|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
44-281 |
5.91e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 124.35 E-value: 5.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 44 PTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGM 123
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 124 VKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAI 203
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1008899292 204 LSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAID 281
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
211-400 |
6.51e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 121.65 E-value: 6.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 211 ERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYN 290
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 291 KGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYK 370
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180 190
....*....|....*....|....*....|
gi 1008899292 371 GAIADYDQTIMLDPKDGAAYSNRGYAKQML 400
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALA 191
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
74-304 |
1.23e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 120.88 E-value: 1.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 74 LAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYN 153
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 154 EIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESY 233
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1008899292 234 DEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADA 304
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
176-416 |
4.36e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 119.34 E-value: 4.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 176 IDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYN 255
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 256 NRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDY 335
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 336 KSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLE 415
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
.
gi 1008899292 416 L 416
Cdd:COG0457 241 Y 241
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
244-428 |
1.02e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.57 E-value: 1.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 244 IKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFF 323
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 324 KRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDN 403
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180
....*....|....*....|....*
gi 1008899292 404 TAACIDWKKGLELGDTDAADYITQY 428
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGE 185
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
144-378 |
1.56e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 117.80 E-value: 1.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 144 IDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSR 223
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 224 GDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYAD 303
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 304 AVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQ 378
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
50-282 |
4.66e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 106.35 E-value: 4.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 50 YYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQK 129
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 130 NYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQA 209
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 210 AERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDP 282
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
159-374 |
5.88e-26 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 104.61 E-value: 5.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 159 KKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERsPNNADIYYSRGDSHRYMESYDEAIS 238
Cdd:COG4785 16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 239 DYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTD 318
Cdd:COG4785 95 DFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 319 PDGFFKRGNAKLNLeDYKSAITDYNETikldvkYGNAYNNRGVAKRYLSDYKGAIA 374
Cdd:COG4785 175 PERALWLYLAERKL-DPEKALALLLED------WATAYLLQGDTEEARELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
87-349 |
1.00e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.58 E-value: 1.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 87 RGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYK 166
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 167 GALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKL 246
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 247 DPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPtDPDGFFKRG 326
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALA 252
|
250 260
....*....|....*....|...
gi 1008899292 327 NAKLNLEDYKSAITDYNETIKLD 349
Cdd:COG2956 253 DLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
28-218 |
3.11e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.55 E-value: 3.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG0457 23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 108 LILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYY 187
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
170 180 190
....*....|....*....|....*....|.
gi 1008899292 188 NSGLTQNQMEAYKDAILSFNQAAERSPNNAD 218
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-248 |
4.94e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 103.66 E-value: 4.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 33 VKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNP 112
Cdd:COG2956 28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 113 NSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLT 192
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 193 QNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDP 248
Cdd:COG2956 188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
163-406 |
6.96e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 100.19 E-value: 6.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 163 EDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSI 242
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 243 AIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGF 322
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 323 FKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGD 402
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261
|
....
gi 1008899292 403 NTAA 406
Cdd:COG2956 262 EAAL 265
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
235-405 |
8.89e-24 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 98.83 E-value: 8.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 235 EAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLIL------AIDPKYANSYYNKGLANDKLNNYADAVECY 308
Cdd:COG4785 17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGVAYDSLGDYDLAIADF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 309 DSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGA 388
Cdd:COG4785 97 DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
170
....*....|....*..
