645 QEVKQIKETIKEIR 658
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
411-724 |
1.04e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 411 SLAEDNLKLKMRIEVLEKEKSLLSQEKEELQmsllKLNNEYEVIKSTATRDISldsELHDLRLNLEAKEQELNQSISEKE 490
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIE----NRLDELSQELSDASRKIG---EIEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 491 TLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEkkRVHQLEDDKMDITKELDVQKEKLIQSEVAL 570
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 571 NDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQdsnsnfkdtlLKEREAEV 650
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR----------LGDLKKER 891
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1012519614 651 RNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQL--SLEKNTIVETLKMEKGEIEAEL 724
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeIPEEELSLEDVQAELQRVEEEI 967
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-852 |
1.85e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 212 KLQNIIKELKQN-RSQEIDDHQHEMSVLQNAHQQKLTEIsRRHREELSDYEERIEELEnllqqggsgvietdlSKIYEMQ 290
Cdd:COG1196 217 ELKEELKELEAElLLLKLRELEAELEELEAELEELEAEL-EELEAELAELEAELEELR---------------LELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 291 KTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDTM 370
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 371 TEKERILAQSASVEEvfRLQQALSDAENEIMRLssLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNE 450
Cdd:COG1196 361 AEAEEALLEAEAELA--EAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 451 YEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELdrQNQEATKHMILIKDQLSKQQNEGDSIISK 530
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE--LAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 531 LKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENL----VDQLNKSQESNVSIQKENL 606
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 607 ELKEHIRQNEEELSRIRNELMQslnqdsnsNFKDTLLkEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACE 686
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYY--------VLGDTLL-GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 687 DVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELcwakKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKL 766
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEE----EEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 767 NQKKDMEIAELKKNIEQMDtdhketkdvlssSLEEQKQLTQLINKKeifIEKL--------------KERSSKLQEELDK 832
Cdd:COG1196 742 LEEEELLEEEALEELPEPP------------DLEELERELERLERE---IEALgpvnllaieeyeelEERYDFLSEQRED 806
|
650 660
....*....|....*....|
gi 1012519614 833 YSQALRKneiLRQTIEEKDR 852
Cdd:COG1196 807 LEEARET---LEEAIEEIDR 823
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
907-1751 |
7.70e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 7.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 907 LEEEIKHHQKII-----EDQNQSKMQLLQSLQEQKKEMDEFRyqhEQMNATHTQL------FLEKDEEIKSLQKTIEQIK 975
Cdd:TIGR02168 218 LKAELRELELALlvlrlEELREELEELQEELKEAEEELEELT---AELQELEEKLeelrleVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 976 TQLHEERQDIQ-TDNSDIFQETKVQSLN--IENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDE 1052
Cdd:TIGR02168 295 NEISRLEQQKQiLRERLANLERQLEELEaqLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1053 VGKLTQIIQQKDLEIQALHARissTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMdiVAAKEAAL 1132
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQI---ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1133 IKLQDENKKLSTRFESSgqdmfRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTSSTGNEAGGVNSNQFEELLQERDK 1212
Cdd:TIGR02168 450 EELQEELERLEEALEEL-----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1213 LKQQVKKMEEWKQQVmttvqnmqheSAQLQEELhqlqaQVLVDSDNNSKLQvdytgLIQSYEQNETKLKNF-------GQ 1285
Cdd:TIGR02168 525 LSELISVDEGYEAAI----------EAALGGRL-----QAVVVENLNAAKK-----AIAFLKQNELGRVTFlpldsikGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1286 ELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSAslLTPQSAECLRASksevlsesselLQQELEELRKSLQEKdATIRTL 1365
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA--LSYLLGGVLVVD-----------DLDNALELAKKLRPG-YRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1366 QENNHRLSDSIAATSELERKEHEQTDSEIKQLKEKQDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTN 1445
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1446 LKERILILEMDIGKLkgenekivetyrgkETEYQALQETNMKfsmmLREKEFECHSMKEKALAFEQLLKEKEQGKTGELN 1525
Cdd:TIGR02168 731 LRKDLARLEAEVEQL--------------EERIAQLSKELTE----LEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1526 QLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRnhllESEDSYTREALAAEDRE 1605
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS----EDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1606 AKLRKKVTVLEEKLvsssNAMENASHQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQE 1685
Cdd:TIGR02168 869 EELESELEALLNER----ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1686 EKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEAN----AALDSASRLTEQLDVKEEQIEELKR 1751
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
475-1252 |
9.12e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 9.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 475 LEAKEQELNQSISEKETliaEIEELDRQnqeatkhmiliKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITK 554
Cdd:TIGR02168 237 LREELEELQEELKEAEE---ELEELTAE-----------LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 555 ELDVQKEKL----IQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIR--NELMQ 628
Cdd:TIGR02168 303 QKQILRERLanleRQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEelEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 629 SLNQDSNsnfkdtLLKEREAEVRN-LKQNLSELEQLNENLKkvafdvKMENEKLVLACEDVRHQLEECLAGNNqlslEKN 707
Cdd:TIGR02168 383 TLRSKVA------QLELQIASLNNeIERLEARLERLEDRRE------RLQQEIEELLKKLEEAELKELQAELE----ELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 708 TIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHliklnQKKDMEIAELKKNIEQMDTD 787
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-----EGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 788 HketkDVLSSSLEEQKQLTQLINKkeifieKLKERSSKL----QEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNH 863
Cdd:TIGR02168 522 L----GVLSELISVDEGYEAAIEA------ALGGRLQAVvvenLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 864 LQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLE--EEIKHHQKIIEDQ----------NQSKMQLLQS 931
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALElaKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 932 LQEQKKEMDEFRYQHEQMnathTQLFLEKDEEIKSLQKTIEQIKTQLHEER---QDIQTDNSDIFQETKVQSLNIENGSE 1008
Cdd:TIGR02168 672 ILERRREIEELEEKIEEL----EEKIAELEKALAELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1009 KHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSTS-HTQDVVYLQ 1087
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-EAQIEQLKEELKALREALDELRAELTLLNeEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1088 QQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMdivAAKEAALIKLQDENKKLSTRFESSGQDM--FRETIQNLSRII 1165
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEI---EELEELIEELESELEALLNERASLEEALalLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1166 REKDIEIDALSQKCQTLlavlqtsstgNEAGGVNSNQFEELLQERDKLKQQVkkMEEWK---QQVMTTVQNMQHESAQLQ 1242
Cdd:TIGR02168 904 RELESKRSELRRELEEL----------REKLAQLELRLEGLEVRIDNLQERL--SEEYSltlEEAEALENKIEDDEEEAR 971
|
810
....*....|
gi 1012519614 1243 EELHQLQAQV 1252
Cdd:TIGR02168 972 RRLKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-626 |
1.06e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 306 KMEQLEDKIKDINKKLSSAENDRDILRREQEQLnvEKRQIMEEcenlKLECSKLQPSAVKQSDTMTEKERILAQSASVEE 385
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKA--ERYQALLK----EKREYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 386 VF---------------RLQQALSDAENEIMRLSSlNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNE 450
Cdd:TIGR02169 252 ELeklteeiselekrleEIEQLLEELNKKIKDLGE-EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 451 YEVIKSTATrdiSLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISK 530
Cdd:TIGR02169 331 IDKLLAEIE---ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 531 LKQDLNDEKKRVHQLEDDKMDITkeldVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKsqesnvsIQKENLELKE 610
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIA----GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK-------YEQELYDLKE 476
|
330
....*....|....*.
gi 1012519614 611 HIRQNEEELSRIRNEL 626
Cdd:TIGR02169 477 EYDRVEKELSKLQREL 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
68-852 |
1.24e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 68 ERLKKLCTDLEEKHEASeiqIKQQSTSYRNQLQQKEVEISHLKARQIALQDQLLKLQSAaqsvpsgagvpattasssfay 147
Cdd:TIGR02168 213 ERYKELKAELRELELAL---LVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--------------------- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 148 gISHHPSAFHDDDMDFGDIissQQEINRLSNEVSRLESEVGHWRHIAQTSKAQGTDNSDQSEICKLQNIIKELKQNRSQE 227
Cdd:TIGR02168 269 -LEELRLEVSELEEEIEEL---QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 228 iddhqhEMSVLQNAHQQKLTEISRRhREELSDYEERIEELENLLQQGGSGVIETdLSKIYEMQKTIQVLQIEKVESTKKM 307
Cdd:TIGR02168 345 ------KLEELKEELESLEAELEEL-EAELEELESRLEELEEQLETLRSKVAQL-ELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 308 EQLEDKIKDINKKLSsaENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDTMTEKERILAQSAS-VEEV 386
Cdd:TIGR02168 417 ERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQArLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 387 FRLQQALSDAENEIMRLssLNQDNSLAEDNLKLKMRIEVLEK-EKSLLSQEKEELQMSLLKLNNEYEVIKSTATR----- 460
Cdd:TIGR02168 495 ERLQENLEGFSEGVKAL--LKNQSGLSGILGVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQnelgr 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 461 ------DISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEE------------------LDRQNQEATKHMILIKD- 515
Cdd:TIGR02168 573 vtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnaLELAKKLRPGYRIVTLDg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 516 -------------------QLSKQQN--EGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLH 574
Cdd:TIGR02168 653 dlvrpggvitggsaktnssILERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 575 LTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRI---RNELMQSLNQDSNSNFKDTL-LKEREAEV 650
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREaLDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 651 RNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKmEKGEIEAELCWAKKR 730
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-ALLNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 731 LLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQKKD---MEIAELKKNIEQ-----MDTDHKETKDVLSSSLEEQ 802
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEgleVRIDNLQERLSEeysltLEEAEALENKIEDDEEEAR 971
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 803 KQLTQLINKKEIF----------IEKLKERSSKLQEELDKYSQALRKneiLRQTIEEKDR 852
Cdd:TIGR02168 972 RRLKRLENKIKELgpvnlaaieeYEELKERYDFLTAQKEDLTEAKET---LEEAIEEIDR 1028
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
195-645 |
2.98e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 195 QTSKAQGTDNSDQSEICKLQNIIKELKQNRSQEIDDHQHEMSVLQNaHQQKLTEISRRHREELSDYEERIEELENLLQQG 274
Cdd:TIGR04523 226 QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE-KQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 275 GSGVIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKL 354
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 355 ECSKLQPSAVKQSDTMTEKERILAQSAsvEEVFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKmrIEVLEKEKSLLS 434
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKD--EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ--DSVKELIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 435 QEKEELQMSLLKLNNEYEVIKStatrdisldselhdlrlNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIK 514
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQ-----------------NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 515 ---DQLSKQQNEGDSIISKLKQDLNDEK----------------KRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHL 575
Cdd:TIGR04523 524 ekiEKLESEKKEKESKISDLEDELNKDDfelkkenlekeideknKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 576 TKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKE 645
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKT 673
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
212-829 |
1.95e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 212 KLQNIIKELKQNRSQEIDDHQHEMSV--LQNAHQQKLTEISRRHREELSDYEERIEELENLlqqggsgviETDLSKIYEM 289
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIeeLIKEKEKELEEVLREINEISSELPELREELEKL---------EKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 290 QKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSsaendrdilrreqeqlnvEKRQIMEECENLKLECSKLQPSAVKQSDT 369
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIE------------------ELKKEIEELEEKVKELKELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 370 MTEKERILAQSASVEEvfRLQQALSDAENEIMRLSSLNQDNSLAEdnlKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNN 449
Cdd:PRK03918 299 SEFYEEYLDELREIEK--RLSRLEEEINGIEERIKELEEKEERLE---ELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 450 EYEVIKSTATRDIS-LDSELHDL---RLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGd 525
Cdd:PRK03918 374 LERLKKRLTGLTPEkLEKELEELekaKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKE- 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 526 sIISKLKQDLNDEKKRVHQLEDDKMDITKELdVQKEKLIQSEVALNDLHltkqKLEDKVENLVDQLNKSQESNVSIQKEN 605
Cdd:PRK03918 453 -LLEEYTAELKRIEKELKEIEEKERKLRKEL-RELEKVLKKESELIKLK----ELAEQLKELEEKLKKYNLEELEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 606 LE-LKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSEL-----EQLNENLKKVAfdvKMENE 679
Cdd:PRK03918 527 YEkLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesvEELEERLKELE---PFYNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 680 KLVLacEDVRHQLEECLagnNQLSLEKNTIVETLKmEKGEIEAELCWAKKRLLEEANKYEKtiEELSNARNLNTSalqLE 759
Cdd:PRK03918 604 YLEL--KDAEKELEREE---KELKKLEEELDKAFE-ELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLE---LS 672
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012519614 760 HEHLIKLNQKKDME--IAELKKNIEQMdtdhKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEE 829
Cdd:PRK03918 673 RELAGLRAELEELEkrREEIKKTLEKL----KEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
241-980 |
2.43e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 241 AHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKK 320
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 321 LSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAvkQSDTMTEKERILAQSASVEEVFRLQQALSDAENEI 400
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL--EEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 401 MRLSSLNQdnSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEyevIKSTATRDISLDSELHDLRLNLEAKEQ 480
Cdd:TIGR02169 409 DRLQEELQ--RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK---LEQLAADLSKYEQELYDLKEEYDRVEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 481 ELNQSISEKETLIAEIEELDRQNQEATKHMILIKD----------QLSKQQNE---------GDSIISKLKQDLNDEKKR 541
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaQLGSVGERyataievaaGNRLNNVVVEDDAVAKEA 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 542 VHQLEDDK------MDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLV--------------------------- 588
Cdd:TIGR02169 564 IELLKRRKagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgkyrmvt 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 589 ---DQLNKS---------QESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLN-QDSNSNFKDTLLKEREAEVRNLKQ 655
Cdd:TIGR02169 644 legELFEKSgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRrIENRLDELSQELSDASRKIGEIEK 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 656 NLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEA 735
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 736 NKYEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEqmdtDHKETKDVLSSSLEEqkqLTQLINKKEIF 815
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK----SIEKEIENLNGKKEE---LEEELEELEAA 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 816 IEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKdrslgsMKEENNHLQEELERLREEQSRTAPVADPKTLDsvtelaS 895
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQ------IEKKRKRLSELKAKLEALEEELSEIEDPKGED------E 944
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 896 EVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMnathtqlflekDEEIKSLQKTIEQIK 975
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL-----------EEERKAILERIEEYE 1013
|
....*
gi 1012519614 976 TQLHE 980
Cdd:TIGR02169 1014 KKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
372-974 |
2.50e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 372 EKERILAQSASVEEVFRLQQALSDAENEImrlsslnqdNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEY 451
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAEL---------EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 452 EVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISE----KETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEgdsi 527
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAEleeeLEELEEELEELEEELEEAEEELEEAEAELAEAEEA---- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 528 ISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLE 607
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 608 LKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLNE-NLKKVAFDVKMENEKLVLACE 686
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 687 DVRHQLEECL---AGNNQLSLEKNTIVETLKMEKGEIEaelcWAKKRLLEEANKYEKT-IEELSNARNLNTSALQLEHEH 762
