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Conserved domains on  [gi|1012162929|gb|AMS02143|]
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DNA methylase [Mycobacterium phage Xeno]

Protein Classification

DNA-methyltransferase( domain architecture ID 10002921)

DNA methyltransferase catalyzes specific methylation on cytosine or adenine on both strands and protects the DNA from cleavage by endonuclease; belongs to the class I SAM-dependent methyltransferase superfamily

CATH:  2.20.25.110
SCOP:  3000118

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
45-484 5.62e-41

DNA modification methylase [Replication, recombination and repair];


:

Pssm-ID: 440623  Cd Length: 236  Bit Score: 146.99  E-value: 5.62e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  45 TLYHGDCLHVLAELPDRSVDAVVCDPPYgleFMGKEWDapwrktsashararerraaelddpvkgkYIRAGVNAYEAGKP 124
Cdd:COG0863     1 RLICGDCLEVLKELPDESVDLIVTDPPY---NLGKKYG----------------------------LGRREIGNELSFEE 49

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 125 FQQWCAQWAAECLRVLKPGGHLLAFGGSRTWHRLAAAIEDAGFEVRDSIAWLYGSGFPKSldvskaidkaagaerevvgp 204
Cdd:COG0863    50 YLEFLREWLAECYRVLKPGGSLYVNIGDRYISRLIAALRDAGFKLRNEIIWRKPNGVPGP-------------------- 109

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 205 krypdgkthieawpggenghegwqrpgapkgeargarnltapatsdaakwqgWGTALKPAFEPIVVARKplagtvaanvl 284
Cdd:COG0863   110 ----------------------------------------------------SKRRFRNSHEYILWFTK----------- 126

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 285 ehgtgalnidacripaGQDYRDKCASVVgldsnrngaaygewtgartdsAHEEGRWPTNVVlddaqaaeldrqsghsrsr 364
Cdd:COG0863   127 ----------------GKKYTFNVDAVK---------------------SIEDGRNPSDVW------------------- 150

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 365 inaptdrtpgvatnfamtkggttgyedeggasrFFPVfryeakapgaeRPSANGVAHPTVKPLDLMRWLVRLVTPPNGVV 444
Cdd:COG0863   151 ---------------------------------DIPG-----------VTPKERKGHPTQKPVELLERLILASSNPGDIV 186

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1012162929 445 LDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARLSK 484
Cdd:COG0863   187 LDPFAGSGTTLVAAERLGRRFIGIEIDPEYVEVARRRLEE 226
 
Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
45-484 5.62e-41

DNA modification methylase [Replication, recombination and repair];


Pssm-ID: 440623  Cd Length: 236  Bit Score: 146.99  E-value: 5.62e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  45 TLYHGDCLHVLAELPDRSVDAVVCDPPYgleFMGKEWDapwrktsashararerraaelddpvkgkYIRAGVNAYEAGKP 124
Cdd:COG0863     1 RLICGDCLEVLKELPDESVDLIVTDPPY---NLGKKYG----------------------------LGRREIGNELSFEE 49

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 125 FQQWCAQWAAECLRVLKPGGHLLAFGGSRTWHRLAAAIEDAGFEVRDSIAWLYGSGFPKSldvskaidkaagaerevvgp 204
Cdd:COG0863    50 YLEFLREWLAECYRVLKPGGSLYVNIGDRYISRLIAALRDAGFKLRNEIIWRKPNGVPGP-------------------- 109

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 205 krypdgkthieawpggenghegwqrpgapkgeargarnltapatsdaakwqgWGTALKPAFEPIVVARKplagtvaanvl 284
Cdd:COG0863   110 ----------------------------------------------------SKRRFRNSHEYILWFTK----------- 126

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 285 ehgtgalnidacripaGQDYRDKCASVVgldsnrngaaygewtgartdsAHEEGRWPTNVVlddaqaaeldrqsghsrsr 364
Cdd:COG0863   127 ----------------GKKYTFNVDAVK---------------------SIEDGRNPSDVW------------------- 150

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 365 inaptdrtpgvatnfamtkggttgyedeggasrFFPVfryeakapgaeRPSANGVAHPTVKPLDLMRWLVRLVTPPNGVV 444
Cdd:COG0863   151 ---------------------------------DIPG-----------VTPKERKGHPTQKPVELLERLILASSNPGDIV 186

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1012162929 445 LDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARLSK 484
Cdd:COG0863   187 LDPFAGSGTTLVAAERLGRRFIGIEIDPEYVEVARRRLEE 226
N6_N4_Mtase pfam01555
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 ...
 63-479 8.44e-19

DNA methylase; Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.