gi 1008899292 389 AYSNRGYAKQMLGDNTA 405
Cdd:COG4785 177 RALWLYLAERKLDPEKA 193
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
115-349 |
7.79e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 7.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 115 SAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQN 194
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 195 QMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADA 274
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 275 NLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLD 349
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
82-294 |
1.28e-22 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 95.37 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 82 EAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQkGVLIDPKDPDFYNEIGICKKR 161
Cdd:COG4785 7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERID-RALALPDLAQLYYERGVAYDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 162 LEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYS 241
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1008899292 242 IAIKLDPKFLDAYNNRGIAkYGKKDYEGDIAD------ANLILAIDPKYANSYYNKGLA 294
Cdd:COG4785 166 KALELDPNDPERALWLYLA-ERKLDPEKALALlledwaTAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
46-257 |
1.69e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 100.07 E-value: 1.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 46 DADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRA--YQSLEQYASAIKEYNAYLILNPNSSAGYYNRGM 123
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALaeAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 124 VKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAI 203
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1008899292 204 LSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNR 257
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
44-203 |
2.56e-22 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 94.60 E-value: 2.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 44 PTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGM 123
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 124 VKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLeDYKGALVEFKKAIDlapadySAYYNSGLTQNQMEAYKDAI 203
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDWA------TAYLLQGDTEEARELFKLAL 222
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
246-428 |
8.46e-22 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 93.06 E-value: 8.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 246 LDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLsPTDPDGFFKR 325
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 326 GNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTA 405
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
170 180
....*....|....*....|...
gi 1008899292 406 ACIDWKKGLELGDTDAADYITQY 428
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLY 182
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-247 |
1.96e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 33 VKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNP 112
Cdd:COG2956 62 IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 113 NSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLT 192
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 193 QNQMEAYKDAILSFNQAAERSPNNADIYYsRGDSHRYMESYDEAISDYSIAIKLD 247
Cdd:COG2956 222 YEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
168-428 |
7.13e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 7.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 168 ALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQA-------AERSPNNADIYYSRGDSHRYMESYDEAISDY 240
Cdd:COG3914 22 AAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAageaaaaAAALLLLAALLELAALLLQALGRYEEALALY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 241 SIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPD 320
Cdd:COG3914 102 RRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 321 gffkrgnaklnledyksaitdynetikldvkygnAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQML 400
Cdd:COG3914 182 ----------------------------------ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQA 227
|
250 260 270
....*....|....*....|....*....|
gi 1008899292 401 GD--NTAACIDWKKGLELGDTDAADYITQY 428
Cdd:COG3914 228 CDweVYDRFEELLAALARGPSELSPFALLY 257
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
28-389 |
1.07e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.77 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 108 LILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYY 187
Cdd:TIGR02917 254 LKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 188 NSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDY 267
Cdd:TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 268 EGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIK 347
Cdd:TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1008899292 348 LDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAA 389
Cdd:TIGR02917 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
68-290 |
3.05e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 3.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 68 ADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPK 147
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 148 DPDFYNEIgickKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSH 227
Cdd:COG3914 81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 228 RYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYN 290
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
46-182 |
3.11e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.40 E-value: 3.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 46 DADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVK 125
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1008899292 126 RLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPAD 182
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
28-419 |
4.39e-20 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 92.74 E-value: 4.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPtDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:TIGR00990 142 DFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 108 LI---LNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVlidPKDPDFYNEIGICKKRLEdykgalvefkkaidlaPADYs 184
Cdd:TIGR00990 221 CIidgFRNEQSAQAVERLLKKFAESKAKEILETKPENL---PSVTFVGNYLQSFRPKPR----------------PAGL- 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 185 ayynsgltQNQMEAYKDAILSFNQAAERSPNnadiyySRGDshrymESYDEAISDYSIAI---KLDPKFLDAYNNRGIAK 261
Cdd:TIGR00990 281 --------EDSNELDEETGNGQLQLGLKSPE------SKAD-----ESYEEAARAFEKALdlgKLGEKEAIALNLRGTFK 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 262 YGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITD 341
Cdd:TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1008899292 342 YNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSnrgYAKQMLGDNTaaciDWKKGLELGDT 419
Cdd:TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN---YYGELLLDQN----KFDEAIEKFDT 492
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
186-406 |
5.88e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.02 E-value: 5.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 186 YYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKK 265
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 266 DYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNET 345
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1008899292 346 IKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAA 406
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
81-216 |
2.37e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.09 E-value: 2.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 81 VEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKK 160
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 161 RLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNN 216
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
118-250 |
3.93e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 83.32 E-value: 3.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 118 YYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQME 197