Cdd:COG1196 527 AVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIE----YLKAAKAGRATFLPLDkIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 763 LIKLNQKKDMEIAELKKNI---EQMDTDHKETKDVLSSSLEEQKQLTQLinKKEIFIEKLKERSSKLQEELDKYSQALRK 839
Cdd:COG1196 603 LVASDLREADARYYVLGDTllgRTLVAARLEAALRRAVTLAGRLREVTL--EGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 840 NEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIE 919
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012519614 920 DQNQSKmQLLQSLQEQKKEM--------DEFRYQHEQMNATHTQLfleKD--EEIKSLQKTIEQI 974
Cdd:COG1196 761 DLEELE-RELERLEREIEALgpvnllaiEEYEELEERYDFLSEQR---EDleEARETLEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-1435 |
3.33e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 610 EHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLS--ELEQLNENLKKVAFDVKMENEKlvlaCED 687
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLvlRLEELREELEELQEELKEAEEE----LEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 688 VRHQLEECLAGNNQLSLEKNTivetLKMEKGEIEAELcwakKRLLEEANKYEKTIEELSNAR-NLNTSALQLEhEHLIKL 766
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSE----LEEEIEELQKEL----YALANEISRLEQQKQILRERLaNLERQLEELE-AQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 767 NQKKDM---EIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALrknEIL 843
Cdd:TIGR02168 329 ESKLDElaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI---ERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 844 RQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDsvtELASEVSQLNTIKEHLEEEIKHHQKIIeDQNQ 923
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQAL-DAAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 924 SKMQLLQSLQEQKKEMDEfryQHEQMNATHTQLFLEKDEEIKSLQKTIEQIKTQ----------LHEERQDIQTDNSDIF 993
Cdd:TIGR02168 482 RELAQLQARLDSLERLQE---NLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieaaLGGRLQAVVVENLNAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 994 QETkVQSLniengsEKHDLSKAeTERLVKGIKERELEIKLLNEKN---------ISLTKQIDQLSKDEVGKLTQIIQQKD 1064
Cdd:TIGR02168 559 KKA-IAFL------KQNELGRV-TFLPLDSIKGTEIQGNDREILKniegflgvaKDLVKFDPKLRKALSYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1065 LEiQALHARiSSTSHTQDVVYLQQQL----QAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENK 1140
Cdd:TIGR02168 631 LD-NALELA-KKLRPGYRIVTLDGDLvrpgGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1141 KLSTRFESsgqdmFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTsstgneaggvNSNQFEELLQERDKLKQQVKKM 1220
Cdd:TIGR02168 709 ELEEELEQ-----LRKELEELSRQISALRKDLARLEAEVEQLEERIAQ----------LSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1221 EEWKQQVMTtvqnmqhESAQLQEELHQLQAQVLVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNT 1300
Cdd:TIGR02168 774 EEELAEAEA-------EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1301 KDLLLGKLDIISPQLSSASLLTPQSAECL------RASKSEVLSESSELLQQELEELRKSLQEKDATIRTLQENNHRLSD 1374
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELeallneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 1375 SIAATSELERKEHEQtdseIKQLKEKQDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNE 1435
Cdd:TIGR02168 927 LELRLEGLEVRIDNL----QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-1001 |
7.05e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 7.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 254 REELSDYE--ERIEELENLLQQggsgvIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDI- 330
Cdd:TIGR02169 217 LKEKREYEgyELLKEKEALERQ-----KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLr 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 331 LRREQEQLNVEKRQIMEECENLKLEcskLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALSDAENEIMRlsslnqdn 410
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERE---LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 411 SLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDIS----LDSELHDLRLNLEAKEQELNQSI 486
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEelqrLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 487 SEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSI---ISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKL 563
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVekeLSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 564 IQSEVALNDLHLTKQKLEDKVEN-LVDQLNKSQESNVSIQKENLE-LKEH------------IRQNEEELSRIRNE---- 625
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYATAIEVaAGNRLNNVVVEDDAVAKEAIElLKRRkagratflplnkMRDERRDLSILSEDgvig 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 626 -LMQSLNQDSNSN------FKDTLLKEREAEVRNLkqnlseleqlnenLKKVAFdVKMENEKLVLACEDVRHQLEECLAG 698
Cdd:TIGR02169 601 fAVDLVEFDPKYEpafkyvFGDTLVVEDIEAARRL-------------MGKYRM-VTLEGELFEKSGAMTGGSRAPRGGI 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 699 NNQLSLEKNtiVETLKMEKGEIEAELcwakKRLLEEANKYEKTIEELSNARnlntSALQLEHEHLIKLNQKKDMEIAELK 778
Cdd:TIGR02169 667 LFSRSEPAE--LQRLRERLEGLKREL----SSLQSELRRIENRLDELSQEL----SDASRKIGEIEKEIEQLEQEEEKLK 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 779 KNIEQMDTDHKETKDVLSSSLEEQKQLtqlinkkEIFIEKLKERSSKLQEELDKYSQALRkneilRQTIEEKDRSLGSMK 858
Cdd:TIGR02169 737 ERLEELEEDLSSLEQEIENVKSELKEL-------EARIEELEEDLHKLEEALNDLEARLS-----HSRIPEIQAELSKLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 859 EENNHLQEelerlreeqsrtapvadpktldSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKE 938
Cdd:TIGR02169 805 EEVSRIEA----------------------RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 939 MDEFRYQHEQMNATHTQLflekDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSL 1001
Cdd:TIGR02169 863 KEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
551-1098 |
1.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 551 DITKELDVQKEKL-IQSEVA---------------------LNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLEL 608
Cdd:COG1196 193 DILGELERQLEPLeRQAEKAeryrelkeelkeleaellllkLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 609 KEHIRQNEEELSRIRNELMQSLNQdsnsnfKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDV 688
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAE------LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 689 RHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAElcwakKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQ 768
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-----EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 769 KKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIE 848
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 849 EKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDsvTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQL 928
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE--AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 929 LQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIE---QIKTQLHEERQDIQTDNSDIFQETKVQSLNIEN 1005
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1006 GSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEvgKLTQIIQQKDLEIQALHARISSTSHTQDVVY 1085
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE--RELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570
....*....|...
gi 1012519614 1086 LQQQLQAYAMERE 1098
Cdd:COG1196 738 LEELLEEEELLEE 750
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
212-1129 |
4.27e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.52 E-value: 4.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 212 KLQNIIKELKQNRSQEIDDHQHEMSVLQNaHQQKLTEI-----SRRHREELS-----DYEERIEELENLLQQggsgvIET 281
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQ-YKEKACEIrdqitSKEAQLESSreivkSYENELDPLKNRLKE-----IEH 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 282 DLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDI---------------NKKLSSAENDRDILRREQEQLNVEKRQIM 346
Cdd:TIGR00606 260 NLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVfqgtdeqlndlyhnhQRTVREKERELVDCQRELEKLNKERRLLN 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 347 EECENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQAlSDAENEIMRLSSL------------NQDNSLAE 414
Cdd:TIGR00606 340 QEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERG-PFSERQIKNFHTLvierqedeaktaAQLCADLQ 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 415 DNLKLKMR------------IEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRL-----NLEA 477
Cdd:TIGR00606 419 SKERLKQEqadeirdekkglGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKaeknsLTET 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 478 KEQELNQSISEKETLIAEIEELDRQNQEATKHMILIK--DQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKE 555
Cdd:TIGR00606 499 LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTqmEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDW 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 556 LDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLnKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSN 635
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL-ESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 636 SNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKM 715
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 716 EKGEIEAELcwakKRLLEEANKYEKTIEELSNARNlntsalqlEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVl 795
Cdd:TIGR00606 738 IIDLKEKEI----PELRNKLQKVNRDIQRLKNDIE--------EQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDV- 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 796 SSSLEEQKQLTQLINKKEIFIEKLKERSSKlQEELDKYSQalrKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQ 875
Cdd:TIGR00606 805 ERKIAQQAAKLQGSDLDRTVQQVNQEKQEK-QHELDTVVS---KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 876 SRTAPVAdpktlDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEM--------DEFRYQHE 947
Cdd:TIGR00606 881 QRRQQFE-----EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAqdkvndikEKVKNIHG 955
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 948 QMNATHTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIfqetKVQSLNIENGSEKHDLSKAETERLVkgikeR 1027
Cdd:TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDM----RLMRQDIDTQKIQERWLQDNLTLRK-----R 1026
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1028 ELEIKLLNEKNISLTKQIDQLskdevgkltQIIQQKDlEIQALHARISSTSHTQDVVYLQQQlqayAMEREKVFAVLNEK 1107
Cdd:TIGR00606 1027 ENELKEVEEELKQHLKEMGQM---------QVLQMKQ-EHQKLEENIDLIKRNHVLALGRQK----GYEKEIKHFKKELR 1092
|
970 980
....*....|....*....|..
gi 1012519614 1108 TRENSHLKTEYHKMMDIVAAKE 1129
Cdd:TIGR00606 1093 EPQFRDAEEKYREMMIVMRTTE 1114
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
283-653 |
4.73e-08 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 58.53 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 283 LSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRrEQEQLNVEKRQIMEEcenlklecsklQPS 362
Cdd:PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQ-VSSQLLEKSRQAQQE-----------QDR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 363 AVKQSDTMTEkeriLAQSASveEVFRlqqALSDAENEIMRLSSLNqdNSLAEDNLKLkmrievLEKEKSLLSQEKEELQM 442
Cdd:PRK10929 132 AREISDSLSQ----LPQQQT--EARR---QLNEIERRLQTLGTPN--TPLAQAQLTA------LQAESAALKALVDELEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 443 SLLKLNNEYEVIKSTA----TRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAE--------IEELDRQNQE----- 505
Cdd:PRK10929 195 AQLSANNRQELARLRSelakKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEqsgdlpksIVAQFKINRElsqal 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 506 --ATKHMilikDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKM-------DITKELDVQKEKLIQSEVAlnDLHLT 576
Cdd:PRK10929 275 nqQAQRM----DLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNAlgealraQVARLPEMPKPQQLDTEMA--QLRVQ 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 577 KQKLEDkvenlvdQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQD-------------SNSNFKDTLL 643
Cdd:PRK10929 349 RLRYED-------LLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGgdtlileltklkvANSQLEDALK 421
|
410
....*....|
gi 1012519614 644 KEREAEVRNL 653
Cdd:PRK10929 422 EVNEATHRYL 431
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
493-1416 |
5.00e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 5.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 493 IAEIEELDRQNQEATKHMilikDQLSKQQNEGDSIISKLKQdlndekkRVHQLEDDKMDITKELDVQKEKliqSEVALND 572
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQ-------QLERLRREREKAERYQALLKEK---REYEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 573 LHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIrNELMQSLNQDSNSNFKDTLLkEREAEVRN 652
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVKEKIG-ELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 653 LKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLE---KNTIVETLKMEKGEIEAELcwakK 729
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyaeLKEELEDLRAELEEVDKEF----A 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 730 RLLEEANKYEKTIEELSNARNlntsALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLI 809
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREIN----ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 810 NKKEIFIEKLKERSSKLQEELDKYSQALRKNEilRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDS 889
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQ--RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 890 VTELASEVS---QLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLqSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKS 966
Cdd:TIGR02169 536 RYATAIEVAagnRLNNVVVEDDAVAKEAIELLKRRKAGRATFL-PLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEP 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 967 ----------LQKTIEQIKTQLHEERqdIQTDNSDIFQETKVQ---SLNIENGSEKHDLSKAETERLVKGIKERELEIKL 1033
Cdd:TIGR02169 615 afkyvfgdtlVVEDIEAARRLMGKYR--MVTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1034 LNEKNISLTKQIDQLSkDEVGKLTQIIQQKDLEIQALharisstshtqdvvylQQQLQAYAMEREKVFAVLNEKTRENSH 1113
Cdd:TIGR02169 693 LQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQL----------------EQEEEKLKERLEELEEDLSSLEQEIEN 755
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1114 LKTEYHKMMDIVAAKEAALIKLQDENKKLSTRFESSGQDMFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLqtsstgn 1193
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK------- 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1194 eaggvnsnqfEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYTGLIQSY 1273
Cdd:TIGR02169 829 ----------EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1274 EQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSAslltpqsaeclrasksevlsessellqqeleelrK 1353
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED----------------------------------E 944
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 1354 SLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQLKEKQDVLQKLLKEKDLLIK 1416
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1126-1770 |
1.46e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1126 AAKEAALIKLQDENKKLSTRFESsgQDMFRETIQNLSRIIREKDIEIDAL---SQKCQTLLAVLQTS--STGNEAGGVNS 1200
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEE--LKEAEEELEELTAELQELEEKLEELrleVSELEEEIEELQKElyALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1201 nQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYTGLIQSYEQNETKL 1280
Cdd:TIGR02168 303 -QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1281 KNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASlltpQSAECLRASKSEVLSESSELLQQELEELRKSLQEKDA 1360
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ----QEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1361 TIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQLKEKQDVLQKLLKEKDLLIKAKSD-----QLLSSNENFTNK--- 1432
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilGVLSELISVDEGyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1433 --------------VNENELLRQAVTNLKE----RILILEMDI---GKLKGENEKIVETYRGKETEYQALQETNMKFSMM 1491
Cdd:TIGR02168 538 aieaalggrlqavvVENLNAAKKAIAFLKQnelgRVTFLPLDSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1492 LREKEFECHSMKEKALAFEQLLKEKEQG----KTGEL---------------NQLL---NAVKSMQEKTVVFQQERDQVM 1549
Cdd:TIGR02168 618 LSYLLGGVLVVDDLDNALELAKKLRPGYrivtLDGDLvrpggvitggsaktnSSILerrREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1550 LALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEdsytREALAAEDREAKLRKKVTVLEEKLVSSSNAMENA 1629
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1630 S---HQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQeEKAMYSAELEKQKQLIAEWKK 1706
Cdd:TIGR02168 774 EeelAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1012519614 1707 NAENLEGKVISLQECLDEANAALDSasrLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKLMSL 1770
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1352-1680 |
1.63e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 1.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1352 RKSLQEKDATIRTLQENNHRLSDSIAATSELERKEhEQTDSEIKQLKEKQDV----LQKLLKEKDLLIKAKSdQLLSSNE 1427
Cdd:pfam15921 478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAI-EATNAEITKLRSRVDLklqeLQHLKNEGDHLRNVQT-ECEALKL 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1428 NFTNKVNENELLRQAVTNLKERILILEMDIGKLKGENEKIVETYRGKETEYQALQETNMKFSMMLREKE-----FECHSM 1502
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEarvsdLELEKV 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1503 KEKALAFEQLLKEKEQGKtgELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMEntaLQNEVQRLRDKEFRSNQELER 1582
Cdd:pfam15921 636 KLVNAGSERLRAVKDIKQ--ERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLKSAQSELEQ 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1583 LRNHL--LESEDSYT-REALAAEDREAKLRKKVTVLEEKLVSSSNAMENAS---HQASVQVESLQEQLNVVSKQRDETAL 1656
Cdd:pfam15921 711 TRNTLksMEGSDGHAmKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANkekHFLKEEKNKLSQELSTVATEKNKMAG 790
|
330 340
....*....|....*....|....
