|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
28-219 |
2.31e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 117.42 E-value: 2.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 28 IEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTF 107
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 108 MLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENN 187
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190
....*....|....*....|....*....|..
gi 1005571649 188 EKALALFKKATEIQPEHFLAGNGVRLLEQEAE 219
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAA 192
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
5-207 |
2.32e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 110.20 E-value: 2.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQ 84
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 85 FTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVL 164
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1005571649 165 EMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
11-217 |
2.49e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 104.81 E-value: 2.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 91 VFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEH 170
Cdd:COG2956 132 VLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1005571649 171 ADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLAGNGVRLLEQE 217
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERK 258
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
8-219 |
6.04e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.85 E-value: 6.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 88 AKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 168 EEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLAGNGVRLLEQEAE 219
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
35-207 |
3.77e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.03 E-value: 3.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 35 ALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHV 114
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 115 QLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALF 194
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170
....*....|...
gi 1005571649 195 KKATEIQPEHFLA 207
Cdd:COG2956 168 EKALKLDPDCARA 180
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
10-207 |
6.88e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.22 E-value: 6.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 10 QYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAK 89
Cdd:COG3914 53 EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 90 AVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEE 169
Cdd:COG3914 133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1005571649 170 HADAYYNL-------GVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:COG3914 213 NADAHSNLlfalrqaCDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
8-192 |
7.65e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.98 E-value: 7.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 88 AKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:COG0457 129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
170 180
....*....|....*....|....*
gi 1005571649 168 EEHADAYYNLGVAYVFEENNEKALA 192
Cdd:COG0457 209 KKLAILTLAALAELLLLALALLLAL 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
5-136 |
2.70e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.92 E-value: 2.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQ 84
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 85 FTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDEND 136
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
31-207 |
6.63e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.58 E-value: 6.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 31 NPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLG 110
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 111 ITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKA 190
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170
....*....|....*..
gi 1005571649 191 LALFKKATEIQPEHFLA 207
Cdd:COG3914 166 IAALRRALELDPDNAEA 182
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
69-204 |
3.37e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 3.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 69 AAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFA 148
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1005571649 149 RLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
31-199 |
8.59e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 75.72 E-value: 8.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 31 NPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLG 110
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 111 ITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHvQEAKpyfekvLEMDEEHADAYYNLGvayvfeeNNEKA 190
Cdd:COG4785 149 IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP-EKAL------ALLLEDWATAYLLQG-------DTEEA 214
|
....*....
gi 1005571649 191 LALFKKATE 199
Cdd:COG4785 215 RELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
19-140 |
3.73e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.96 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 19 EAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQA 98
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1005571649 99 GLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAV 140
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
34-170 |
2.25e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 34 DALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITH 113
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1005571649 114 VQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEH 170
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
87-203 |
1.66e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.34 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 87 EAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEM 166
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1005571649 167 DEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
53-174 |
2.25e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.34 E-value: 2.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 53 RAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATEL 132
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1005571649 133 DENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAY 174
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
5-119 |
3.59e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.79 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQ 84
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110
....*....|....*....|....*....|....*
gi 1005571649 85 FTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGND 119
Cdd:COG4785 157 YELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
11-98 |
2.85e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.27 E-value: 2.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFyKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*...
gi 1005571649 91 VFEQAMQA 98
Cdd:COG3063 81 YLERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
8-97 |
4.83e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.49 E-value: 4.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|
gi 1005571649 88 AKAVFEQAMQ 97
Cdd:COG4235 104 AIAAWQKLLA 113
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
8-219 |
2.01e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 88 AKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 168 EEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLAGNGVRLLEQEAE 219
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
4-207 |
3.05e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 3.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 4 KLETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQE 83
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 84 QFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKV 163
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1005571649 164 LEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-204 |
3.32e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 3.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQ 84
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 85 FTEAKAVFE-QAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQcglcFARLEHVQ----EAKPY 159
Cdd:TIGR02917 106 FQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLG----LAQLALAEnrfdEARAL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1005571649 160 FEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
5-129 |
5.58e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.21 E-value: 5.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQ 84
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD 227
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1005571649 85 FTEAKAVFEQAMQAGlQSADVTFMLGITHVQLGNDRLALPFLQRA 129
Cdd:COG2956 228 PEEALELLRKALELD-PSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
38-218 |
1.25e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.85 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 38 YINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAM------QAGLQSADVTFMLGI 111
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 112 THVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKAL 191
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
170 180
....*....|....*....|....*..