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 198 AYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKF 250
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
44-193 |
7.15e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 84.97 E-value: 7.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 44 PTDADAYYKRGSANLNLRNYKLALADFNKAL------AINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAG 117
Cdd:COG4785 30 LFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 118 YYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQ 193
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE 185
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-416 |
1.70e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 88.22 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 42 KTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSA----- 116
Cdd:TIGR02917 51 KDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAellal 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 117 ---GYYNRGMVKRLQKNYTSALEdyqkgvlIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQ 193
Cdd:TIGR02917 131 rglAYLGLGQLELAQKSYEQALA-------IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 194 NQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIAD 273
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 274 ANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYG 353
Cdd:TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 354 NAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLEL 416
Cdd:TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
6-152 |
2.33e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 87.36 E-value: 2.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 6 LIFLICPLFSRAQTTTKNSDsvkFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAIL 85
Cdd:COG3914 74 LLLLAALLELAALLLQALGR---YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1008899292 86 DRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFY 152
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
201-320 |
1.65e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.51 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 201 DAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAI 280
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1008899292 281 DPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPD 320
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
220-416 |
1.88e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.08 E-value: 1.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 220 YYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLN 299
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 300 NYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQT 379
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190
....*....|....*....|....*....|....*..
gi 1008899292 380 IMLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLEL 416
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
181-318 |
2.62e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 75.23 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 181 ADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIA 260
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1008899292 261 KYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTD 318
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
66-182 |
3.79e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 3.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 66 ALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLID 145
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1008899292 146 PKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPAD 182
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
152-284 |
1.78e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.92 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 152 YNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYME 231
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 232 SYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKY 284
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
28-148 |
3.32e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.15 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1008899292 108 LILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKD 148
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
217-349 |
4.24e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.76 E-value: 4.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 217 ADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLAND 296
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 297 KLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLD 349
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
285-416 |
4.72e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.76 E-value: 4.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 285 ANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKR 364
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 365 YLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLEL 416
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
33-152 |
7.40e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.81 E-value: 7.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 33 VKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNP 112
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1008899292 113 NSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFY 152
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
47-389 |
8.87e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 8.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 47 ADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILdrGRAYQSLEQ--YASAIKEYNAYLILNPNSSAGYYNRGMV 124
Cdd:TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL--GLAQLALAEnrFDEARALIDEVLTADPGNVDALLLKGDL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 125 KRLQKNYTSALEDYQKGVLIDPKDP-DFYNEIGIckkRLEdykgaLVEFKKAidlapadysayynsgltqnqmEAYKDAI 203
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNIaVLLALATI---LIE-----AGEFEEA---------------------EKHADAL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 204 LsfnqaaERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPK 283
Cdd:TIGR02917 254 L------KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 284 yaNSYYNKGLANDKLNN--YADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGV 361
Cdd:TIGR02917 328 --SHQARRLLASIQLRLgrVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
|
330 340
....*....|....*....|....*...
gi 1008899292 362 AKRYLSDYKGAIADYDQTIMLDPKDGAA 389
Cdd:TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRA 433
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
33-178 |
1.05e-14 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 72.41 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 33 VKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNP 112
Cdd:NF040959 57 VRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKP 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 113 NSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDL 178
Cdd:NF040959 137 DNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMEL 202
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
168-288 |
1.09e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 168 ALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLD 247
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1008899292 248 PKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSY 288
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
100-220 |
1.55e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.03 E-value: 1.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 100 AIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLA 179
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1008899292 180 PADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIY 220
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
28-140 |
5.90e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.71 E-value: 5.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
90 100 110
....*....|....*....|....*....|...