gi 1012519614 1657 QLSVSQEQVKQYALSLANLQMVLE 1680
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALD 814
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
640-1314 |
1.86e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 640 DTLLKEREAEVRNLKQNLSELEQLNE-----------NLKKVAFDVKMENEKLV-------LACEDVRHQLEECLagnNQ 701
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEkqkfylrqsviDLQTKLQEMQMERDAMAdirrresQSQEDLRNQLQNTV---HE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 702 LSLEKNTIVETLKMEKGEIEA--ELCWAKKRLLEEANKYEKTIEELSNAR-----NLNTSALQLEHEHLIKLNQKKDMEI 774
Cdd:pfam15921 154 LEAAKCLKEDMLEDSNTQIEQlrKMMLSHEGVLQEIRSILVDFEEASGKKiyehdSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 775 AELKKNI----EQMDTDHKETKDVLSSSLEE-QKQLTQLINKKEIFIEKLKERSSKLQEELDKYS--------QALRKNE 841
Cdd:pfam15921 234 SYLKGRIfpveDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqleiiqeQARNQNS 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 842 ILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKtldsVTELASEVSQLNTIKEHLEEEIkhhQKIIEDQ 921
Cdd:pfam15921 314 MYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE----LTEARTERDQFSQESGNLDDQL---QKLLADL 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 922 NQSKMQLLQSLQEQKKEMDefRYQHEQMNATHTQLFL-EKDEEIKSLQKTIEQIKT----QLHEERQDIQTDNSDIfqeT 996
Cdd:pfam15921 387 HKREKELSLEKEQNKRLWD--RDTGNSITIDHLRRELdDRNMEVQRLEALLKAMKSecqgQMERQMAAIQGKNESL---E 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 997 KVQSLNIENGSEKHDLSKAETERLVKGIKERELEiKLLNEKNISLTKQiDQLSKDEVGKLTQIIQQKDLEIQALHARISS 1076
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSE-RTVSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1077 TSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIK--------------LQDENKKL 1142
Cdd:pfam15921 540 GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrlelqefkiLKDKKDAK 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1143 STRFESSGQDMFRETIQNLS------RIIREKDIEIDALSQKCQTLLAVLQTSSTGNEAGGVN-SNQFEELLQERDKLKQ 1215
Cdd:pfam15921 620 IRELEARVSDLELEKVKLVNagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKM 699
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1216 QVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYTgLIQSYEQNETKLKNF-GQELAQVQHSI 1294
Cdd:pfam15921 700 QLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ-FLEEAMTNANKEKHFlKEEKNKLSQEL 778
|
730 740
....*....|....*....|
gi 1012519614 1295 GQLCNTKDLLLGKLDIISPQ 1314
Cdd:pfam15921 779 STVATEKNKMAGELEVLRSQ 798
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
424-1228 |
2.29e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 424 EVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQN 503
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 504 QEATKHMILIKDQLSKQQNEgdsiISKLKQDLNDEKKRVHQLEDDKMD-ITKELDVQKEKLIQSEVALNDLHLTKQKLED 582
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEE----KLAQVLKENKEEEKEKKLQEEELKlLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 583 KVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQ 662
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 663 LNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTI 742
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 743 EELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELK--KNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLK 820
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKdgVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 821 ERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEV--- 897
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKesa 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 898 ----SQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIEQ 973
Cdd:pfam02463 642 kakeSGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 974 IKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEV 1053
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1054 GKLTQIIQQKDLEI----------QALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKM-- 1121
Cdd:pfam02463 802 ELRALEEELKEEAElleeeqllieQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELee 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1122 MDIVAAKEAALIKLQDENKKLSTRFESSGQDMFREtIQNLSRIIREKDIEIDALSQKcqtllavlqTSSTGNEAGGVNSN 1201
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE-NEIEERIKEEAEILLKYEEEP---------EELLLEEADEKEKE 951
|
810 820
....*....|....*....|....*..
gi 1012519614 1202 QFEELLQERDKLKQQVKKMEEWKQQVM 1228
Cdd:pfam02463 952 ENNKEEEEERNKRLLLAKEELGKVNLM 978
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
643-1134 |
2.35e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 643 LKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVR--HQLEECLAGNNQLSLEKNTIVETLKMEKGEI 720
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKkaDELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 721 EAElcwaKKRLLEEAnkyEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMdtdhKETKDVLSSSLE 800
Cdd:PTZ00121 1439 KAE----EAKKADEA---KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA----KKKADEAKKAAE 1507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 801 EQKQLTQLINKKEIF-IEKLKERSSKLQEELDKYSQALRKNEILRQTiEEKDRSLGSMKEENNHLQEELERLREEQSRTA 879
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKkADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 880 PVADPKTLDSVTELASEVSQLNT--IKEHLEEEIKHHQ-KIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQL 956
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAeeAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 957 FLEKDEEikslQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKERELEIKLLNE 1036
Cdd:PTZ00121 1667 AKKAEED----KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1037 KNISLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENShLKT 1116
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN-LVI 1821
|
490
....*....|....*...
gi 1012519614 1117 EYHKMMDIVAAKEAALIK 1134
Cdd:PTZ00121 1822 NDSKEMEDSAIKEVADSK 1839
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
200-830 |
2.45e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 200 QGTDNSDQSEICKLQNIIKELKQNRSQEIDdhqhemsvlqnahqqklteisrrhreELSDYEERIEELENllqqggsgvi 279
Cdd:TIGR04523 60 DKNLNKDEEKINNSNNKIKILEQQIKDLND--------------------------KLKKNKDKINKLNS---------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 280 etDLSKIYEMQKT-IQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILrreqEQLNVEKRQIMEECENLKLECSK 358
Cdd:TIGR04523 104 --DLSKINSEIKNdKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKEL----EKLNNKYNDLKKQKEELENELNL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 359 LqpsavkqSDTMTEKERILAQSASveEVFRLQQALSDAENEImrlsslnqdnslaEDNLKLKMRIEVLEKEKSLLSQEKE 438
Cdd:TIGR04523 178 L-------EKEKLNIQKNIDKIKN--KLLKLELLLSNLKKKI-------------QKNKSLESQISELKKQNNQLKDNIE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 439 ELQMSLLKLNNEyevIKSTATRDISLDSELHDLRLNLEAKEQELNQS---ISEKETLIAEI--EELDRQNQEATKHMILI 513
Cdd:TIGR04523 236 KKQQEINEKTTE---ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkIKELEKQLNQLksEISDLNNQKEQDWNKEL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 514 KDQLSKQQN----------EGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDK 583
Cdd:TIGR04523 313 KSELKNQEKkleeiqnqisQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQ 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 584 VENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLL----KEREAEVRNLKQNLSE 659
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKeliiKNLDNTRESLETQLKV 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 660 LEQLNENLKKVAFDVKME---NEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLE-EA 735
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKElksKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKdDF 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 736 NKYEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMdTDHKETKDVLSSSLEEQKQLTQLINKK-EI 814
Cdd:TIGR04523 553 ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL-IKEIEEKEKKISSLEKELEKAKKENEKlSS 631
|
650
....*....|....*.
gi 1012519614 815 FIEKLKERSSKLQEEL 830
Cdd:TIGR04523 632 IIKNIKSKKNKLKQEV 647
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
285-508 |
3.45e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 285 KIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAV 364
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 365 KQSDtmTEKERILAQSASVEEVFRLQQALSDAeneimrlssLNQDNSLAEDnlkLKMRIEVLEKEKSLLSQEKEELQMSL 444
Cdd:COG4942 115 RLGR--QPPLALLLSPEDFLDAVRRLQYLKYL---------APARREQAEE---LRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1012519614 445 LKLNNEYEVIKSTATRdisLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATK 508
Cdd:COG4942 181 AELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
306-849 |
3.70e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.29 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 306 KMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQpsavKQSDTMTEKErilaqsasvEE 385
Cdd:PRK01156 191 KLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELS----SLEDMKNRYE---------SE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 386 VFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKMRIEVLE--KEKSLLSQEKEELQMSLLKLNNEYEVIKSTAtrDIS 463
Cdd:PRK01156 258 IKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDyfKYKNDIENKKQILSNIDAEINKYHAIIKKLS--VLQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 464 LDselHDLRLNLEAKEQELNQSISEKET-------LIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLN 536
Cdd:PRK01156 336 KD---YNDYIKKKSRYDDLNNQILELEGyemdynsYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 537 DEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDL-----------HLTKQKLEDKVENLVDQLNKSQESNVSIQKEN 605
Cdd:PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgtTLGEEKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 606 LELKEHIRQNEEELSRIRNELMQSLNQDSNsnfkdtLLKEREAEVRNLKQNLSELEQlnENLKKVAFDVKMENEKLvlac 685
Cdd:PRK01156 493 KDIDEKIVDLKKRKEYLESEEINKSINEYN------KIESARADLEDIKIKINELKD--KHDKYEEIKNRYKSLKL---- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 686 EDVRHQLEECLAGNNQLSlekNTIVETLKMEKGEIEAELCWAKKRLLEeankyekTIEELSNARNLNTSALQLEHEHLIK 765
Cdd:PRK01156 561 EDLDSKRTSWLNALAVIS---LIDIETNRSRSNEIKKQLNDLESRLQE-------IEIGFPDDKSYIDKSIREIENEANN 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 766 LNQKKDmEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQ 845
Cdd:PRK01156 631 LNNKYN-EIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
|
....
gi 1012519614 846 TIEE 849
Cdd:PRK01156 710 RINE 713
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
388-860 |
5.49e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 5.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 388 RLQQALSDAENEIMRLSSLNQDNSLAEDNLK-LKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDS 466
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKeKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 467 ELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQE-------ATKHMILIK--DQLSKQQNEGDSIISKLKQDLND 537
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkelkekAEEYIKLSEfyEEYLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 538 EKKRVHQLEDDKMDItKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLvdQLNKSQESNVSIQKENLELKEHIRQNEE 617
Cdd:PRK03918 326 IEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEEAKAKKEEL--ERLKKRLTGLTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 618 -------------ELSRIRNELMQSLNQ-------------DSNSNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVA 671
Cdd:PRK03918 403 ieeeiskitarigELKKEIKELKKAIEElkkakgkcpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 672 FDVKME--NEKLVLACEDVRHQL---EECLAGNNQLSLEKNT-IVETLKMEKGEIEAELCWAKKRlLEEANKYEKTIEEL 745
Cdd:PRK03918 483 RELEKVlkKESELIKLKELAEQLkelEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 746 SNA-RNLNTSALQLEHEhlikLNQKKDMEIAELKKNIEQMDTDHKE------TKDVLSSSLEEQKQLTQLINKKEIFIEK 818
Cdd:PRK03918 562 EKKlDELEEELAELLKE----LEELGFESVEELEERLKELEPFYNEylelkdAEKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1012519614 819 LKERSSKLQEELD----KYSQalRKNEILRQTIEEKDRSLGSMKEE 860
Cdd:PRK03918 638 TEKRLEELRKELEelekKYSE--EEYEELREEYLELSRELAGLRAE 681
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
165-1083 |
6.07e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.06 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 165 DIISSQQEINRLSNEVSRLESEVGHWRHIAQTSKAQGTDNSDQSEICKLQNIIKELKQNRSQEIDdhqhemsvlqnahqq 244
Cdd:TIGR01612 573 DSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYID--------------- 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 245 kltEISRRHREELSDYEERIEELENLLQQGGSGVIETDLSKIY-EMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSS 323
Cdd:TIGR01612 638 ---ELAKISPYQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYnELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQN 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 324 AENdrdilrreqeqlnvekrqimeecENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEevfrLQQALSDAENEIMRL 403
Cdd:TIGR01612 715 MET-----------------------ATVELHLSNIENKKNELLDIIVEIKKHIHGEINKD----LNKILEDFKNKEKEL 767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 404 SSLNQDNSLAEDNL-KLKMRIEVLE---KEKSLLSQEKEELQMSLLKLNNEYevikstaTRDISLdselhdlrlnleaKE 479
Cdd:TIGR01612 768 SNKINDYAKEKDELnKYKSKISEIKnhyNDQINIDNIKDEDAKQNYDKSKEY-------IKTISI-------------KE 827
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 480 QELNQSISEKETLIAEI-EELDRQNQEATKHmiliKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLE-DDKMDITKELD 557
Cdd:TIGR01612 828 DEIFKIINEMKFMKDDFlNKVDKFINFENNC----KEKIDSEHEQFAELTNKIKAEISDDKLNDYEKKfNDSKSLINEIN 903
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 558 VQKEKLIQSEVALNDLH-------LTKQKLEdKVENLVDQLNKSQESNVSIQKE-NLELKEHIRQNEEELSRIRNELMQS 629
Cdd:TIGR01612 904 KSIEEEYQNINTLKKVDeyikiceNTKESIE-KFHNKQNILKEILNKNIDTIKEsNLIEKSYKDKFDNTLIDKINELDKA 982
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 630 lnqdsnsnFKDTLLKEREAEVRNLKQNLSEL-EQLNENLKKVAFDVKMENEKlvlACEDVRHQLEECLAGNNQLSLEKNT 708
Cdd:TIGR01612 983 --------FKDASLNDYEAKNNELIKYFNDLkANLGKNKENMLYHQFDEKEK---ATNDIEQKIEDANKNIPNIEIAIHT 1051
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 709 IVETLKME-KGEIEAELCWAKKRLLEEANkyektieelSNARNLNTSALQLEHEHLIKL----NQKKDMEIAELKKNIEQ 783
Cdd:TIGR01612 1052 SIYNIIDEiEKEIGKNIELLNKEILEEAE---------INITNFNEIKEKLKHYNFDDFgkeeNIKYADEINKIKDDIKN 1122
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 784 MdtDHKETKDVlsssleeqKQLTQLINKKEIFIEKLKERSSKLQEELDK--YSQALRKNEILRQTIEEKDRSLGSMKEEN 861
Cdd:TIGR01612 1123 L--DQKIDHHI--------KALEEIKKKSENYIDEIKAQINDLEDVADKaiSNDDPEEIEKKIENIVTKIDKKKNIYDEI 1192
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 862 NHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIED------QNQSKMQLLQSLQEQ 935
Cdd:TIGR01612 1193 KKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDldeikeKSPEIENEMGIEMDI 1272
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 936 KKEMDEFRYQHEQMNATHTqLFLEKDEEI-----KSLQKT--------IEQIKTQLHEERQDIQTDNSDIFQETKvQSLN 1002
Cdd:TIGR01612 1273 KAEMETFNISHDDDKDHHI-ISKKHDENIsdireKSLKIIedfseesdINDIKKELQKNLLDAQKHNSDINLYLN-EIAN 1350
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1003 IENgsekhDLSKAETERLVKGIKERELEIKLLNeKNISltkqiDQLSKDEvgKLTQIIQQkDLEIQALHARISSTSHTQD 1082
Cdd:TIGR01612 1351 IYN-----ILKLNKIKKIIDEVKEYTKEIEENN-KNIK-----DELDKSE--KLIKKIKD-DINLEECKSKIESTLDDKD 1416
|
.