Pssm-ID: 396230 [Multi-domain]  Cd Length: 221  Bit Score: 85.14  E-value: 8.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  63 VDAVVCDPPYGLEFMGKEWDAPWrktsashararerraaelddpvkgkyiragvnAYEAgkpFQQWCAQWAAECLRVLKP 142
Cdd:pfam01555   1 VDLIVTDPPYNLGKDYGQWDDKD--------------------------------SIEE---YLEWLEEWLKEVRRVLKP 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 143 GGHLLAFGG-SRTWHRLAAAIEDAG-FEVRDSIAWLYGSGFPKSldvskaidkaagaerevvgPKRYpdgkthieawpgg 220
Cdd:pfam01555  46 GGSIFINIGdSNIKSLKALALEILGiFKLLNDIIWRKPNGMPNS-------------------NGER------------- 93

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 221 enghegwqrpgapkgeargarnltapatsdaakwqgwgtaLKPAFEPIVVARKPLAgtvaanvlehgTGALNIDACRIPa 300
Cdd:pfam01555  94 ----------------------------------------FTPAHEYILWFSKTKK-----------YKTFNYDAIKVP- 121

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 301 gqdyrdkcasvvgldsnrngaaYGEWTGARTDSAHEEGRWPTNVVLddaqaaeldrqsghsrsrinaptdrtpgvatnfa 380
Cdd:pfam01555 122 ----------------------YDEKDKLKKRGSEPNGKPIGDVWD---------------------------------- 145

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 381 mtkggttgyedeggasrfFPVFRYEAKAPGAERpsangvAHPTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIH 460
Cdd:pfam01555 146 ------------------FSRVQPSEKESGGNG------KHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKE 201

                         410
                  ....*....|....*....
gi 1012162929 461 EHKRCITIEREADYLPLIV 479
Cdd:pfam01555 202 LGRNFIGIEIEEEYVEIAK 220
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
38-146 1.72e-10

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 61.66  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  38 YYQDDQVTLYHGDCLHVLAELPDRSVDAVVCDPPYGLefmGKEWDA---PWRKTSashararerraaelddpvkgkyira 114
Cdd:PRK11524    3 RFGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNI---GKNFDGlieAWKEDL------------------------- 54

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1012162929 115 gvnayeagkpFQQWCAQWAAECLRVLKPGGHL 146
Cdd:PRK11524   55 ----------FIDWLYEWIDECHRVLKKQGTM 76
 
Name Accession Description Interval E-value
YhdJ COG0863
DNA modification methylase [Replication, recombination and repair];
45-484 5.62e-41

DNA modification methylase [Replication, recombination and repair];


Pssm-ID: 440623  Cd Length: 236  Bit Score: 146.99  E-value: 5.62e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  45 TLYHGDCLHVLAELPDRSVDAVVCDPPYgleFMGKEWDapwrktsashararerraaelddpvkgkYIRAGVNAYEAGKP 124
Cdd:COG0863     1 RLICGDCLEVLKELPDESVDLIVTDPPY---NLGKKYG----------------------------LGRREIGNELSFEE 49

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 125 FQQWCAQWAAECLRVLKPGGHLLAFGGSRTWHRLAAAIEDAGFEVRDSIAWLYGSGFPKSldvskaidkaagaerevvgp 204
Cdd:COG0863    50 YLEFLREWLAECYRVLKPGGSLYVNIGDRYISRLIAALRDAGFKLRNEIIWRKPNGVPGP-------------------- 109

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 205 krypdgkthieawpggenghegwqrpgapkgeargarnltapatsdaakwqgWGTALKPAFEPIVVARKplagtvaanvl 284
Cdd:COG0863   110 ----------------------------------------------------SKRRFRNSHEYILWFTK----------- 126