gi 1008899292 108 LILNPNSSAGYYNRGMVkRLQKNYTSALEDYQK 140
Cdd:COG4785 168 LELDPNDPERALWLYLA-ERKLDPEKALALLLE 199
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
303-425 |
8.46e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.11 E-value: 8.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 303 DAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIML 382
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1008899292 383 DPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLELGDTDAADYI 425
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-422 |
3.15e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 3.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 42 KTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNR 121
Cdd:TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 122 GMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKD 201
Cdd:TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 202 AILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYnnrgIAKYGKKDYEGDIADANLILA-I 280
Cdd:TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ----IGLAQLLLAAKRTESAKKIAKsL 695
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 281 DPKYANSYYNKGLAND---KLNNYADAVECYDSFIKLSPTDpDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKygNAYN 357
Cdd:TIGR02917 696 QKQHPKAALGFELEGDlylRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DAVL 772
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1008899292 358 NRGVAKRYL--SDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLgDNTAACIDWKKGLELGDTDAA 422
Cdd:TIGR02917 773 RTALAELYLaqKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPA 838
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
28-153 |
1.97e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 1.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1008899292 108 LILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYN 153
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
271-390 |
2.28e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.87 E-value: 2.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 271 IADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDV 350
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1008899292 351 KYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAY 390
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
251-386 |
3.39e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 3.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 251 LDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKL 330
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 331 NLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKD 386
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
134-249 |
2.55e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 2.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 134 ALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERS 213
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*.
gi 1008899292 214 PNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPK 249
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
28-121 |
3.59e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.01 E-value: 3.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
90
....*....|....
gi 1008899292 108 LILNPNSSAGYYNR 121
Cdd:COG3914 207 LELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
32-256 |
4.92e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.72 E-value: 4.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 32 SVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILN 111
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 112 PNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDP----------------KDPDFYNEI------------------GI 157
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPdnteaqiglaqlllaaKRTESAKKIakslqkqhpkaalgfeleGD 711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 158 CKKRLEDYKGALVEFKKAIDLAPADYSA-YYNSGLTQNQMEAykDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEA 236
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAiKLHRALLASGNTA--EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789
|
250 260
....*....|....*....|
gi 1008899292 237 ISDYSIAIKLDPKFLDAYNN 256
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNN 809
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
46-180 |
4.93e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 4.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 46 DADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVK 125
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 126 RLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAP 180
Cdd:COG5010 99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
58-147 |
7.63e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 7.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 58 LNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIkEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALED 137
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 1008899292 138 YQKGVLIDPK 147
Cdd:COG3063 82 LERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
161-252 |
1.03e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 161 RLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAIlSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDY 240
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
90
....*....|..
gi 1008899292 241 SIAIKLDPKFLD 252
Cdd:COG3063 83 ERALELDPSALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
28-127 |
1.18e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
90 100
....*....|....*....|
gi 1008899292 108 LILNPNSSAGYYNRGMVKRL 127
Cdd:COG4235 112 LALLPADAPARLLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
175-316 |
3.44e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 175 AIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAY 254
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 255 NNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSP 316
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
219-316 |
3.67e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 3.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 219 IYYSRGDshrymesYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIAdANLILAIDPKYANSYYNKGLANDKL 298
Cdd:COG3063 1 LYLKLGD-------LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....*...
gi 1008899292 299 NNYADAVECYDSFIKLSP 316
Cdd:COG3063 73 GDYDEALAYLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
90-183 |
4.87e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 4.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 90 AYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEdYQKGVLIDPKDPDFYNEIGICKKRLEDYKGAL 169
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 1008899292 170 VEFKKAIDLAPADY 183
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
63-214 |
5.73e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 5.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 63 YKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGV 142
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 143 LIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSP 214
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
29-171 |
8.95e-10 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 59.80 E-value: 8.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 29 FAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAikeynayl 108
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA-------- 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 109 ilnpnssagyynrgmvkrlqknyTSALEdyqKGVLIDPKDPDFYNEIGICKKRLEDYKGALVE 171
Cdd:PLN03088 90 -----------------------KAALE---KGASLAPGDSRFTKLIKECDEKIAEEEKDLVQ 126
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
44-249 |
1.57e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.00 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 44 PTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGM 123
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 124 VKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAI---DLAPADYSAYYNSGLTQNQ----M 196
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKknfPEAPDVYNYYGELLLDQNKfdeaI 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 197 EAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPK 249
Cdd:TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
106-248 |
2.00e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 2.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 106 AYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSA 185
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 186 YYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDP 248
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
195-283 |
4.58e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 4.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 195 QMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAIsDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADA 274
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 1008899292 275 NLILAIDPK 283
Cdd:COG3063 83 ERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
243-384 |
5.21e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 243 AIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGF 322
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 323 FKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDP 384
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
323-424 |
6.30e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 6.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 323 FKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGD 402
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100
....*....|....*....|..