gi 1012519614 1083 V 1083
Cdd:TIGR01612 1417 I 1417
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1502-1764 |
1.45e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1502 MKEKALAFEQLLKEKEQgKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELE 1581
Cdd:COG1196 248 LEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1582 RLRNHLLESEDSYTREALAAEDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLNVVSKQRDETALQLSVS 1661
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1662 QEQVKQYALSLANLQMVLEHFQQEEKAmySAELEKQKQLIAEWKKNAENLEGKVISLQECLDEanaALDSASRLTEQLDV 1741
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAEL--EEEEEEEEEALEEAAEEEAELEEEEEALLELLAE---LLEEAALLEAALAE 481
|
250 260
....*....|....*....|...
gi 1012519614 1742 KEEQIEELKRQNELRQEMLDDVQ 1764
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYE 504
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
504-1144 |
2.12e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 504 QEATKHMILIKDQLSKQQNEgdsiISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDK 583
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKE----LKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 584 VENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFK----DTLLKEREAEVRNLKQNLSE 659
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQkeelENELNLLEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 660 LEQLNENLKKVAFDVKMENEKLVLacedVRHQLEECLAGNNQLslekNTIVETLKMEKGEIEAELCWAKKRLLEEANKYE 739
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKNKS----LESQISELKKQNNQL----KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 740 KTIEELSNARNLNTSALQLEHEHLIKLNQKKdMEIAELKKNIEQmdTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKL 819
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLK-SEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQISQNNKIISQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 820 KERSSKLQEELDKYSQalrKNEILRQTIEEKDRSLGSMKEENNhlqeelerlreeqsrtapvadpKTLDSVTELASEVSQ 899
Cdd:TIGR04523 341 NEQISQLKKELTNSES---ENSEKQRELEEKQNEIEKLKKENQ----------------------SYKQEIKNLESQIND 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 900 LNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTqlflEKDEEIKSLQKTIEQIKTQLH 979
Cdd:TIGR04523 396 LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS----VKELIIKNLDNTRESLETQLK 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 980 EERQDIQTDNSDIFQETKvqslNIENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKdEVGKLTQI 1059
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQK----ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES-KISDLEDE 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1060 IQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDEN 1139
Cdd:TIGR04523 547 LNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
....*
gi 1012519614 1140 KKLST 1144
Cdd:TIGR04523 627 EKLSS 631
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-1055 |
2.98e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 239 QNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVietDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIK-DI 317
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAE---EVRKAEELRKAEDARKAEAARKAEEERKAEEARKaED 1222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 318 NKKLSSAENDRDILRREQEQLNVEKRQIMEECEnlKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQAlsDAE 397
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR--KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA--KKA 1298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 398 NEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQmsllklnNEYEVIKSTAtrdisldselhdlrlnlEA 477
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK-------KAAEAAKAEA-----------------EA 1354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 478 KEQELNQSISEKETLIAEIEELDRQNQEATKHMILIK--DQLSKQQNEGDSIISKLKQDlNDEKKRVHQLEDDKMDITKE 555
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKKA 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 556 LDVQKEKliqSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQK-ENLELKEHIRQNEEELSRIRNELMQSLNQDS 634
Cdd:PTZ00121 1434 DEAKKKA---EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 635 NSN-FKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEklVLACEDVRhQLEECLAGNNQLSLEKNTIVETL 713
Cdd:PTZ00121 1511 KADeAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKK-KAEEAKKAEEDKNMALRKAEEAK 1587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 714 KMEKGEIEAELCW---AKKRLLEEANKYEKT---IEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTD 787
Cdd:PTZ00121 1588 KAEEARIEEVMKLyeeEKKMKAEEAKKAEEAkikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 788 HKETKDvlSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEE 867
Cdd:PTZ00121 1668 KKAEED--KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 868 LERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHE 947
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK 1825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 948 QMNATHTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHdlskaETERLVKGIKER 1027
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEAD-----EIEKIDKDDIER 1900
|
810 820
....*....|....*....|....*...
gi 1012519614 1028 ELEIKLLNEKNISLTKqiDQLSKDEVGK 1055
Cdd:PTZ00121 1901 EIPNNNMAGKNNDIID--DKLDKDEYIK 1926
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-1284 |
9.68e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 610 EHIRQNEEELSRIRNELMQSLnqdsnsnfkDTLlkEREAEV----RNLKQNLSELEQlnenlkkvafdvkmenEKLVLAC 685
Cdd:COG1196 182 EATEENLERLEDILGELERQL---------EPL--ERQAEKaeryRELKEELKELEA----------------ELLLLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 686 EDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAelcwAKKRLLEEANKYEKTIEELSNARNlNTSALQLEHEHLIK 765
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYELLA-ELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 766 LNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDkysqalrknEILRQ 845
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA---------EAEEE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 846 TIEEKDRSLGSMKEENNHLQEELERLREEQSRtapvadpktLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSK 925
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEAL---------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 926 MQLLQSLQEQKKEMDEFRYQHEQMNATHTQLfLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIEN 1005
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAEL-LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1006 GSEKHDLSKAETERLVkgikereLEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSTSHTQDVVY 1085
Cdd:COG1196 531 GVEAAYEAALEAALAA-------ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1086 LQQQLQAYAMEREKVFAVLNEKTRENSHLKTeyhkmmdivAAKEAALIKLQDENKKLSTRFESSGQDMFRETIQNLSRII 1165
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEA---------ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1166 REKDIEIDALSQKCQTLLAVLQTsstgneaggvnsnQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEEL 1245
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEE-------------ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
650 660 670
....*....|....*....|....*....|....*....
gi 1012519614 1246 HQLQAQVLVDSDNNSKLQVDYTGLIQSYEQNETKLKNFG 1284
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1542-1777 |
9.74e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 9.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1542 QQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESE---DSYTREALAAEDREAKLRKKVTVLEEK 1618
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1619 LVSssnamenashqasvQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS--AELEK 1696
Cdd:COG4942 99 LEA--------------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1697 QKQLIAEWKKNAENLEGKVISLQECLDEANAALDSA-SRLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKLMSLANSSE 1775
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLlARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 1012519614 1776 GK 1777
Cdd:COG4942 245 AA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1362-1770 |
1.19e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1362 IRTLQENNHRLSDSIAATSELERKEHEQTDS---EIKQLKEKQDVLQKLLKEKDLLIKAKSDqLLSSNENFTNKVNENEL 1438
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKEleeVLREINEISSELPELREELEKLEKEVKE-LEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1439 LRQAVTNLKERILILEMDIGKLKG------ENEKIVETYRGKETEYQALQETNMKFSMMLREKEFECHSMKEKALAFEQL 1512
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1513 LKEKEQgKTGELNQLLNAVKSMQEKTVVFQqERDQVMLALKQKQMENTALQNEVQRLR-DKEFRSNQELERLRNHLLESE 1591
Cdd:PRK03918 330 IKELEE-KEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1592 DSYTREALAAEDREAKLRKKVTVLEE-KLVSSSNAMENASHQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYAL 1670
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1671 SLANLQMV---------LEHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEANAALDSASRLTEQLDV 1741
Cdd:PRK03918 488 VLKKESELiklkelaeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
410 420 430
....*....|....*....|....*....|
gi 1012519614 1742 KEEQIEELKRQ-NELRQEMLDDVQKKLMSL 1770
Cdd:PRK03918 568 LEEELAELLKElEELGFESVEELEERLKEL 597
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
170-544 |
1.30e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 170 QQEINRLSNEVSRLESEVGHWRHIAQTSKAQGTDNSDQSEICKLQNIIKELKQNRsQEIDDHQHEMSVLQNAHQQKLTEI 249
Cdd:COG4717 108 EAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELE-EELEELEAELAELQEELEELLEQL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 250 SRRHREELSDYEERIEELENLLQQggsgvIETDLSKIYEMQKTIQVlQIEKVESTKKMEQLEDKIKD------------- 316
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAE-----LEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEarlllliaaalla 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 317 --------------------------------INKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLecsklqpsav 364
Cdd:COG4717 261 llglggsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGL---------- 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 365 kqsDTMTEKERILAQSASVEEVFRLQQALSDAENEIMRLSSLNQDNSL-----AEDNLKLKMRIEVLEKEKSLLsQEKEE 439
Cdd:COG4717 331 ---PPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlaeagVEDEEELRAALEQAEEYQELK-EELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 440 LQMSLLKLNNEYEVIKSTATRDiSLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQ-EATKHMILIKDQLS 518
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGElAELLQELEELKAEL 485
|
410 420
....*....|....*....|....*.
gi 1012519614 519 KQQNEGDSIISKLKQDLNDEKKRVHQ 544
Cdd:COG4717 486 RELAEEWAALKLALELLEEAREEYRE 511
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
463-671 |
1.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 463 SLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEgdsiISKLKQDLNDEKKRV 542
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 543 HQLEDD---------KMDITKELDV--QKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEH 611
Cdd:COG4942 100 EAQKEElaellralyRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1012519614 612 IRQNEEELSRI------RNELMQSLNQDsnsnfkdtlLKEREAEVRNLKQNLSELEQLNENLKKVA 671
Cdd:COG4942 180 LAELEEERAALealkaeRQKLLARLEKE---------LAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
482-1229 |
1.95e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 482 LNQSISEKETLIAEIEELDRQNQEATKhmilikdQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDkmdITKELDVQKE 561
Cdd:pfam12128 246 LQQEFNTLESAELRLSHLHFGYKSDET-------LIASRQEERQETSAELNQLLRTLDDQWKEKRDE---LNGELSAADA 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 562 KLiqsevalndlhltkQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQdsnsnfkdt 641
Cdd:pfam12128 316 AV--------------AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQD--------- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 642 llKEREAEVRNLK---QNLSELEQLNENLKKVafdvKMENEKLVLACEDVRHQLEeclagnNQLSLEKNTIVETLKMEKG 718
Cdd:pfam12128 373 --VTAKYNRRRSKikeQNNRDIAGIKDKLAKI----REARDRQLAVAEDDLQALE------SELREQLEAGKLEFNEEEY 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 719 EIEAELCWAKKRLleeaNKYEKTIEELSNARNlNTSALQLEHEHLIKLNQKKD---MEIAELKKNIEQMDTDHKETKDVL 795
Cdd:pfam12128 441 RLKSRLGELKLRL----NQATATPELLLQLEN-FDERIERAREEQEAANAEVErlqSELRQARKRRDQASEALRQASRRL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 796 SSSLEEQKQL-TQLINKKEIFIEKLKERSSKLQEELDKysqaLRKNEILRQTIEEKDRSLGSMKEENNHLQEELerlree 874
Cdd:pfam12128 516 EERQSALDELeLQLFPQAGTLLHFLRKEAPDWEQSIGK----VISPELLHRTDLDPEVWDGSVGGELNLYGVKL------ 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 875 qsRTAPVADPKTLDSVTELASEVSQLntikehlEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHT 954
Cdd:pfam12128 586 --DLKRIDVPEWAASEEELRERLDKA-------EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 955 QLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKEREL----- 1029
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallka 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1030 EIKLLNEKNISLTKQIDQLSKDEVGKL---TQIIQQKDLEIQALHARISSTSHTQDVV--YLQQQLQAYAMEREKVFAVL 1104
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASLgvdPDVIAKLKREIRTLERKIERIAVRRQEVlrYFDWYQETWLQRRPRLATQL 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1105 NEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENKKLSTRfessgqdmfretiqnLSRIIREKDIEIDALSQkcqtlLA 1184
Cdd:pfam12128 817 SNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR---------------LSENLRGLRCEMSKLAT-----LK 876
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1012519614 1185 VLQTSSTGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMT 1229
Cdd:pfam12128 877 EDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIA 921
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
388-670 |
2.02e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 388 RLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLS-QEKEELQMSLLKLNNEYE-------VIKSTAT 459
Cdd:COG5022 758 RYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSlLGSRKEYRSYLACIIKLQktikrekKLRETEE 837
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 460 RDISLDSE--LHDLRLNLEAKEQ---ELNQSISEKETliAEIEELDRQNQEaTKHMILIKDQLSKQQNEGDSIISKLKQD 534
Cdd:COG5022 838 VEFSLKAEvlIQKFGRSLKAKKRfslLKKETIYLQSA--QRVELAERQLQE-LKIDVKSISSLKLVNLELESEIIELKKS 914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 535 LNDE--KKRVHQLEDD----KMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLEL 608
Cdd:COG5022 915 LSSDliENLEFKTELIarlkKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSEL 994
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012519614 609 KEHIR------------QNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLS-ELEQLNENLKKV 670
Cdd:COG5022 995 KNFKKelaelskqygalQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLlENNQLQARYKAL 1069
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-801 |
2.14e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 170 QQEINRLSNEVSRLESEVGHWRHIAQTSKAQGTDNSDQSEICKLQNIIKELKQNRSQEIDDHQHEMSVLQNAHQQKLTEI 249
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 250 SRRHREELSDYEERIEELENllqqggsgvietdlskiyemqktiqvlqiEKVESTKKMEQLEDKIKDINKKLSSAENDRD 329
Cdd:COG1196 325 LAELEEELEELEEELEELEE-----------------------------ELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 330 ILRREQEQLNVEKRQIMEECENLKlecSKLQPSAVKQSDTMTEKERILAQsasveevfRLQQALSDAENEIMRLSSLNQD 409
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELA---AQLEELEEAEEALLERLERLEEE--------LEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 410 NSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEK 489
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 490 ETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLndeKKRVHQLEDDKMDITKELDVQKEKLIQSEVA 569
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK---AGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 570 LNDlhltkqKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQ--DSNSNFKDTLLKERE 647
Cdd:COG1196 602 DLV------ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAggSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 648 AEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCwA 727
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL-E 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 728 KKRLLEEANKYEKTIEELSNARNL----NTSALQlEHEHLIK-----LNQKKDME--IAELKKNIEQMDtdhKETKDVLS 796
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEAlgpvNLLAIE-EYEELEErydflSEQREDLEeaRETLEEAIEEID---RETRERFL 830
|
....*
gi 1012519614 797 SSLEE 801
Cdd:COG1196 831 ETFDA 835
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1384-1651 |
2.81e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1384 RKEHEQTDSEI---KQLKEKQDVLQKLLkEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERIlilEMDIGKL 1460
Cdd:pfam17380 302 RQEKEEKAREVerrRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEI---AMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1461 KGENEKIVETYRGKETEYQALqETNMKFSMMLREKEfecHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVV 1540
Cdd:pfam17380 378 RELERLQMERQQKNERVRQEL-EAARKVKILEEERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1541 FQQERDQVMLALKQKQMEntalQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDREAKLRKKVTVLEEKLV 1620
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270
....*....|....*....|....*....|....*.