gi 1005571649 192 ALFKKATEIQPEHFLAGNGVRLLEQEA 218
Cdd:COG4785 162 ADLEKALELDPNDPERALWLYLAERKL 188
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
101-204 |
2.66e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 2.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 101 QSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVA 180
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100
....*....|....*....|....
gi 1005571649 181 YVFEENNEKALALFKKATEIQPEH 204
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEH 105
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
11-97 |
4.17e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 4.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
....*..
gi 1005571649 91 VFEQAMQ 97
Cdd:COG5010 144 ALQRALG 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
126-207 |
9.32e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.32 E-value: 9.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 126 LQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHF 205
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
..
gi 1005571649 206 LA 207
Cdd:COG4235 86 EA 87
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
53-202 |
5.31e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 5.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 53 RAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATEL 132
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 133 DENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQP 202
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
113-203 |
7.58e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 7.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 113 HVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPyFEKVLEMDEEHADAYYNLGVAYVFEENNEKALA 192
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1005571649 193 LFKKATEIQPE 203
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
16-133 |
2.29e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.20 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 16 NWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQA 95
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
90 100 110
....*....|....*....|....*....|....*...
gi 1005571649 96 MQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELD 133
Cdd:COG5010 115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
12-204 |
3.00e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.25 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 12 MQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAV 91
Cdd:TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 92 FEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHA 171
Cdd:TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669
|
170 180 190
....*....|....*....|....*....|...
gi 1005571649 172 DAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
60-207 |
1.15e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.61 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 60 RALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDEndveA 139
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA----L 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1005571649 140 VFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-217 |
1.88e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.93 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 91 VFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVfQCGLCFARLEHVQEAKPYFEKVLEMDEEH 170
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPND 769
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1005571649 171 ADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLAGNGVRLLEQE 217
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE 816
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
9-94 |
5.16e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.60 E-value: 5.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 9 IQYMQEGNWEEAAKNFTEAIEENPKDALG---YINFANLLDVLGDSERAILFYKRALEL---DDKSAAAYYGLGNVYYGQ 82
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
|
90
....*....|..
gi 1005571649 83 EQFTEAKAVFEQ 94
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
12-203 |
7.47e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 7.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 12 MQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAV 91
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 92 FEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVL------- 164
Cdd:TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILkyapnsh 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1005571649 165 ---------------------------EMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:TIGR02917 330 qarrllasiqlrlgrvdeaiatlspalGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE 395
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
26-167 |
7.85e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 7.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 26 EAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADV 105
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 106 TFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
83-203 |
3.72e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.98 E-value: 3.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 83 EQFTEAKAVFEQAMQAGLQSADVTFML---GITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPY 159
Cdd:TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALnlrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1005571649 160 FEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
8-207 |
7.04e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.31 E-value: 7.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIEL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 88 AKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1005571649 168 EEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
4-204 |
1.25e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 4 KLETGIQYMQEGNWEEAAKNFTEAIEENPKdaLGYINFANLLDVL--GDSERAILFYKRALELDDKSAAAYYGLGNVYYG 81
Cdd:TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLILSYLrsGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 82 QEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFE 161
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1005571649 162 KVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
38-175 |
1.40e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 47.57 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 38 YINFANLLDVLGDSERAILFYKRALELDDK-SAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAG--LQSADVTFMLGITHV 114
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTGIFAdDPHILLGLAQALFELGRYAEALETLEKLIAKNpdFKSSDAHLLYARALE 171
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1005571649 115 QLGNDRLALPFLQRATELdENDVEAVFQCGLCFARLEHVQEAKPYFEKVLeMDEEHADAYY 175
Cdd:COG4700 172 ALGDLEAAEAELEALARR-YSGPEARYRYAKFLARQGRTAEAKELLEEIL-DEAKHMPKHY 230
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
78-169 |
1.70e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 78 VYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFlQRATELDENDVEAVFQCGLCFARLEHVQEAK 157
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1005571649 158 PYFEKVLEMDEE 169
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-129 |
2.79e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSeRAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
|
90 100 110
....*....|....*....|....*....|....*....