gi 1008899292 403 NTAACIDWKKGLELGDTDAADY 424
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAY 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
28-113 |
1.07e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALAdFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1008899292 108 LILNPN 113
Cdd:COG3063 86 LELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
328-416 |
1.33e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 328 AKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIAdYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAAC 407
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 1008899292 408 IDWKKGLEL 416
Cdd:COG3063 80 AYLERALEL 88
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
324-416 |
1.76e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 324 KRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDN 403
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
90
....*....|...
gi 1008899292 404 TAACIDWKKGLEL 416
Cdd:COG5010 139 DEAKAALQRALGT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
143-282 |
2.20e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 143 LIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYS 222
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 223 RGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDP 282
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
89-348 |
2.76e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 55.76 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 89 RAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGA 168
Cdd:TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 169 LVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDP 248
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 249 KFLDAYNNRGIAKYGKKDYEGDIADANLILAI----DPKYAN--SYYNKGLANDK-LNNYADAVECYDSFIKLSPTDPDG 321
Cdd:TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketKPMYMNvlPLINKALALFQwKQDFIEAENLCEKALIIDPECDIA 544
|
250 260
....*....|....*....|....*..
gi 1008899292 322 FFKRGNAKLNLEDYKSAITDYNETIKL 348
Cdd:TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
28-112 |
8.00e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.50 E-value: 8.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAY 107
Cdd:COG5010 69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....*
gi 1008899292 108 LILNP 112
Cdd:COG5010 149 LGTSP 153
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
49-218 |
1.18e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 52.34 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 49 AYYKRGsanlnlrNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQ 128
Cdd:TIGR02521 40 GYLEQG-------DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 129 KNYTSALEDYQKGVLiDPKDP---DFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNsgLTQNQMEA--YKDAI 203
Cdd:TIGR02521 113 GKYEQAMQQFEQAIE-DPLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE--LAELYYLRgqYKDAR 189
|
170
....*....|....*
gi 1008899292 204 LSFNQAAERSPNNAD 218
Cdd:TIGR02521 190 AYLERYQQTYNQTAE 204
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
297-385 |
2.98e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 297 KLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAItDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADY 376
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 1008899292 377 DQTIMLDPK 385
Cdd:COG3063 83 ERALELDPS 91
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
206-268 |
2.99e-07 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 52.10 E-value: 2.99e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1008899292 206 FNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYE 268
Cdd:PLN03088 25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
28-127 |
3.72e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 3.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 28 KFAGSVKYYSKIIIKTPTD---ADAYYKRGSANLNLRNYKLALADFNKALAINP---KYVEAILDRGRAYQSLEQYASAI 101
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDKAR 87
|
90 100
....*....|....*....|....*.
gi 1008899292 102 KEYNAYLILNPNSSAGYYNRGMVKRL 127
Cdd:COG1729 88 ATLEELIKKYPDSEAAKEARARLARL 113
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
58-112 |
1.18e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 45.67 E-value: 1.18e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 58 LNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNP 112
Cdd:pfam13371 6 LREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAP 60
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
37-178 |
2.33e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.98 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 37 SKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSA 116
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 117 GYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDL 178
Cdd:TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
198-349 |
3.98e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 3.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 198 AYKDAILSFNQAAERSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLI 277
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 278 LAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLD 349
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
299-386 |
4.69e-06 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 48.24 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 299 NNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQ 378
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95
|
....*...