gi 1012519614 1621 SSSNAMENASHQASVQVE-----SLQEQLNVVSKQR 1651
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmeerrRIQEQMRKATEER 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1504-1767 |
4.43e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1504 EKALAFEQLlkeKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERL 1583
Cdd:COG1196 210 EKAERYREL---KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1584 RNHLLEsedsytrealaAEDREAKLRKKVTVLEEKLvsssnamenashqasvqvESLQEQLNVVSKQRDETALQLSVSQE 1663
Cdd:COG1196 287 QAEEYE-----------LLAELARLEQDIARLEERR------------------RELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1664 QVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLIAEwkknAENLEGKVISLQECLDEANAALDSASRLTEQLDVKE 1743
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA----EEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260
....*....|....*....|....
gi 1012519614 1744 EQIEELKRQNELRQEMLDDVQKKL 1767
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEE 437
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
264-1033 |
4.47e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 264 IEELENLLQQGGSGVIETDLSKIYEMQKTIQVLQ--IEKVESTKK-MEQLEDKIKDINKKLSSAENDRDILRREQEQLNV 340
Cdd:TIGR01612 1623 LKETESIEKKISSFSIDSQDTELKENGDNLNSLQefLESLKDQKKnIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGII 1702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 341 EKRQIMEECENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALSDAENEIMRLSSLNQD-------NSLA 413
Cdd:TIGR01612 1703 EKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGcletvskEPIT 1782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 414 EDNLK---------LKMRIEVLEKEKSLLSQ-EKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDlrlnleakeqELN 483
Cdd:TIGR01612 1783 YDEIKntrinaqneFLKIIEIEKKSKSYLDDiEAKEFDRIINHFKKKLDHVNDKFTKEYSKINEGFD----------DIS 1852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 484 QSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSI---ISKLKQDLNDEKKR---VHQLEDDKMDITKELD 557
Cdd:TIGR01612 1853 KSIENVKNSTDENLLFDILNKTKDAYAGIIGKKYYSYKDEAEKIfinISKLANSINIQIQNnsgIDLFDNINIAILSSLD 1932
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 558 VQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQ------ESNVSIQKENLELKEHIRQNEE----------ELSR 621
Cdd:TIGR01612 1933 SEKEDTLKFIPSPEKEPEIYTKIRDSYDTLLDIFKKSQdlhkkeQDTLNIIFENQQLYEKIQASNElkdtlsdlkyKKEK 2012
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 622 IRNEL------MQSLNQDS-NSNFKDTLLKEREAEvrNLKQNLSELEQLNENLKkVAFDVKMENEKL---VLACEDVRHQ 691
Cdd:TIGR01612 2013 ILNDVklllhkFDELNKLScDSQNYDTILELSKQD--KIKEKIDNYEKEKEKFG-IDFDVKAMEEKFdndIKDIEKFENN 2089
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 692 LEECLAGNNQLSLEKNTIVETLK--------------------MEKGEIEAELCWAKKRLL------------------- 732
Cdd:TIGR01612 2090 YKHSEKDNHDFSEEKDNIIQSKKklkelteafnteikiiedkiIEKNDLIDKLIEMRKECLlfsyatlvetlkskvinhs 2169
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 733 ---EEANKYEKT----IEELSNARNLNTSALQLEH------EHLIKLNQ----------KKDMEIAELKKNIEQMDTDHK 789
Cdd:TIGR01612 2170 efiTSAAKFSKDffefIEDISDSLNDDIDALQIKYnlnqtkKHMISILAdatkdhnnliEKEKEATKIINNLTELFTIDF 2249
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 790 ETKDV----------------LSSSLEEQKQLTQ-----------LINKKEIFIEK-----LKERSSKLQEELDKYSQ-- 835
Cdd:TIGR01612 2250 NNADAdilhnnkiqiiyfnseLHKSIESIKKLYKkinafkllnisHINEKYFDISKefdniIQLQKHKLTENLNDLKEid 2329
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 836 ---ALRKNEILRQTIEEKDRSLGSMKE--ENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQL---------- 900
Cdd:TIGR01612 2330 qyiSDKKNIFLHALNENTNFNFNALKEiyDDIINRENKADEIENINNKENENIMQYIDTITKLTEKIQDIlifvttyend 2409
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 901 -NTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNA-------------THTQLFLEKDEEIKS 966
Cdd:TIGR01612 2410 nNIIKQHIQDNDENDVSKIKDNLKKTIQSFQEILNKIDEIKAQFYGGNNINNiiitisqnandvkNHFSKDLTIENELIQ 2489
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012519614 967 LQKTIEQIKTQLHEER--QDIQTDNSdIFQETKVQSLNIENGSEKHDLSKA-ETERLVKGIK--ERELEIKL 1033
Cdd:TIGR01612 2490 IQKRLEDIKNAAHEIRseQITKYTNA-IHNHIEEQFKKIENNSNKDEVYKInEIDNIIEKIInyNKEPEVKL 2560
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1202-1752 |
5.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1202 QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYTGLIQSYEQNETKLK 1281
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1282 NFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASLLTPQSAECLRASKSEVLSESSELLQQELEELRKSLQEKDAT 1361
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1362 IRTLQENNHRLSDSIAATSELERKEhEQTDSEIKQLKEKQDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQ 1441
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1442 AVTNLKERILILEmDIGKLKGENEKIVETYRGKETEYQALQETNMKFSmmLREKEFECHSMKEKALAFEQLLKEKEQGKT 1521
Cdd:COG1196 472 AALLEAALAELLE-ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1522 GELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAA 1601
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1602 EDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLnvvSKQRDETALQLSVSQEQVKQYALSLANLQMVLEH 1681
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL---AALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 1682 FQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQEcLDEANAALDSASRLTEQLDVKEEQIEELKRQ 1752
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE-EELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
207-928 |
1.06e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 207 QSEICKLQNIIKELKQNRSQEIDDHQHEMSV---LQNAHQQKLTEI--SRRHREE-LSDYEERIEEL-------ENLLQQ 273
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELeaAKCLKEDmLEDSNTQIEQLrkmmlshEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 274 GGSGVI---ETDLSKIYEmQKTIQVLQIEKVES--TKKMEQLEDKIKDINKKLSSAENDRDILRRE-QEQLNVEKRQIME 347
Cdd:pfam15921 189 IRSILVdfeEASGKKIYE-HDSMSTMHFRSLGSaiSKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 348 ECENLKLE-------CSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQaLSDAENEIMRL-SSLNQDNSLAEDnlkl 419
Cdd:pfam15921 268 RIEQLISEheveitgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ-LSDLESTVSQLrSELREAKRMYED---- 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 420 kmRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEvikstatrdiSLDSELHDLRLNLEAKEQEL------NQSISEKE--- 490
Cdd:pfam15921 343 --KIEELEKQLVLANSELTEARTERDQFSQESG----------NLDDQLQKLLADLHKREKELslekeqNKRLWDRDtgn 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 491 --TLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLkQDLNDEKKRVHQLeddkmdiTKELDVQKEKLIQSEV 568
Cdd:pfam15921 411 siTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-------TAQLESTKEMLRKVVE 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 569 ALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREA 648
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 649 EVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEEClagnNQLSLEKNTIVETLKMEKGEIEAElcwaK 728
Cdd:pfam15921 563 VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF----KILKDKKDAKIRELEARVSDLELE----K 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 729 KRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQ---- 804
Cdd:pfam15921 635 VKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQtrnt 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 805 -----------------LTQLINKKEIFIEKLKERSSKLQEELdkySQALRKNEILRQTIEEKDRSLGSMKEENNHLQEE 867
Cdd:pfam15921 715 lksmegsdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAM---TNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 868 LERLREEQSRtapvadpktldsvteLASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQL 928
Cdd:pfam15921 792 LEVLRSQERR---------------LKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
418-640 |
1.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 418 KLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEyevIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIE 497
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERR---IAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 498 ELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTK 577
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 578 QKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKD 640
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-666 |
1.14e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 221 KQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVIETDLSKIYEMQKTIQVLQIEK 300
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 301 VESTKKMEQLEDKIKDINK--KLSSAENDR--DILRREQEQLNVEKRQIMEEC----ENLKLECSKLQPSAVKQSDTMTE 372
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKadEAKKAEEAKkaDEAKKAEEAKKADEAKKAEEKkkadELKKAEELKKAEEKKKAEEAKKA 1572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 373 KERILAQSASVEEVFRLQQALSD------AENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMS--L 444
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEevmklyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAeeL 1652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 445 LKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIK---------- 514
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeeenkika 1732
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 515 DQLSKQQNEGDSIISKLKQDlNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHL------TKQKLEDKVENLV 588
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRrmevdkKIKDIFDNFANII 1811
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 589 D-------QLNKSQESNVSIQKENLELKEHIRQNEEELSR----IRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNl 657
Cdd:PTZ00121 1812 EggkegnlVINDSKEMEDSAIKEVADSKNMQLEEADAFEKhkfnKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEI- 1890
|
....*....
gi 1012519614 658 selEQLNEN 666
Cdd:PTZ00121 1891 ---EKIDKD 1896
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
436-941 |
1.28e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 436 EKEELQMSLLKLNNEYEVIkSTATRDISLDSELHDLRLNLEAKE---------QELNQSISEKET----LIAEIEELDRQ 502
Cdd:pfam05483 177 EREETRQVYMDLNNNIEKM-ILAFEELRVQAENARLEMHFKLKEdhekiqhleEEYKKEINDKEKqvslLLIQITEKENK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 503 NQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLED 582
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 583 KVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNEL----MQSLNQDSNSNFKDTLLKEREAEVRNLKQNLS 658
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLkiitMELQKKSSELEEMTKFKNNKEVELEELKKILA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 659 ELEQL---NENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEaelcwakkrlleea 735
Cdd:pfam05483 416 EDEKLldeKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE-------------- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 736 NKYEKTIEELSNarnlnTSALQLEHEhliKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIF 815
Cdd:pfam05483 482 KEKLKNIELTAH-----CDKLLLENK---ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 816 IEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLGSM------KEENNHLQEELERLREEQSRTAPVADPKTLDS 889
Cdd:pfam05483 554 REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnlkkQIENKNKNIEELHQENKALKKKGSAENKQLNA 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 890 VTELASEVS-QLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDE 941
Cdd:pfam05483 634 YEIKVNKLElELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADE 686
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
204-441 |
1.39e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 204 NSDQSEICKLQNIIKELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVIETDL 283
Cdd:pfam12128 660 DEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIA 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 284 SKIYEMQKTIQVLQIEKVESTKK-------MEQLEDKIKDINKKLSSAENDRDILRR----EQEQLNVEKRQIMEECENL 352
Cdd:pfam12128 740 ARRSGAKAELKALETWYKRDLASlgvdpdvIAKLKREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNI 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 353 KLECSKLQPS-AVKQSDTMTEKERILAQS-ASVEEVFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEK 430
Cdd:pfam12128 820 ERAISELQQQlARLIADTKLRRAKLEMERkASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLEDLK 899
|
250
....*....|.
gi 1012519614 431 SLLSQEKEELQ 441
Cdd:pfam12128 900 LKRDYLSESVK 910
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
410-986 |
1.58e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.82 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 410 NSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEK 489
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 490 ETLIAEIEELDRQNQEATK---------------------HMILIKDQLSKQQNEGDSIIsKLKQDLNDEKKrvhQLEDD 548
Cdd:PRK01156 242 NELSSLEDMKNRYESEIKTaesdlsmeleknnyykeleerHMKIINDPVYKNRNYINDYF-KYKNDIENKKQ---ILSNI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 549 KMDITKELDVQKeKLIQSEVALNDlHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQ 628
Cdd:PRK01156 318 DAEINKYHAIIK-KLSVLQKDYND-YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 629 SLN-QDSNSNFKDTLLKEREAEVRNLKQNLSELEQ----LNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLS 703
Cdd:PRK01156 396 ILKiQEIDPDAIKKELNEINVKLQDISSKVSSLNQriraLRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 704 LEKNTIVEtlKMEKGEIEAELCWAKKRLLEEANKY--EKTIEELSNARNLNTSAlqlehEHLIKLNQKKDMEIAELKKNI 781
Cdd:PRK01156 476 EKKSRLEE--KIREIEIEVKDIDEKIVDLKKRKEYleSEEINKSINEYNKIESA-----RADLEDIKIKINELKDKHDKY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 782 EQMDTDHKETK-DVLSSSLEEQKQLTQLINKkeIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIEE-KDRSLGSMKE 859
Cdd:PRK01156 549 EEIKNRYKSLKlEDLDSKRTSWLNALAVISL--IDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSyIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 860 ENNHLQEELERlreeqsrtapvadpktldsVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSlqeqkkeM 939
Cdd:PRK01156 627 EANNLNNKYNE-------------------IQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDI-------E 680
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1012519614 940 DEFRYQHEQMNATHTQLFlEKDEEIKSLQKTIEQIKTQLHEERQDIQ 986
Cdd:PRK01156 681 DNLKKSRKALDDAKANRA-RLESTIEILRTRINELSDRINDINETLE 726
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1510-1759 |
1.61e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1510 EQLLKEKEQGK-------TGELNQLLNAVKS-MQEKTVVFQQERDQV------MLALKQKQMENTALQNEVQRLRDKEFR 1575
Cdd:PRK10929 86 QQLNNERDEPRsvppnmsTDALEQEILQVSSqLLEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQLNEIERRLQTLGT 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1576 SNQELERLRNHLLESEdsytrealaaedrEAKLRKKVTVLEEKLVSSSNAMENA----------SHQASVQVESLQEQLN 1645
Cdd:PRK10929 166 PNTPLAQAQLTALQAE-------------SAALKALVDELELAQLSANNRQELArlrselakkrSQQLDAYLQALRNQLN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1646 VVSKQRDETALqlsvsqEQVKQYALSLANL-QMVLEHFQQEEkaMYSAELEKQKQ---LIAEWKKNAENLEGKVISLQEC 1721
Cdd:PRK10929 233 SQRQREAERAL------ESTELLAEQSGDLpKSIVAQFKINR--ELSQALNQQAQrmdLIASQQRQAASQTLQVRQALNT 304
|
250 260 270
....*....|....*....|....*....|....*...