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 285 ehgtgalnidacripaGQDYRDKCASVVgldsnrngaaygewtgartdsAHEEGRWPTNVVlddaqaaeldrqsghsrsr 364
Cdd:COG0863   127 ----------------GKKYTFNVDAVK---------------------SIEDGRNPSDVW------------------- 150

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 365 inaptdrtpgvatnfamtkggttgyedeggasrFFPVfryeakapgaeRPSANGVAHPTVKPLDLMRWLVRLVTPPNGVV 444
Cdd:COG0863   151 ---------------------------------DIPG-----------VTPKERKGHPTQKPVELLERLILASSNPGDIV 186

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1012162929 445 LDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARLSK 484
Cdd:COG0863   187 LDPFAGSGTTLVAAERLGRRFIGIEIDPEYVEVARRRLEE 226
N6_N4_Mtase pfam01555
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 ...
 63-479 8.44e-19

DNA methylase; Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.


Pssm-ID: 396230 [Multi-domain]  Cd Length: 221  Bit Score: 85.14  E-value: 8.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  63 VDAVVCDPPYGLEFMGKEWDAPWrktsashararerraaelddpvkgkyiragvnAYEAgkpFQQWCAQWAAECLRVLKP 142
Cdd:pfam01555   1 VDLIVTDPPYNLGKDYGQWDDKD--------------------------------SIEE---YLEWLEEWLKEVRRVLKP 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 143 GGHLLAFGG-SRTWHRLAAAIEDAG-FEVRDSIAWLYGSGFPKSldvskaidkaagaerevvgPKRYpdgkthieawpgg 220
Cdd:pfam01555  46 GGSIFINIGdSNIKSLKALALEILGiFKLLNDIIWRKPNGMPNS-------------------NGER------------- 93

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 221 enghegwqrpgapkgeargarnltapatsdaakwqgwgtaLKPAFEPIVVARKPLAgtvaanvlehgTGALNIDACRIPa 300
Cdd:pfam01555  94 ----------------------------------------FTPAHEYILWFSKTKK-----------YKTFNYDAIKVP- 121

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 301 gqdyrdkcasvvgldsnrngaaYGEWTGARTDSAHEEGRWPTNVVLddaqaaeldrqsghsrsrinaptdrtpgvatnfa 380
Cdd:pfam01555 122 ----------------------YDEKDKLKKRGSEPNGKPIGDVWD---------------------------------- 145

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929 381 mtkggttgyedeggasrfFPVFRYEAKAPGAERpsangvAHPTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIH 460
Cdd:pfam01555 146 ------------------FSRVQPSEKESGGNG------KHPTQKPEALLERLILASTNPGDIVLDPFAGSGTTGAAAKE 201

                         410
                  ....*....|....*....
gi 1012162929 461 EHKRCITIEREADYLPLIV 479
Cdd:pfam01555 202 LGRNFIGIEIEEEYVEIAK 220
Mod COG2189
Adenine specific DNA methylase Mod [Replication, recombination and repair];
422-487 4.00e-11

Adenine specific DNA methylase Mod [Replication, recombination and repair];


Pssm-ID: 441792 [Multi-domain]  Cd Length: 491  Bit Score: 65.18  E-value: 4.00e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1012162929 422 PTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEAcIHE-------HKRCITIEREADYLPLIVARLSKPIE 487
Cdd:COG2189   302 DTPKPEKLLKRIIEIATNPGDLVLDFFAGSGTTAHA-VMKlnaedggNRRFILVQLGEYADTVTKERLRRVID 373
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
38-146 1.72e-10

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 61.66  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  38 YYQDDQVTLYHGDCLHVLAELPDRSVDAVVCDPPYGLefmGKEWDA---PWRKTSashararerraaelddpvkgkyira 114
Cdd:PRK11524    3 RFGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNI---GKNFDGlieAWKEDL------------------------- 54