gi 1008899292 379 TIMLDPKD 386
Cdd:PLN03088 96 GASLAPGD 103
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
60-113 |
6.65e-06 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 47.51 E-value: 6.65e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1008899292 60 LRNYKLALA---DFNKALA-------INPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPN 113
Cdd:COG2912 182 LRNLKAAYLrekDWERALRvverlllLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPE 245
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
231-319 |
6.87e-06 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.86 E-value: 6.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 231 ESYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDS 310
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95
|
....*....
gi 1008899292 311 FIKLSPTDP 319
Cdd:PLN03088 96 GASLAPGDS 104
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
148-424 |
1.68e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.90 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 148 DPDFYNEIGICKKRLEDYKGALVEfkkaidlapADYSAYYNsgltqnqmEAYKDAILSFNQAAERSPNnaDIYYS-RGDS 226
Cdd:TIGR00990 109 EIDESSVANLSEEERKKYAAKLKE---------KGNKAYRN--------KDFNKAIKLYSKAIECKPD--PVYYSnRAAC 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 227 HRYMESYDEAISDYSIAIKLDPKFLDAYNNR-----GIAKYGKKDYE-------GDIADANLILAID---PKYANSYYnK 291
Cdd:TIGR00990 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRanaydGLGKYADALLDltasciiDGFRNEQSAQAVErllKKFAESKA-K 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 292 GLANDKLNNYADA--VECYDSFIKLSPTdPDGF-------FKRGNAKLNL----------EDYKSAITDYNETI---KLD 349
Cdd:TIGR00990 249 EILETKPENLPSVtfVGNYLQSFRPKPR-PAGLedsneldEETGNGQLQLglkspeskadESYEEAARAFEKALdlgKLG 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 350 VKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLELGDTDAADY 424
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
88-182 |
2.32e-05 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 43.82 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 88 GRAYQSLEQ--YASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDY 165
Cdd:TIGR02552 22 ALAYNLYQQgrYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101
|
90
....*....|....*..
gi 1008899292 166 KGALVEFKKAIDLAPAD 182
Cdd:TIGR02552 102 ESALKALDLAIEICGEN 118
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
128-211 |
2.33e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.08 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 128 QKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAP-ADYSAYYNSGltqnQMEAYKDAILSF 206
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLG----QLSGGEEALQYY 88
|
....*
gi 1008899292 207 NQAAE 211
Cdd:cd24142 89 EKGIE 93
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
134-291 |
2.83e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.93 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 134 ALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERS 213
Cdd:PLN03088 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 214 PnnadiyysrGDSH--RYMESYDEAISDysiaiklDPKFLDAYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNK 291
Cdd:PLN03088 101 P---------GDSRftKLIKECDEKIAE-------EEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFYQK 164
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
285-421 |
3.17e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.49 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 285 ANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKR 364
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1008899292 365 YLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAAcIDW-KKGLELGDTDA 421
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA-IEVlERLLKLGPENA 144
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
62-221 |
3.66e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 62 NYKLALADFNKALAINPKYVEAILdRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKG 141
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 142 VLIDPKDPDFYNEIGICKKRLEDYKgALVEFKKAIDLAPADYSAYYNSGLTQNQMEAYKDAILSFNQAAERSPNNADIYY 221
Cdd:TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
45-249 |
7.92e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 44.10 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 45 TDADAYYKRGSANLNLRNYKLALADFNKALAINP---KYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSA----- 116
Cdd:COG4105 30 WDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPgspYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNadyay 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 117 -----GYYNRG-MVKRLQKNYTSALEDYQKgvLID-----PKDPDFYNEIGICKKRLEDYkgalvefkkaiDLAPADYsa 185
Cdd:COG4105 110 ylrglSYYEQSpDSDRDQTSTRKAIEAFQE--LINrypdsEYAEDAKKRIDELRDKLARK-----------ELEVARY-- 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1008899292 186 YYnsgltqnQMEAYKDAILSFNQAAE---RSPNNADIYYSRGDSHRYMESYDEAISDYSIAIKLDPK 249
Cdd:COG4105 175 YL-------KRGAYVAAINRFQNVLEdypDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKNYPD 234
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
46-146 |
9.08e-05 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 43.70 E-value: 9.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 46 DADAYYKRGSANLNLRNYKLALADFNKALAINP--KYVE-AILDRGRAYQSLEQYASAIKEYNAYLILNPNSSA---GYY 119
Cdd:TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPfsPYAEqAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDadyAYY 111
|
90 100 110
....*....|....*....|....*....|....*
gi 1008899292 120 NRGM--------VKRLQKNYTSALEDYQKGVLIDP 146
Cdd:TIGR03302 112 LRGLsnynqidrVDRDQTAAREAFEAFQELIRRYP 146
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
47-80 |
1.20e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|....