gi 1012519614 1722 LDEANAALDSASRLTEQLDVKEEQIEELKRQNELRQEM 1759
Cdd:PRK10929 305 LREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEM 342
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
38-841 |
1.68e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 38 LMEGTEEVEELPDSRTKEIEAIHAILRSENERLKKLCTDLEEKHEASEIQIKQQSTSYRNQLQQKEVEISHLKARQIALQ 117
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 118 DQLLKLQSAAQSVpsgagvpattassSFAYGISHHPSAFHDDDMDFGDIISSQQEINRLSNEVSRLESEVGHWRHIAQTS 197
Cdd:pfam02463 258 QEIEKEEEKLAQV-------------LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 198 KAQGTDNSDQSEICKLQNIIKELKQNRSQEIDDHQhEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSG 277
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEE-ELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 278 VIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRqimEECENLKLECS 357
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK---SEDLLKETQLV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 358 KLQPSAVKQSDTMTEKERILAQSASVE------------EVFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKMRIEV 425
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSglkvllalikdgVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEV 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 426 LEKEK-------SLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEE 498
Cdd:pfam02463 561 EERQKlvralteLPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKES 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 499 LDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQ 578
Cdd:pfam02463 641 AKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 579 KLEDKVENLVDQLNKSqesnvsIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSnsnfkdtLLKEREAEVRNLKQNLS 658
Cdd:pfam02463 721 ELLADRVQEAQDKINE------ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS-------LKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 659 ELEQLNENLKKVAFDVKMENEKLVLACEdvrhQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKY 738
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAE----LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEI 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 739 EKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLIN-----KKE 813
Cdd:pfam02463 864 TKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeelLLE 943
|
810 820
....*....|....*....|....*...
gi 1012519614 814 IFIEKLKERSSKLQEELDKYSQALRKNE 841
Cdd:pfam02463 944 EADEKEKEENNKEEEEERNKRLLLAKEE 971
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1523-1752 |
2.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1523 ELNQLLNAVKSMQEktvvfQQERDQVMLALKQKQMENTALQNEVQRLRDK--EFRSNQELERLRNHLLESEDSYTReala 1600
Cdd:COG4913 236 DLERAHEALEDARE-----QIELLEPIRELAERYAAARERLAELEYLRAAlrLWFAQRRLELLEAELEELRAELAR---- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1601 AEDREAKLRKKVTVLEEKLVSSSNAMENASHQasvQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQmvle 1680
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---- 379
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012519614 1681 hfqqeekamysAELEKQKQLIAEWKKNAENLEgkvislQECLDEANAALDSASRLTEQLDVKEEQIEELKRQ 1752
Cdd:COG4913 380 -----------EEFAALRAEAAALLEALEEEL------EALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1634-1766 |
3.35e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1634 SVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLehfqqeekAMYSAELEKQKQLIAEWKKNAENLEG 1713
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL--------SAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 1714 KVISLQECLDEANAALDSASRlteQLDVKEEQIEELKRQNELRQEMLDDVQKK 1766
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALA---QVELLNQQIAALRRQLAALEAALDASEKR 166
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
640-1227 |
3.97e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 640 DTLLKEREAEVRNLKQ--NLSELEQLNENLKKV--AFDVKMEN-EKLVLACEDVRHQLEEclagNNQLSLEKNTIVETLK 714
Cdd:PRK03918 138 DAILESDESREKVVRQilGLDDYENAYKNLGEVikEIKRRIERlEKFIKRTENIEELIKE----KEKELEEVLREINEIS 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 715 MEKGEIEAELCWAKKRLLEeankYEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDMeIAELKKNIEQMDTDHKEtkdv 794
Cdd:PRK03918 214 SELPELREELEKLEKEVKE----LEELKEEIEELEKELESLEGSKRKLEEKIRELEER-IEELKKEIEELEEKVKE---- 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 795 lsssLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELER---- 870
Cdd:PRK03918 285 ----LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEleer 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 871 ------LREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRY 944
Cdd:PRK03918 361 helyeeAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 945 QHEQMNATHTQLFLEK-DEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSL--------NIENGSEKHDLSKA 1015
Cdd:PRK03918 441 CGRELTEEHRKELLEEyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlkELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1016 ETerlvkgiKERELEikLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSTSHtqdvvyLQQQLQAYAM 1095
Cdd:PRK03918 521 EK-------KAEEYE--KLKEKLIKLKGEIKSL-KKELEKLEELKKKLAELEKKLDELEEELAE------LLKELEELGF 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1096 EREKvfaVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENKKLSTRFE-----SSGQDMFRETIQNLSRIIREKDI 1170
Cdd:PRK03918 585 ESVE---ELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEelaetEKRLEELRKELEELEKKYSEEEY 661
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1012519614 1171 E-IDALSQKCQTLLAVLQTSSTGNEaggvnsNQFEELLQERDKLKQQVKKMEEWKQQV 1227
Cdd:PRK03918 662 EeLREEYLELSRELAGLRAELEELE------KRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
773-986 |
4.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 773 EIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKdr 852
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 853 slgsmKEENNHLQEELERLREEQSRTAPVA------DPKTLDSVTELASEVS-----QLNTIKEHLEEeIKHHQKIIEDQ 921
Cdd:COG4942 99 -----LEAQKEELAELLRALYRLGRQPPLAlllspeDFLDAVRRLQYLKYLAparreQAEELRADLAE-LAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012519614 922 NQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQ 986
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1009-1619 |
5.45e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1009 KHDLSKAETERLVKGIKERELEIK-LLNEknisLTKQIDQLSKD-----EVGKLTQIIQQKDLEIQALHARisstshtqd 1082
Cdd:COG1196 169 KYKERKEEAERKLEATEENLERLEdILGE----LERQLEPLERQaekaeRYRELKEELKELEAELLLLKLR--------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1083 vvYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIKLQDENKKLSTRFES--SGQDMFRETIQN 1160
Cdd:COG1196 236 --ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARleQDIARLEERRRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1161 LSRIIREKDIEIDALSQKCQTLLAVLQTSstgNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQ 1240
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1241 LQEELHQLQAQVLVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASL 1320
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1321 LTPQSAECLRASKSEVLSESSELLQQELEELRKSLQEKDATIRTLQENNHRLSDSIAATSELErKEHEQTDSEIKQLKEK 1400
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE-AAYEAALEAALAAALQ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1401 QDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERILI------LEMDIGKLKGENEKIVETYRGK 1474
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvasdLREADARYYVLGDTLLGRTLVA 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1475 ETEYQALqETNMKFSMMLREKEFECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQ 1554
Cdd:COG1196 630 ARLEAAL-RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1012519614 1555 KQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDRE---AKLRKKVTVLEEKL 1619
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdlEELERELERLEREI 776
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
255-990 |
6.20e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 255 EELSDYEERIEELENLLQQGGSGVIETDLSKIYEMQKtiQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDIL--R 332
Cdd:TIGR00618 212 CMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK--REAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 333 REQEQLNVEKRQIMEECENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALSDAENEI--------MRLS 404
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahevatSIRE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 405 SLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQmsllklnneyevikSTATRDISLDSELHDLRLNLEAKEQELnq 484
Cdd:TIGR00618 370 ISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQ--------------REQATIDTRTSAFRDLQGQLAHAKKQQ-- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 485 sisEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQ-KEKL 563
Cdd:TIGR00618 434 ---ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPlCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 564 IQSEVALNDLHLTkQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELmQSLNQdsnsnfKDTLL 643
Cdd:TIGR00618 511 IHPNPARQDIDNP-GPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF-SILTQ------CDNRS 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 644 KEREAEVRNLKQNLSELEQLNENLKKvafdvkmeneklVLACEDVRHQLEECLAGNNQ-LSLEKNTIVETLKMEKGEIEA 722
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAED------------MLACEQHALLRKLQPEQDLQdVRLHLQQCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 723 ELCWAKKRLLEEANKYEKTIEELSNARNLNtsalqlehehLIKLNQKKDMEIAELKKNIEQMDTDHKEtkdVLSSSLEEQ 802
Cdd:TIGR00618 651 LQLTLTQERVREHALSIRVLPKELLASRQL----------ALQKMQSEKEQLTYWKEMLAQCQTLLRE---LETHIEEYD 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 803 KQLTQLINKKEIFIEKLKERSSKLQEELDKYsQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRtapva 882
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKEL-MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN----- 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 883 dpktldsvTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMnathtqlfLEKDE 962
Cdd:TIGR00618 792 --------RLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ--------LLKYE 855
|
730 740
....*....|....*....|....*...
gi 1012519614 963 EIKSLQKTIEQIKTQLHEERQDIQTDNS 990
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKLNGINQ 883
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
665-1400 |
6.98e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 665 ENLKKVAFDVKMENEKLVLA---CEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELCWAkkrllEEANKYE-- 739
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAvkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKADel 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 740 KTIEELSNARNLNTSALQLEHEHLIKLNQKKDmEIAELKKNIEQMdtdhKETKDVLSSSLEEQKQLTQLINKK-EIFIEK 818
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEA----KKKADAAKKKAEEAKKAAEAAKAEaEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 819 LKERSSKLQEELDKYSQALRKNEILRQTIEEKDRSlgsmkEENNHLQEELERLREEQSRTApvADPKTLDSVTELASEVS 898
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA-----DEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAEEKK 1431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 899 QLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQmnATHTQLFLEKDEEIKslqKTIEQIKTQL 978
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKKKAEEAK---KKADEAKKAA 1506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 979 HEERQDIQTDNSDifQETKVQSL-NIENGSEKHDLSKAETERLVKGIKERElEIKLLNEKnisltKQIDQLSKDEVGKLT 1057
Cdd:PTZ00121 1507 EAKKKADEAKKAE--EAKKADEAkKAEEAKKADEAKKAEEKKKADELKKAE-ELKKAEEK-----KKAEEAKKAEEDKNM 1578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1058 QIIQQKDLEiQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHlKTEYHKMMDIVAAKEAALIKLQD 1137
Cdd:PTZ00121 1579 ALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK-KVEQLKKKEAEEKKKAEELKKAE 1656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1138 ENKKLSTRFESSGQDMFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTSSTGNE----------AGGVNSNQFEELL 1207
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekkkaeelkkAEEENKIKAEEAK 1736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1208 QERDKLK---QQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYT--------GLIQSYEQN 1276
Cdd:PTZ00121 1737 KEAEEDKkkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKikdifdnfANIIEGGKE 1816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1277 ETKLKNFGQELAQvqHSIGQLCNTKDLLLGKLDIISPQLSSASLLTPQSAECLRASKSEVLSESSELLQQELEELRKSLQ 1356
Cdd:PTZ00121 1817 GNLVINDSKEMED--SAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKID 1894
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 1012519614 1357 ----EKDATIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQLKEK 1400
Cdd:PTZ00121 1895 kddiEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKK 1942
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
979-1282 |
7.46e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 979 HEERQDIQTDNSDIFQETKVQslniENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEvGKLTQ 1058
Cdd:PLN02939 96 DHNRASMQRDEAIAAIDNEQQ----TNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK-EALQG 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1059 IIQQKDLEIQALHARISSTSHTQ-DVVYLQQQLQAY----AMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALI 1133
Cdd:PLN02939 171 KINILEMRLSETDARIKLAAQEKiHVEILEEQLEKLrnelLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1134 KLQDENKKLSTR------FESSGQDMFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTSSTGNEAGGVNSNQFEELL 1207
Cdd:PLN02939 251 EVAETEERVFKLekerslLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLR 330
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012519614 1208 QERDKLKQQVKKMEEWKQQvMTTVQNMQHESAQLQEELHQlqaqvlVDSDNNSKLQVdYTGLIQSYEQNETKLKN 1282
Cdd:PLN02939 331 DKVDKLEASLKEANVSKFS-SYKVELLQQKLKLLEERLQA------SDHEIHSYIQL-YQESIKEFQDTLSKLKE 397
|
|
| GRAB |
pfam10375 |
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type ... |
1773-1818 |
8.19e-04 |
|
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type proteins. This domain is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The Arf small GTPase is localized to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane.