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1012162929 115 gvnayeagkpFQQWCAQWAAECLRVLKPGGHL 146
Cdd:PRK11524   55 ----------FIDWLYEWIDECHRVLKKQGTM 76
PRK13699 PRK13699
putative methylase; Provisional
 421-474 4.74e-08

putative methylase; Provisional


Pssm-ID: 184255  Cd Length: 227  Bit Score: 53.68  E-value: 4.74e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1012162929 421 HPTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIHEHKRCITIEREADY 474
Cdd:PRK13699  144 HPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQY 197
PRK11524 PRK11524
adenine-specific DNA-methyltransferase;
421-482 5.03e-08

adenine-specific DNA-methyltransferase;


Pssm-ID: 183177 [Multi-domain]  Cd Length: 284  Bit Score: 54.34  E-value: 5.03e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012162929 421 HPTVKPLDLMRWLVRLVTPPNGVVLDPFAGSGTTAEACIHEHKRCITIEREADYLPLIVARL 482
Cdd:PRK11524  189 HPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
 30-173 8.47e-08

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 51.87  E-value: 8.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  30 EGRRMNHPYYQDDQVTLYHGDCLHVlaELPDRSVDAVVCDPPYGlefmgkewdapwRKTSASHararerraAELDDPVKG 109
Cdd:COG1041    62 EGARENLEHYGYEDADVIRGDARDL--PLADESVDAIVTDPPYG------------RSSKISG--------EELLELYEK 119

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1012162929 110 kyiragvnayeagkpFqqwcaqwAAECLRVLKPGGHlLAFGGSRTWHRLaaaIEDAGFEVRDSI 173
Cdd:COG1041   120 ---------------A-------LEEAARVLKPGGR-VVIVTPRDIDEL---LEEAGFKVLERH 157
PRK13699 PRK13699
putative methylase; Provisional
 49-169 2.30e-04

putative methylase; Provisional


Pssm-ID: 184255  Cd Length: 227  Bit Score: 42.51  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012162929  49 GDCLHVLAELPDRSVDAVVCDPPYGLEFMGKEwdapwrktsashararerraaelddpvkGKYIragvnayeAGKPFQQW 128
Cdd:PRK13699    7 GNCIDVMARFPDNAVDFILTDPPYLVGFRDRQ----------------------------GRTI--------AGDKTDEW 50

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1012162929 129 CAQWAAECLRVLKPGGHLLAFGGSRTWHRLAAAIEDAGFEV 169
Cdd:PRK13699   51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSV 91
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
 421-459 1.04e-03

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 39.93  E-value: 1.04e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1012162929 421 HPTVKPLDLMRWLVRL-VTPPNGVVLDPFAGSGTTA-EACI 459
Cdd:COG1041     6 YPGSLDPRLARALVNLaGAKEGDTVLDPFCGTGTILiEAGL 46
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 130-168 1.21e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 39.21  E-value: 1.21e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1012162929 130 AQWAAECLRVLKPGGHLLAFGGSR-TWHRLAAAIEDAGFE 168
Cdd:COG2226   104 ERALAEIARVLKPGGRLVVVDFSPpDLAELEELLAEAGFE 143
COG2521 COG2521
Predicted archaeal methyltransferase [General function prediction only];
32-76 1.37e-03

Predicted archaeal methyltransferase [General function prediction only];


Pssm-ID: 442011 [Multi-domain]  Cd Length: 285  Bit Score: 40.66  E-value: 1.37e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1012162929  32 RRMNhPY---YQDDQVTLYHGDCLHVLAELPDRSVDAVVCDPP--------YGLEF 76
Cdd:COG2521   171 AELN-PWsreLANERIKIILGDASEVIKTFPDESFDAIIHDPPrfslagelYSLEF 225
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 41-72 1.38e-03

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 40.51  E-value: 1.38e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1012162929  41 DDQVTLYHGDCLHVLAELPDRSVDAVVCDPPY 72
Cdd:COG4123    87 EDRITVIHGDLKEFAAELPPGSFDLVVSNPPY 118
RsmD COG0742
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 41-79 9.48e-03

16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440505 [Multi-domain]  Cd Length: 183  Bit Score: 37.37  E-value: 9.48e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1012162929  41 DDQVTLYHGDCLHVLAELPDRSVDAVVCDPPYGLEFMGK 79
Cdd:COG0742    90 EDRARVIRGDALRFLKRLAGEPFDLVFLDPPYAKGLLEK 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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