gi 1008899292 47 ADAYYKRGSANLNLRNYKLALADFNKALAINPKY 80
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
233-425 |
1.57e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.82 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 233 YDEAISDYSIAI--KLDPKFldaYNNRGIAKYGKKDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADA-----V 305
Cdd:TIGR00990 143 FNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAlldltA 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 306 ECY-DSF-------------IKLSPTDPDGFFKRGNAKLN--------LEDYKSAIT--DYNETIKLDVKYGNAYNNRGv 361
Cdd:TIGR00990 220 SCIiDGFrneqsaqaverllKKFAESKAKEILETKPENLPsvtfvgnyLQSFRPKPRpaGLEDSNELDEETGNGQLQLG- 298
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 362 aKRYLSD-----YKGAIADYDQTI---MLDPKDGAAYSNRGYAKQMLGDNTAACIDWKKGLELGDTDAADYI 425
Cdd:TIGR00990 299 -LKSPESkadesYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
164-249 |
1.81e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 164 DYKGALVEFKKAIDLAPADY---SAYYNSGLTQNQMEAYKDAILSFNQAAERSPNN---ADIYYSRGDSHRYMESYDEAI 237
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKAR 87
|
90
....*....|..
gi 1008899292 238 SDYSIAIKLDPK 249
Cdd:COG1729 88 ATLEELIKKYPD 99
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
265-320 |
2.26e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 39.51 E-value: 2.26e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1008899292 265 KDYEGDIADANLILAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPD 320
Cdd:pfam13371 9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPD 64
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
95-182 |
2.47e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.85 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 95 EQYASAIKEYNAYLILNPNSSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKDPDFYNEIGICKKRLEDYKGALVEFKK 174
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95
|
....*...
gi 1008899292 175 AIDLAPAD 182
Cdd:PLN03088 96 GASLAPGD 103
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
217-264 |
2.64e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.22 E-value: 2.64e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1008899292 217 ADIYYSRGDshrymesYDEAISDYSIAIKLDPKFLDAYNNRGIAKYGK 264
Cdd:pfam13414 1 GDAYYEQGK-------YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
278-338 |
3.16e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 3.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1008899292 278 LAIDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDPDGFFKRGNAKLNLEDYKSA 338
Cdd:PLN03088 29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
47-149 |
3.83e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 42.18 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 47 ADAYYKRGSAN--LNLRNykLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSAGYYNRGMV 124
Cdd:PRK11189 64 AQLHYERGVLYdsLGLRA--LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141
|
90 100
....*....|....*....|....*
gi 1008899292 125 KRLQKNYTSALEDYQKGVLIDPKDP 149
Cdd:PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDP 166
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
259-347 |
5.32e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 259 IAKYGKKDYEGDIADANLILAIDPK---YANSYYNKGLANDKLNNYADAVECYDSFIKLSPTD---PDGFFKRGNAKLNL 332
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80
|
90
....*....|....*
gi 1008899292 333 EDYKSAITDYNETIK 347
Cdd:COG1729 81 GDYDKARATLEELIK 95
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
328-421 |
6.88e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 6.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 328 AKLNLEDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAAC 407
Cdd:COG5010 29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108
|
90
....*....|....