Pssm-ID: 431241 Cd Length: 49 Bit Score: 39.13 E-value: 8.19e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1012519614 1773 SSEGKVDKVLMRNLFIGHFHTPK--NQRHEVLRLMGSILGVRREEMEQ 1818
Cdd:pfam10375 1 SSEDTVDRQLVTNLLLSFLSIPRgdTKKFEILQLIANLLEWDDEQREQ 48
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
480-860 |
9.57e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 9.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 480 QELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQ-------QNEGDSIISKL---KQDLNDEKKRVHQLEDDK 549
Cdd:pfam10174 296 QELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKeqraailQTEVDALRLRLeekESFLNKKTKQLQDLTEEK 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 550 MDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQ-------------KENLELKEHI---- 612
Cdd:pfam10174 376 STLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQtdssntdtalttlEEALSEKERIierl 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 613 RQNEEELSRIRNELMQSLNQDsNSNFKDTL------LKEREAEVRNLKQNLSELEQlnENLKKVAFDVKMENEklvlace 686
Cdd:pfam10174 456 KEQREREDRERLEELESLKKE-NKDLKEKVsalqpeLTEKESSLIDLKEHASSLAS--SGLKKDSKLKSLEIA------- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 687 dVRHQLEECLAGNNQLSLEKNT-IVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNA---------------RN 750
Cdd:pfam10174 526 -VEQKKEECSKLENQLKKAHNAeEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGIlrevenekndkdkkiAE 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 751 LNTSALQLEHEHLIKLNQKKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQkqltqlinkkeifIEKLKERSSKLQEEL 830
Cdd:pfam10174 605 LESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQ-------------LEELMGALEKTRQEL 671
|
410 420 430
....*....|....*....|....*....|
gi 1012519614 831 DKYSQALRKNEilrQTIEEKDRSLGSMKEE 860
Cdd:pfam10174 672 DATKARLSSTQ---QSLAEKDGHLTNLRAE 698
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
297-724 |
1.04e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 297 QIEKVEST---KKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNV---EKRQIMEECENLKLECSKLQpsavkQSDTM 370
Cdd:PRK02224 195 QIEEKEEKdlhERLNGLESELAELDEEIERYEEQREQARETRDEADEvleEHEERREELETLEAEIEDLR-----ETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 371 TEKERilaqSASVEEVFRLQQALSDAENEIM-RLSSLNQDNSLAEDnlkLKMRIEVLEKEKSLLSQEKEELQMSLLKLNN 449
Cdd:PRK02224 270 TERER----EELAEEVRDLRERLEELEEERDdLLAEAGLDDADAEA---VEARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 450 EYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMIL-------IKDQLSKQQN 522
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdlgnaedFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 523 EGDSIISKLKQDLNDEKKRVHQ----LEDDK-------------MDITKELDVQKEKLiqsEVALNDLHLTKQKLEDKVE 585
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEaealLEAGKcpecgqpvegsphVETIEEDRERVEEL---EAELEDLEEEVEEVEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 586 NLVDQlnKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREA------------EVRNL 653
Cdd:PRK02224 500 RAEDL--VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAaeaeeeaeeareEVAEL 577
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 654 KQNLSELEQLNENLKKVAfdvkmENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAEL 724
Cdd:PRK02224 578 NSKLAELKERIESLERIR-----TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1514-1777 |
1.15e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1514 KEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQEL-----ERLRNHLL 1588
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIklaaqEKIHVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1589 ESEDSYTREALAAE-----DREAKLRKKVTVLEEKLVSSSNAMEnASHQASVQVESLQEQLNVVSKQRD--ETALQ---- 1657
Cdd:PLN02939 200 EEQLEKLRNELLIRgategLCVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEERVFKLEKERSllDASLReles 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1658 -LSVSQEQV-KQYALSLANLQMVLEHFQqeekAMYSAELEKQKQLIAEWKKNaENLEGKVISLQECLDEANAALDSASR- 1734
Cdd:PLN02939 279 kFIVAQEDVsKLSPLQYDCWWEKVENLQ----DLLDRATNQVEKAALVLDQN-QDLRDKVDKLEASLKEANVSKFSSYKv 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1012519614 1735 --LTEQLDVKEEQI----EELKRQNELRQEMLDDVQKKLMSLANSSEGK 1777
Cdd:PLN02939 354 elLQQKLKLLEERLqasdHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
528-745 |
1.18e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 528 ISKLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKsqesnvsIQKENLE 607
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-------LEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 608 LKEHIRQNEEELSRIRNELMQSLNQD------SNSNFKDT---------LLKEREAEVRNLKQNLSELEQLNENLKKvaf 672
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPplalllSPEDFLDAvrrlqylkyLAPARREQAEELRADLAELAALRAELEA--- 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 673 dvkmENEKLvlacEDVRHQLEECLAGNNQLSLEKNTIVETLKMEKGEIEAELcwakKRLLEEANKYEKTIEEL 745
Cdd:COG4942 172 ----ERAEL----EALLAELEEERAALEALKAERQKLLARLEKELAELAAEL----AELQQEAEELEALIARL 232
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
255-749 |
1.37e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 255 EELSDYEERIEELENLLQQggsgvIETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRRE 334
Cdd:PRK02224 241 EVLEEHEERREELETLEAE-----IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEAR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 335 QEQLNVEKrqimEECENLKLECSKLQPSAVKQSDTMTEKERILAQSASveevfRLQQALSDAENEImrlsslnqdNSLAE 414
Cdd:PRK02224 316 REELEDRD----EELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-----ELREEAAELESEL---------EEARE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 415 DNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTAtrdisldSELHDLRLNLEAKEQELNQSISEKETLIA 494
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER-------DELREREAELEATLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 495 E---------------IEELDRQNQEATKHMILIkDQLSKQQNEGDSIISKLKqDLNDEKKRVHQLEDDKMDITKELDVQ 559
Cdd:PRK02224 451 AgkcpecgqpvegsphVETIEEDRERVEELEAEL-EDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 560 KEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNelmqslnqdsnsnfk 639
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER--------------- 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 640 dtlLKEREAEVRNLKQnlsELEQLNENLKKVAFDVKMENEKLVLACEDVRhQLEECLAGNN--QLSLEKNTIVETLKMEK 717
Cdd:PRK02224 594 ---IRTLLAAIADAED---EIERLREKREALAELNDERRERLAEKRERKR-ELEAEFDEARieEAREDKERAEEYLEQVE 666
|
490 500 510
....*....|....*....|....*....|..
gi 1012519614 718 GEIEaELCWAKKRLLEEANKYEKTIEELSNAR 749
Cdd:PRK02224 667 EKLD-ELREERDDLQAEIGAVENELEELEELR 697
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
214-839 |
1.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 214 QNIIKELKQNRSQEIDDHQHEMSVLQNAHqqklteisrrhreELSDYEERIEELENLLQ--QGGSGVIETDLSKIYEMQK 291
Cdd:pfam12128 213 PPKSRLNRQQVEHWIRDIQAIAGIMKIRP-------------EFTKLQQEFNTLESAELrlSHLHFGYKSDETLIASRQE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 292 TIQVLQIEKVESTKKME-QLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEE-CENLKLECSKLqPSAVKQSDT 369
Cdd:pfam12128 280 ERQETSAELNQLLRTLDdQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQL-PSWQSELEN 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 370 MTEKERILAQSA-SVEEVFRLQQALSDAEN--EIMRLSSlNQDNSLAEDNLKLKMRIEVLEKeksLLSQEKEELQMSLLK 446
Cdd:pfam12128 359 LEERLKALTGKHqDVTAKYNRRRSKIKEQNnrDIAGIKD-KLAKIREARDRQLAVAEDDLQA---LESELREQLEAGKLE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 447 LNNEYEVIKS------------TATRDISLDSELHDLRLnlEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIK 514
Cdd:pfam12128 435 FNEEEYRLKSrlgelklrlnqaTATPELLLQLENFDERI--ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 515 DQLSKQQNEGD-----------SIISKLKQDLNDEKKRVHQL-------------EDDKMDITKELDVQKEKLIQSEVAL 570
Cdd:pfam12128 513 RRLEERQSALDelelqlfpqagTLLHFLRKEAPDWEQSIGKVispellhrtdldpEVWDGSVGGELNLYGVKLDLKRIDV 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 571 NDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQS-LNQDSNSNfkdtllkEREAE 649
Cdd:pfam12128 593 PEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNArLDLRRLFD-------EKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 650 VRNLKQNL-SELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEEclagnnqLSLEKNTIVETLKMEKGEIEAELCWAK 728
Cdd:pfam12128 666 KDKKNKALaERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKRE-------ARTEKQAYWQVVEGALDAQLALLKAAI 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 729 KRLLEEANKYEKTIEElSNARNLntSALQLEHEHLIKLNQkkdmEIAELKKNIEQMDTDHKET----------------- 791
Cdd:pfam12128 739 AARRSGAKAELKALET-WYKRDL--ASLGVDPDVIAKLKR----EIRTLERKIERIAVRRQEVlryfdwyqetwlqrrpr 811
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 792 -----KDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRK 839
Cdd:pfam12128 812 latqlSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRG 864
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
773-989 |
1.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 773 EIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRKneiLRQTIEEKDR 852
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA---QKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 853 SLGSMKEENNHLQEELERLREEQSRTAPVAD---PKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLL 929
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylaPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 930 QSLQEQKKEMDEFRyqhEQMNATHTQLfLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDN 989
Cdd:COG4942 192 ALKAERQKLLARLE---KELAELAAEL-AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
885-1303 |
1.64e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 885 KTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIE--DQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLfLEKDE 962
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERLEELEERLEEL-RELEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 963 EIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETkvqslniengsekhdlsKAETERLVKGIKERELEIKLLNEKNISLT 1042
Cdd:COG4717 164 ELEELEAELAELQEELEELLEQLSLATEEELQDL-----------------AEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1043 KQIDQLSKD-EVGKLTQIIQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTE---- 1117
Cdd:COG4717 227 EELEQLENElEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKeaee 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1118 ---YHKMMDIVAAKEAALIKLQDENKKLSTRFESSGQDMFRETIQNLSRIIR-EKDIEIDALSQKCQTLLAvlqtsstgn 1193
Cdd:COG4717 307 lqaLPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEElEEELQLEELEQEIAALLA--------- 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1194 EAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESA-----QLQEELHQLQAQVlvdsdnnsklqvdytg 1268
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeELEEELEELEEEL---------------- 441
|
410 420 430
....*....|....*....|....*....|....*
gi 1012519614 1269 liqsyEQNETKLKNFGQELAQVQHSIGQLCNTKDL 1303
Cdd:COG4717 442 -----EELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-669 |
1.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 477 AKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSI---ISKLKQDLNDEKKRVHQLEDDKMDIT 553
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALarrIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 554 KELDVQKEKLIQSEVAlndlhLTKQKLEDKVENLV-----DQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQ 628
Cdd:COG4942 97 AELEAQKEELAELLRA-----LYRLGRQPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1012519614 629 SLNQdsnsnfKDTLLKEREAEVRNLKQNLSELEQLNENLKK 669
Cdd:COG4942 172 ERAE------LEALLAELEEERAALEALKAERQKLLARLEK 206
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1352-1667 |
1.92e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1352 RKSLQEKDATIRTLQENNHRLSDS---------------------IAATSELERKEHEQTDSEIKQLKEKQDVLQKLLKE 1410
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRRErekaeryqallkekreyegyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1411 KDLLIKAKSDQLLSSNENFtNKVNENELLRqavtnlkeriliLEMDIGKLKGENEKIVETYRGKETEYQALQETNMKFSM 1490
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKI-KDLGEEEQLR------------VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1491 MLREKEFECHSMkEKALAFEQLLKEKEQGKTGELNQLLNAVKS-MQEKTVVFQQERDQVMLALKQKQM---ENTALQNEV 1566
Cdd:TIGR02169 330 EIDKLLAEIEEL-EREIEEERKRRDKLTEEYAELKEELEDLRAeLEEVDKEFAETRDELKDYREKLEKlkrEINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1567 QRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDREAKLRKKvtvlEEKLVSSSNAMENASHqasvQVESLQEQLNV 1646
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQ----ELYDLKEEYDR 480
|
330 340
....*....|....*....|.
gi 1012519614 1647 VSKQRDETALQLSVSQEQVKQ 1667
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1331-1767 |
2.67e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1331 ASKSEVLSESSELLQQELEELRKSLQEKDATIRTLQENNHRLSDSIAAtselERKEHEQTDSEIKQLKEKQDVLQKLLKE 1410
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR----LEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1411 KDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERILILEMDIGKLKGENEKIVETYRGKETEYQALQETNMKFSM 1490
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1491 MLREKEFECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLR 1570
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1571 DKEFRSNQELERLRNHLLESEDSYTREALAAEDREAK----LRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLNV 1646
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1647 VSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEAN 1726
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1012519614 1727 AALDSASRLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKL 1767
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
440-852 |
3.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 440 LQMSLLKLNNEYEVI-KSTATRDISLDSELHDLRLNL---EAKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKD 515
Cdd:COG4717 44 RAMLLERLEKEADELfKPQGRKPELNLKELKELEEELkeaEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 516 QLSKQQNEGDsiISKLKQDLNDEKKRVHQLEddkmditKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENL----VDQL 591
Cdd:COG4717 124 LLQLLPLYQE--LEALEAELAELPERLEELE-------ERLEELRELEEELEELEAELAELQEELEELLEQLslatEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 592 NKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKER-----EAEVRNLKQNLSELEQLNEN 666
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 667 LKKVAFDVK----MENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKmekgEIEAELCWAKKRLLEEANKYEKTI 742
Cdd:COG4717 275 IAGVLFLVLgllaLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLA----ALGLPPDLSPEELLELLDRIEELQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 743 EELSNARNLNTSALQLEHEHLIK--LNQKKDMEIAELKKNIEQMDTDHKETKDV------LSSSLEEQKQLTQLINKKEI 814
Cdd:COG4717 351 ELLREAEELEEELQLEELEQEIAalLAEAGVEDEEELRAALEQAEEYQELKEELeeleeqLEELLGELEELLEALDEEEL 430
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1012519614 815 F--IEKLKERSSKLQEELDKYSQALRKNEILRQTIEEKDR 852
Cdd:COG4717 431 EeeLEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
527-750 |
3.47e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 527 IISKLKQDLNDEKKrvhqleddkmdITKELDVQKEKliQSEVALNDLHLTKQKLEDKVENLVDQLNksqesnvsiqkenl 606
Cdd:PRK05771 58 ALDKLRSYLPKLNP-----------LREEKKKVSVK--SLEELIKDVEEELEKIEKEIKELEEEIS-------------- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 607 ELKEHIRQNEEELSRIR-----NELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKL 681
Cdd:PRK05771 111 ELENEIKELEQEIERLEpwgnfDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELS 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012519614 682 vlacEDVRHQLEECLAGNNQLSLEK--NTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTI----EELSNARN 750
Cdd:PRK05771 191 ----DEVEEELKKLGFERLELEEEGtpSELIREIKEELEEIEKERESLLEELKELAKKYLEELlalyEYLEIELE 261
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-785 |
3.58e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 219 ELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDY-------EERIEELENLLQQggsgvIETDLSKIYEMQK 291
Cdd:COG5022 878 ELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLienlefkTELIARLKKLLNN-----IDLEEGPSIEYVK 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 292 TIQVLQIEKVESTKKMEQLE-------------------DKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEecenl 352
Cdd:COG5022 953 LPELNKLHEVESKLKETSEEyedllkkstilvregnkanSELKNFKKELAELSKQYGALQESTKQLKELPVEVAE----- 1027
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 353 klecsklQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALSDAENEIMrlsSLNQDNSLAEDNLKLKMRIeVLEKEKSL 432
Cdd:COG5022 1028 -------LQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKAL---KLRRENSLLDDKQLYQLES-TENLLKTI 1096
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 433 LSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEATKHMIL 512
