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Conserved domains on  [gi|1005664955|gb|AMQ22958|]
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cytochrome b, partial (mitochondrion) [Calomyscus elburzensis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 658.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 658.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 1.50e-116

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 342.16  E-value: 1.50e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   2 PLMKIINHsFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  82 MFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWG 159
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 160 GFSVDKATLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNADKIPFHPYYTIKDILGVIILIGTLMT 234
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 235 LVLFYPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILVFLPFIHTSKQRSLMFRP 312
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330
                  ....*....|....*..
gi 1005664955 313 ITQILYWMLVADLLILT 329
Cdd:COG1290   336 VRTALGVAFIVFFIVLT 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 9.73e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 271.93  E-value: 9.73e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   2 PLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  82 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1005664955 160 GFSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 3.36e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.61  E-value: 3.36e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  11 FIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  91 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1005664955 169 TRFFAFHFILPFIITALVLVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-318 1.64e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 222 ILGVIILIGTLMTLvlfYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90
                  ....*....|....*...
gi 1005664955 302 T-SKQRSLMFRPITQILY 318
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 658.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
CYTB MTH00119
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 591.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00119  329 LVANLLILT 337
CYTB MTH00131
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 590.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00131  328 LVADVLILT 336
CYTB MTH00074
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 582.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00074  329 LVANTLILT 337
CYTB MTH00191
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 561.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00191  325 WVANFILLT 333
CYTB MTH00156
cytochrome b; Provisional
 4-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 554.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   4 MKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  84 FICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 164 DKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYPDLL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 244 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWMLVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320


                  ....*.
gi 1005664955 324 DLLILT 329
Cdd:MTH00156  321 IVILLT 326
CYTB MTH00145
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 527.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00145  329 FVGNFFILT 337
CYTB MTH00034
cytochrome b; Validated
 1-329 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 517.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00034  328 LIATFFILT 336
CYTB MTH00016
cytochrome b; Validated
 1-329 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 505.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00016  329 LVSNFLLLT 337
CYTB MTH00022
cytochrome b; Validated
 1-329 1.06e-157

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 446.07  E-value: 1.06e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00022  327 LIVDFILLT 335
CYTB MTH00224
cytochrome b; Provisional
 1-329 2.44e-156

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 442.82  E-value: 2.44e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   1 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 161 FSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 241 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWM 320
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328


                  ....*....
gi 1005664955 321 LVADLLILT 329
Cdd:MTH00224  329 LVTSWAILT 337
CYTB MTH00053
cytochrome b; Provisional
 2-329 3.37e-155

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 439.91  E-value: 3.37e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   2 PLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  82 MFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 162 SVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYPD 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 242 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWML 321
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329


                  ....*...
gi 1005664955 322 VADLLILT 329
Cdd:MTH00053  330 VGDFFLLT 337
CYTB MTH00033
cytochrome b; Provisional
 12-329 1.13e-121

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 354.63  E-value: 1.13e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  12 IDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 91
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  92 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 171
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 172 FAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVL--FYPDLLGDPDNY 249
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 250 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWMLVADLLILT 329
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 1.50e-116

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 342.16  E-value: 1.50e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   2 PLMKIINHsFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  82 MFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWG 159
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 160 GFSVDKATLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNADKIPFHPYYTIKDILGVIILIGTLMT 234
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 235 LVLFYPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILVFLPFIHTSKQRSLMFRP 312
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330
                  ....*....|....*..
gi 1005664955 313 ITQILYWMLVADLLILT 329
Cdd:COG1290   336 VRTALGVAFIVFFIVLT 352
CYTB MTH00086
cytochrome b; Provisional
 5-284 1.28e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 307.64  E-value: 1.28e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   5 KIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFF 84
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  85 ICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVD 164
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 165 KATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIgTLMTLVLFYPDLLG 244
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1005664955 245 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 284
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 9.73e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 271.93  E-value: 9.73e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   2 PLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  82 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1005664955 160 GFSVDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 3.36e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.61  E-value: 3.36e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  11 FIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  91 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1005664955 169 TRFFAFHFILPFIITALVLVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 3-283 3.15e-79

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 245.28  E-value: 3.15e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955   3 LMKIINHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASM 82
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  83 FFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFS 162
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 163 VDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNP-SGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYPD 241
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1005664955 242 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 283
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-329 6.98e-43

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 145.10  E-value: 6.98e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 200 NPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVLFYPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1005664955 280 KLGGVLALILSILILVFLPFIHTSKQRSlMFRPITQILYWMLVADLLILT 329
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLG 129
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 2.09e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.00  E-value: 2.09e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  81 SMFFICLFLHVGRGIYYGSYTFME--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 159 GGFSVDKATLTRFFAFHF-ILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGTLMTLVL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1005664955 238 FYPDLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 26-182 2.00e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 135.99  E-value: 2.00e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  26 FGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFME- 104
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 105 -TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 182
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
petB CHL00070
cytochrome b6
 17-181 1.27e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.60  E-value: 1.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  17 PSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 96
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955  97 YGSYTFME--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAF 174
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                  ....*...
gi 1005664955 175 H-FILPFI 181
Cdd:CHL00070  187 HtFVLPLL 194
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-329 1.76e-28

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 106.02  E-value: 1.76e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1005664955 251 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIHTSKQRSLMFRPITQILYWMLVADLLILT 329
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLG 79
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 222-300 9.39e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.73  E-value: 9.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 222 ILGVIIL--IGTLMTLVLFYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPF 299
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114


                  .
gi 1005664955 300 I 300
Cdd:COG5679   115 I 115
petD CHL00058
cytochrome b6/f complex subunit IV
 222-314 4.81e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.62  E-value: 4.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 222 ILGVIILIGTLMTLvlfYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIH 301
Cdd:CHL00058   44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                          90
                  ....*....|....
gi 1005664955 302 TSKQRSLMF-RPIT 314
Cdd:CHL00058  116 NVNKFQNPFrRPVA 129
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-318 1.64e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005664955 222 ILGVIILIGTLMTLvlfYPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILVFLPFIH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90
                  ....*....|....*...
gi 1005664955 302 T-SKQRSLMFRPITQILY 318
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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