gi 1005571649 91 VFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRA 129
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
136-207 |
4.37e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.37e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 136 DVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
112-200 |
5.82e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.08 E-value: 5.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 112 THVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEH-ADAYYNLGVAyvfeENNEKA 190
Cdd:cd24142 9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL----SGGEEA 84
|
90
....*....|
gi 1005571649 191 LALFKKATEI 200
Cdd:cd24142 85 LQYYEKGIEI 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
24-207 |
6.69e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 6.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 24 FTEAIEENP-KDALGYINFANLLDVLGDS-------ERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQA 95
Cdd:TIGR02917 106 FQQVLDELPgKTLLDDEGAAELLALRGLAylglgqlELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 96 MQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYY 175
Cdd:TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265
|
170 180 190
....*....|....*....|....*....|..
gi 1005571649 176 NLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:TIGR02917 266 LKALVDFQKKNYEDARETLQDALKSAPEYLPA 297
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
113-207 |
9.71e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 9.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 113 HVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALA 192
Cdd:COG5010 30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109
|
90
....*....|....*
gi 1005571649 193 LFKKATEIQPEHFLA 207
Cdd:COG5010 110 YYEKALALSPDNPNA 124
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-192 |
1.50e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.07 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGyINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKA 90
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 91 VFEQAMQAGLQSADVTFMLGITHVQLGNDRlALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEH 170
Cdd:TIGR02917 792 HYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870
|
170 180
....*....|....*....|..
gi 1005571649 171 ADAYYNLGVAYVfeENNEKALA 192
Cdd:TIGR02917 871 AAIRYHLALALL--ATGRKAEA 890
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
146-207 |
1.87e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.87e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 146 CFARLEHVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALAlFKKATEIQPEHFLA 207
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEA 61
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
15-200 |
1.91e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.97 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 15 GNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQ 94
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 95 AMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDE-------NDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkpmymNVLPLINKALALFQWKQDFIEAENLCEKALIID 538
|
170 180 190
....*....|....*....|....*....|...
gi 1005571649 168 EEHADAYYNLGVAYVFEENNEKALALFKKATEI 200
Cdd:TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
69-135 |
1.92e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 1.92e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1005571649 69 AAAYYGLGNVYYGQEQFTEAKAVFEQAMQA--------GLQSADVTFMLGITHVQLGNDRLALPFLQRATELDEN 135
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
14-105 |
2.35e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.12 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 14 EGNWEEAAKNFTEAI--EENPKDAlGYI--NFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAK 89
Cdd:PRK02603 48 DGEYAEALENYEEALklEEDPNDR-SYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126
|
90
....*....|....*.
gi 1005571649 90 AVFEQAMQAGLQSADV 105
Cdd:PRK02603 127 GDQDEAEALFDKAAEY 142
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
7-117 |
2.52e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.59 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 7 TGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFT 86
Cdd:TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416
|
90 100 110
....*....|....*....|....*....|.