Cdd:COG5022 1097 NVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAA 1176
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 513 IKDQLSKQQNEGDsIISKLKQDLNDEKKRVHQLEDDKmdiTKELDVQKEKLIQSEVALNDLHLTKQKLED---------- 582
Cdd:COG5022 1177 LSEKRLYQSALYD-EKSKLSSSEVNDLKNELIALFSK---IFSGWPRGDKLKKLISEGWVPTEYSTSLKGfnnlnkkfdt 1252
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 583 ----KVENLVDQLNKSQESNVSIQKENLELKEHIRQNE--------EELSRIRNELMQSLNQDSNSNFKDTLLKEREAEV 650
Cdd:COG5022 1253 pasmSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLqyinvglfNALRTKASSLRWKSATEVNYNSEELDDWCREFEI 1332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 651 RNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTIVETLKmekgEIEAELCWAKKR 730
Cdd:COG5022 1333 SDVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILK----KIEALLIKQELQ 1408
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1012519614 731 L--LEEANKYEKTIEELSNARNLntsaLQLEHEHLIKlNQKKDMEIAEL-KKNIEQMD 785
Cdd:COG5022 1409 LslEGKDETEVHLSEIFSEEKSL----ISLDRNSIYK-EEVLSSLSALLtKEKIALLD 1461
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
212-662 |
4.08e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 212 KLQNIIKELKQNRsQEIDDHQHEMSVLQNAHQ-QKLTEISRRHREELSDYEERIEELENLLQQggsgvIETDLSKIYEMQ 290
Cdd:COG4717 96 ELEELEEELEELE-AELEELREELEKLEKLLQlLPLYQELEALEAELAELPERLEELEERLEE-----LRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 291 KTIQVLQIEKVESTKKM-EQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEECENLKLECSKLQPSAVKQsdt 369
Cdd:COG4717 170 AELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK--- 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 370 mtEKERILAQSASVEEVFRLQQALSDAENEIMRLsslnqdnslaednlkLKMRIEVLEKEKSLLSQEKEELQMSLLKLNN 449
Cdd:COG4717 247 --EARLLLLIAAALLALLGLGGSLLSLILTIAGV---------------LFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 450 EYEvikSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEAtkhmilikdQLSKQQNEGDSIIS 529
Cdd:COG4717 310 LPA---LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL---------QLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 530 KLKQDLNDEKKRVHQLEDDKMDITKELDVQKEKLiqsevalndlhltkQKLEDKVENLVDQLNKSQesnvsIQKENLELK 609
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQL--------------EELLGELEELLEALDEEE-----LEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1012519614 610 EHIRQNEEELSRIRNELmQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQ 662
Cdd:COG4717 439 EELEELEEELEELREEL-AELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1401-1762 |
4.96e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1401 QDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERILILEMDIGKLKGENEKIVETYRGKETEYQA 1480
Cdd:pfam07888 33 QNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1481 LQEtnmKFSMMLREKEFECHSMKEKALAFeQLLKEKEQGKTGELNQLLNAVKsmqektvvfqqerdQVMLALKQKQMENT 1560
Cdd:pfam07888 113 LSE---EKDALLAQRAAHEARIRELEEDI-KTLTQRVLERETELERMKERAK--------------KAGAQRKEEEAERK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1561 ALQNEVQRLRDKEFRSNQELERLRNHLLESEDSytreALAAEDREAKLRKKVTVLEEKLVSSSNAME---------NASH 1631
Cdd:pfam07888 175 QLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQ----VLQLQDTITTLTQKLTTAHRKEAENEALLEelrslqerlNASE 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1632 QAsvqVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLE----HFQQEEKAM-------------YSAEL 1694
Cdd:pfam07888 251 RK---VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALRegraRWAQERETLqqsaeadkdriekLSAEL 327
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1012519614 1695 EKQKQLIAEWKKNAENLEGKVISLQEC-----------LDEANAALDSASRLTEQLDVKEEQIEELKRQNELRQEMLDD 1762
Cdd:pfam07888 328 QRLEERLQEERMEREKLEVELGREKDCnrvqlsesrreLQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1204-1762 |
5.52e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1204 EELLQERDKLKQQVKKMEEWKQqvmttvqnmqhesaqLQEELHQLQAQVLVDSDNNskLQVDYTGLIQSYEQNETKLKNF 1283
Cdd:COG1196 196 GELERQLEPLERQAEKAERYRE---------------LKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1284 GQELAQVQHSIGQLcntKDLLLGKLDIISPQLSSASLLTPQSAECLRASKSEVLSESSELLQQE--LEELRKSLQEKDAT 1361
Cdd:COG1196 259 EAELAELEAELEEL---RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEelEEELAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1362 IRTLQEnnhrlsdsIAATSELERKEHEQTDSEIKQLKEKQDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQ 1441
Cdd:COG1196 336 EEELEE--------LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1442 AVTNLKERILILEMDIGKLKGENEKIVETYRGKETEYQALQETNMKfsmmLREKEFECHSMKEKALAFEQLLKEKEQGKT 1521
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE----LEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1522 GELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMEntALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAA 1601
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR--GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1602 EDREAKLRKK-------VTVLEEKLVSSSNAMENASHQASVQVESLQEQLNVVSKQRDETAL-----------------Q 1657
Cdd:COG1196 562 AIEYLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtlvaarleaalrravT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1658 LSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEANAALDSASRLTE 1737
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580
....*....|....*....|....*
gi 1012519614 1738 QLDVKEEQIEELKRQNELRQEMLDD 1762
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEE 746
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1058-1767 |
5.90e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1058 QIIQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAME----REKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALI 1133
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREivksYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1134 KLQDENKKLSTRFESSGQ---DMFRETIQNLSRIIREK--------------DIEIDALSQKCQTLLAVLQTSSTGNEAG 1196
Cdd:TIGR00606 280 QMEKDNSELELKMEKVFQgtdEQLNDLYHNHQRTVREKerelvdcqreleklNKERRLLNQEKTELLVEQGRLQLQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1197 GVNSNQFEELLQ------ERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQVDYTGLI 1270
Cdd:TIGR00606 360 QEHIRARDSLIQslatrlELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLG 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1271 QSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASLLTPQS-AECLRASKSEVLSESSELLQQELE 1349
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSlTETLKKEVKSLQNEKADLDRKLRK 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1350 ELRKsLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQL------KEKQDVLQKLLKEKDLLIKAKSD--- 1420
Cdd:TIGR00606 520 LDQE-MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKlnk 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1421 QLLSSNENFTNKVNENELLRQAVTNLKERIL------ILEMDIGKLKGENEKivetYRGKETEYQALQETNMKFSMMLRE 1494
Cdd:TIGR00606 599 ELASLEQNKNHINNELESKEEQLSSYEDKLFdvcgsqDEESDLERLKEEIEK----SSKQRAMLAGATAVYSQFITQLTD 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1495 KEFECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEF 1574
Cdd:TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1575 RSNQELERLRNHLLESEDSYtrEALAAEDREAK-LRKKVTVLEEKLVSSSNAMENASHQAS-VQVESLQEQLNVVSKQRD 1652
Cdd:TIGR00606 755 KVNRDIQRLKNDIEEQETLL--GTIMPEEESAKvCLTDVTIMERFQMELKDVERKIAQQAAkLQGSDLDRTVQQVNQEKQ 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1653 ETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLiAEWKKNAENLEGKVISLQECL----DEANAA 1728
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL-QRRQQFEEQLVELSTEVQSLIreikDAKEQD 911
|
730 740 750
....*....|....*....|....*....|....*....
gi 1012519614 1729 LDSASRLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKL 1767
Cdd:TIGR00606 912 SPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
446-629 |
6.29e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 446 KLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEI----EELDRQNQEATKHMILIKDQLSKQQ 521
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdklqAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 522 NEGDSI------------------ISKLKQDLNDEKKRVHQLEDDKmditKELDVQKEKLiqsEVALNDLHLTKQKLEDK 583
Cdd:COG3883 97 RSGGSVsyldvllgsesfsdfldrLSALSKIADADADLLEELKADK----AELEAKKAEL---EAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1012519614 584 VENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQS 629
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
412-626 |
6.40e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 412 LAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISldsELHDLRLNLEAKEQELNQSISEket 491
Cdd:PHA02562 165 LSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIA---RKQNKYDELVEEAKTIKAEIEE--- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 492 LIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLK------------QDLNDEKKRVHQLEDDKMDITKEL--- 556
Cdd:PHA02562 239 LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLekl 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 557 DVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNEL 626
Cdd:PHA02562 319 DTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
47-705 |
6.48e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 47 ELPDSRTKEIEAIHAILRSENERLKKLCTDLEEKHEASEIQIKQQSTsyrNQLQQKEVEISHLKARQIALQDQLLKLQSA 126
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG---DRLEQLEREIERLERELEERERRRARLEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 127 AQSVpsGAGVPATTAsssfaygishhpsafhdddmDFGDIIS-SQQEINRLSNEVSRLESEVghWRHIAQTSKAqgtdns 205
Cdd:COG4913 368 LAAL--GLPLPASAE--------------------EFAALRAeAAALLEALEEELEALEEAL--AEAEAALRDL------ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 206 dQSEICKLQNIIKELKQNRSQeIDDHQHEMsvlqnahqqkLTEIsrrhREELSDYEERIEELENLLQQGGS-----GVIE 280
Cdd:COG4913 418 -RRELRELEAEIASLERRKSN-IPARLLAL----------RDAL----AEALGLDEAELPFVGELIEVRPEeerwrGAIE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 281 T-----------------DLSKIYEMQKTIQVLQIEKVEST-KKMEQLEDKIKDINKKLSSAEND-RDILRRE------- 334
Cdd:COG4913 482 RvlggfaltllvppehyaAALRWVNRLHLRGRLVYERVRTGlPDPERPRLDPDSLAGKLDFKPHPfRAWLEAElgrrfdy 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 335 -----QEQLNVEKRQIMEECEnlklecsklqpsaVKQSDTMTEK--------ERILAQSAsveevfrlQQALSDAENEIm 401
Cdd:COG4913 562 vcvdsPEELRRHPRAITRAGQ-------------VKGNGTRHEKddrrrirsRYVLGFDN--------RAKLAALEAEL- 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 402 rlsslnqdNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMsLLKLNNEYEVIKSTATRDISLDSELHDLRLN---LEAK 478
Cdd:COG4913 620 --------AELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAEREIAELEAELERLDASsddLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 479 EQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDE-KKRVHQLEDDKmdITKELD 557
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALlEERFAAALGDA--VERELR 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 558 VQKEKLIQSEVALndlhltKQKLEDKVENLVDQLNK---SQESNVSIQKENLE--LKEHIRQNEEELSRIRNELMQSLNQ 632
Cdd:COG4913 769 ENLEERIDALRAR------LNRAEEELERAMRAFNRewpAETADLDADLESLPeyLALLDRLEEDGLPEYEERFKELLNE 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 633 DSNsNFKDTLLKEREAEVRNLKQNlseLEQLNENLKKVAFDvkmENEKLVLACEDVRH--------QLEECLAGNNQLSL 704
Cdd:COG4913 843 NSI-EFVADLLSKLRRAIREIKER---IDPLNDSLKRIPFG---PGRYLRLEARPRPDpevrefrqELRAVTSGASLFDE 915
|
.
gi 1012519614 705 E 705
Cdd:COG4913 916 E 916
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1631-1771 |
6.70e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1631 HQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEkAMYSAELEKQKQLIAEWKKNAEN 1710
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 1711 LEGKVISLQECLDEANAALDsasRLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKLMSLA 1771
Cdd:COG1196 314 LEERLEELEEELAELEEELE---ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
|
| bHLHzip_Myc |
cd11400 |
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the Myc family; The Myc family is a ... |
63-122 |
6.71e-03 |
|
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the Myc family; The Myc family is a member of the bHLHzip family of transcription factors that play important roles in the control of normal cell proliferation, growth, survival and differentiation. All Myc isoforms contain two independently functioning polypeptide chain regions: N-terminal transactivating residues and a C-terminal bHLHzip segment. The bHLHzip family of bHLH transcription factors are characterized by a highly conserved N-terminal basic region that may bind DNA at a consensus hexanucleotide sequence known as the E-box (CANNTG) followed by HLH and leucine zipper motifs that may interact with other proteins to form homo- and heterodimers. Myc heterodimerizes with Max enabling specific binding to E-box DNA sequences in the promoters of target genes. The Myc proto-oncoprotein family includes at least five different functional members: c-, N-, L-, S- and B-Myc (which is lacking the bHLH domain).
Pssm-ID: 381406 [Multi-domain] Cd Length: 80 Bit Score: 37.53 E-value: 6.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 63 LRSENERLKKLCTDLEEKHEASEIQIKQQSTSYRNQLQQKEVEISHLKARQIALQDQLLK 122
Cdd:cd11400 16 LKNSFEKLRDLVPELADNEKASKVVILKKATEYIKQLQQEEKKLEKEKDKLKARNEQLRK 75
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-656 |
6.87e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 370 MTEKERILAQSASVEEVF----RLQQALSDAENEIMRLSSLNQdnsLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLL 445
Cdd:COG4913 217 MLEEPDTFEAADALVEHFddleRAHEALEDAREQIELLEPIRE---LAERYAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 446 KlnneyevikstatrdisldSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQnqeatkhmilikdqlsKQQNEGD 525
Cdd:COG4913 294 E-------------------AELEELRAELARLEAELERLEARLDALREELDELEAQ----------------IRGNGGD 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 526 siisklkqdlndekkRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQEsnvsiqken 605
Cdd:COG4913 339 ---------------RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE--------- 394
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1012519614 606 lELKEHIRQNEEELSRIRNELMQSLNQdsnsnfkdtlLKEREAEVRNLKQN 656
Cdd:COG4913 395 -ALEEELEALEEALAEAEAALRDLRRE----------LRELEAEIASLERR 434
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1602-1770 |
7.48e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1602 EDREAKLRKKVTVLEEKLVS--SSNAMENASHQASV---QVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANL- 1675
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLllqQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELl 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1676 -----QMVLEHFQQ------EEKAMYS----------AELEKQKQLI-AEWKKNAENLEGKVISLQECLDEANAALDSAS 1733
Cdd:COG3206 261 qspviQQLRAQLAEleaelaELSARYTpnhpdvialrAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLE 340
|
170 180 190
....*....|....*....|....*....|....*..
gi 1012519614 1734 RLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKLMSL 1770
Cdd:COG3206 341 ARLAELPELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
719-1281 |
8.08e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 719 EIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQkkdmEIAELKKNIEQMDTDHKETKDVLSSS 798
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQ----ESGNLDDQLQKLLADLHKREKELSLE 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 799 LEEQKQLTQLINKKEIFIEKLKErssklqeELDKYSQALRKNEILRQTIeeKDRSLGSMKEEnnhlqeelerlreeqsRT 878
Cdd:pfam15921 397 KEQNKRLWDRDTGNSITIDHLRR-------ELDDRNMEVQRLEALLKAM--KSECQGQMERQ----------------MA 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 879 APVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNA------T 952
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSrvdlklQ 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 953 HTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVqslnIENGSEKHDLSKAETERLVKGIKERELEI- 1031
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL----VGQHGRTAGAMQVEKAQLEKEINDRRLELq 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1032 --KLLNEKNISLTKQIDQlskdevgkltqiiQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTR 1109
Cdd:pfam15921 608 efKILKDKKDAKIRELEA-------------RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1110 ENSHLKTEYH---KMMDIVAAK-----EAALIKLQDENKKLSTRFESSGQDMfrETIQNLSRIIREKDIEIDALSQKCQT 1181
Cdd:pfam15921 675 DYEVLKRNFRnksEEMETTTNKlkmqlKSAQSELEQTRNTLKSMEGSDGHAM--KVAMGMQKQITAKRGQIDALQSKIQF 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012519614 1182 LlavlqtsstgnEAGGVNSNQFEELL-QERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQaqvlVDSDNNS 1260
Cdd:pfam15921 753 L-----------EEAMTNANKEKHFLkEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME----VALDKAS 817
|
570 580
....*....|....*....|.
gi 1012519614 1261 KLQVDYTGLIQSYEQNETKLK 1281
Cdd:pfam15921 818 LQFAECQDIIQRQEQESVRLK 838
|
|
|