gi 1008899292 408 IDWKKGLELGDTDA 421
Cdd:COG5010 109 EYYEKALALSPDNP 122
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
34-211 |
7.74e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.89 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 34 KYYSKIIIKTPTDADAYYKRGSANLNLRNYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPN 113
Cdd:TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 114 SSAGYYNRGMVKRLQKNYTSALEDYQKGVLIDPK-DPDFYNEIGICKKRL------EDYKGALVEFKKAIDLAPADYSAY 186
Cdd:TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKEtKPMYMNVLPLINKALalfqwkQDFIEAENLCEKALIIDPECDIAV 545
|
170 180
....*....|....*....|....*
gi 1008899292 187 YNSGLTQNQMEAYKDAILSFNQAAE 211
Cdd:TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAE 570
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
47-80 |
9.04e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 9.04e-04
10 20 30
....*....|....*....|....*....|....
gi 1008899292 47 ADAYYKRGSANLNLRNYKLALADFNKALAINPKY 80
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
96-180 |
9.79e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 9.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 96 QYASAIKEYNAYLILNPNSS---AGYYNRGMVKRLQKNYTSALEDYQKGVLIDPKD---PDFYNEIGICKKRLEDYKGAL 169
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKAR 87
|
90
....*....|.
gi 1008899292 170 VEFKKAIDLAP 180
Cdd:COG1729 88 ATLEELIKKYP 98
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
217-250 |
9.95e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 9.95e-04
10 20 30
....*....|....*....|....*....|....
gi 1008899292 217 ADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKF 250
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
62-116 |
1.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 1.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1008899292 62 NYKLALADFNKALAINPKYVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSSA 116
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPR 57
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
217-250 |
1.43e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.43e-03
10 20 30
....*....|....*....|....*....|....
gi 1008899292 217 ADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKF 250
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
44-113 |
2.05e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 2.05e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 44 PTDADAYYKRGSANLNLRNYKLALADFNKALAINPKY--VEAILDRGRAYQSLEQYASAIKEYNAYLILNPN 113
Cdd:COG4700 121 ADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYSG 192
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
58-140 |
2.63e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 58 LNLRNYKLALADFNKALAINPK---YVEAILDRGRAYQSLEQYASAIKEYNAYLILNPNSS---AGYYNRGMVKRLQKNY 131
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDY 83
|
....*....
gi 1008899292 132 TSALEDYQK 140
Cdd:COG1729 84 DKARATLEE 92
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
333-417 |
2.68e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 39.77 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 333 EDYKSAITDYNETIKLDVKYGNAYNNRGVAKRYLSDYKGAIADYDQTIMLDPKDGAAYSNRGYAKQMLGDNTAAcidwKK 412
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA----KA 91
|
....*
gi 1008899292 413 GLELG 417
Cdd:PLN03088 92 ALEKG 96
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
47-79 |
2.77e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 2.77e-03
10 20 30
....*....|....*....|....*....|...
gi 1008899292 47 ADAYYKRGSANLNLRNYKLALADFNKALAINPK 79
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
199-319 |
4.22e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 199 YKDAILSFNQAAERSPNN---ADIYYSRGDSHRYMESYDEAISDYSIAIKLDPKfldaynnrgiakygkkdyegdiadan 275
Cdd:COG1729 9 YDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD-------------------------- 62
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1008899292 276 lilaiDPKYANSYYNKGLANDKLNNYADAVECYDSFIKLSPTDP 319
Cdd:COG1729 63 -----SPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSE 101
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
47-108 |
5.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.83 E-value: 5.38e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1008899292 47 ADAYYKRGSANLNLRNYKLALADFNKALAI--------NPKYVEAILDRGRAYQSLEQYASAIKEYNAYL 108
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
118-148 |
5.41e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 5.41e-03
10 20 30
....*....|....*....|....*....|.
gi 1008899292 118 YYNRGMVKRLQKNYTSALEDYQKGVLIDPKD 148
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
118-181 |
7.66e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.06 E-value: 7.66e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1008899292 118 YYNRGMVKRLQKNYTSALEDYQKGVLI-----DPKDPD---FYNEIGICKKRLEDYKGALVEFKKAIDLAPA 181
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| |
