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Conserved domains on  [gi|1006491978|ref|WP_061777529|]
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MULTISPECIES: hypothetical protein [Lactobacillaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T7_EssCb_Firm super family cl37349
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
 38-117 1.85e-03

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


The actual alignment was detected with superfamily member TIGR03928:

Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 36.50  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1006491978   38 GLIFIAIPPYGLILVLIKI---------VIVVLAMTIVMAILTIRPVAVRKNIKVRDNFKLKRRYANgqklfYLKpKKRG 108
Cdd:TIGR03928   36 GLLRIILPPLVMIAVTVLIsifqprgifIIASIAMSLVTIIFSTTTYFREKKKYKKDVEKRNRSYRL-----YLD-KKRK 109


                   ....*....
gi 1006491978  109 ELNAFEEEQ 117
Cdd:TIGR03928  110 ELQALSEKQ 118
 
Name Accession Description Interval E-value
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
 38-117 1.85e-03

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 36.50  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1006491978   38 GLIFIAIPPYGLILVLIKI---------VIVVLAMTIVMAILTIRPVAVRKNIKVRDNFKLKRRYANgqklfYLKpKKRG 108
Cdd:TIGR03928   36 GLLRIILPPLVMIAVTVLIsifqprgifIIASIAMSLVTIIFSTTTYFREKKKYKKDVEKRNRSYRL-----YLD-KKRK 109


                   ....*....
gi 1006491978  109 ELNAFEEEQ 117
Cdd:TIGR03928  110 ELQALSEKQ 118
 
Name Accession Description Interval E-value
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
 38-117 1.85e-03

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 36.50  E-value: 1.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1006491978   38 GLIFIAIPPYGLILVLIKI---------VIVVLAMTIVMAILTIRPVAVRKNIKVRDNFKLKRRYANgqklfYLKpKKRG 108
Cdd:TIGR03928   36 GLLRIILPPLVMIAVTVLIsifqprgifIIASIAMSLVTIIFSTTTYFREKKKYKKDVEKRNRSYRL-----YLD-KKRK 109


                   ....*....
gi 1006491978  109 ELNAFEEEQ 117
Cdd:TIGR03928  110 ELQALSEKQ 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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