gi 1005571649 87 EAKAVFEQAMQaglqsADVTFMLgiTHVQLG 117
Cdd:TIGR00990 417 QAGKDYQKSID-----LDPDFIF--SHIQLG 440
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
17-203 |
3.45e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.20 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 17 WEEAAKNFTEAIEEN---PKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFE 93
Cdd:TIGR00990 310 YEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 94 QAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEHADA 173
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469
|
170 180 190
....*....|....*....|....*....|
gi 1005571649 174 YYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
48-82 |
7.26e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.99 E-value: 7.26e-05
10 20 30
....*....|....*....|....*....|....*
gi 1005571649 48 LGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQ 82
Cdd:pfam13414 7 QGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
5-139 |
8.75e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.59 E-value: 8.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 5 LETGIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSA-AAYYGLGNVYYGQE 83
Cdd:COG3071 20 LLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAElAVLLTRAELLLDQG 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1005571649 84 QFTEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLA---LPFLQRATELDENDVEA 139
Cdd:COG3071 100 QAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELlelLPALRKHKALSAEEAQA 158
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
12-199 |
8.95e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 42.22 E-value: 8.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 12 MQEGNWEEAAKNFTEAIEENPKDA---LGYInFANLLDVLGDSERAILFYKRALELDDksAAAYYGLGNVYY---GQEQ- 84
Cdd:COG0790 42 AAAAGAAAAAAAAAAAAAAGGAEAqynLGLM-YAEGRGVPKDYEKALEWFEKAAEQGD--AEAQYNLGLMYEeglGVPQd 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 85 FTEAKAVFEQAMQAGlqSADVTFMLGITHVQ----LGNDRLALPFLQRATELdeNDVEAVFQCGLCFARLEHV----QEA 156
Cdd:COG0790 119 YAKALEWYEKAAEQG--DADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENGRGVpkdpAKA 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1005571649 157 KPYFEKVLEMDeeHADAYYNLGVAYVF----EENNEKALALFKKATE 199
Cdd:COG0790 195 LEWYRKAAEQG--DADAQYNLGRLYLNgegvEKDLEKALRWLRKAAE 239
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
171-204 |
9.35e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 9.35e-05
10 20 30
....*....|....*....|....*....|....
gi 1005571649 171 ADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
8-136 |
1.37e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.53 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTE 87
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVL 196
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1005571649 88 AKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDEND 136
Cdd:COG0457 197 LALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-203 |
1.77e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYgLGNVYYGQEQFTEAKA 90
Cdd:TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 91 VFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDveAVFQCGLCFARLEHVQ-EAKPYFEKVLEMDEE 169
Cdd:TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNLAWLYLELKDpRALEYAERALKLAPN 835
|
170 180 190
....*....|....*....|....*....|....
gi 1005571649 170 HADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
16-107 |
1.89e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 41.70 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 16 NWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQA 95
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96
|
90
....*....|..
gi 1005571649 96 mqAGLQSADVTF 107
Cdd:PLN03088 97 --ASLAPGDSRF 106
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
171-204 |
2.41e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 2.41e-04
10 20 30
....*....|....*....|....*....|....
gi 1005571649 171 ADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
64-167 |
2.72e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.61 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 64 LDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQaglQSADVTF---MLGITHVQLGNDRLALPFLQRATELDENDVEAV 140
Cdd:PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK---QLADPAFrarAQGLAAVDSGQGGKAIPELQQAVRANPKDSEAL 306
|
90 100
....*....|....*....|....*..
gi 1005571649 141 FQCGLCFARLEHVQEAKPYFEKVLEMD 167
Cdd:PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALD 333
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
17-199 |
3.39e-04 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 40.30 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 17 WEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYY---GQEQ-FTEAKAVF 92
Cdd:COG0790 11 AAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAegrGVPKdYEKALEWF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 93 EQAMQAGlqSADVTFMLGITHVQ-LG---NDRLALPFLQRATELdeNDVEAVFQCGLCFARLEHVQ----EAKPYFEKVL 164
Cdd:COG0790 91 EKAAEQG--DAEAQYNLGLMYEEgLGvpqDYAKALEWYEKAAEQ--GDADAQYNLGLLYLNGEGVPkdpaKAAEWYRKAA 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 1005571649 165 EMDeeHADAYYNLGVAYVF----EENNEKALALFKKATE 199
Cdd:COG0790 167 EQG--DADAQYNLGVLYENgrgvPKDPAKALEWYRKAAE 203
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
10-135 |
4.85e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 10 QYMQEGNWEEAAKNFTEAIEENPKDALGYInFANLLdvLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAK 89
Cdd:COG3071 202 ALIALGDHDEAERLLREALKRQWDPRLVRL-YGRLQ--GGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1005571649 90 AVFEQAMQAGlQSADVTFMLGITHVQLGNDRLALPFLQRATELDEN 135
Cdd:COG3071 279 EYLEAALALR-PSAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
138-216 |
5.43e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.43 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 138 EAVFQCGLCFARLEHVQEAKPYFEKVLEMDEEH---ADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLAGNGVRLL 214
Cdd:COG1729 31 DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
..
gi 1005571649 215 EQ 216
Cdd:COG1729 111 AR 112
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
11-197 |
6.49e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 6.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELD-DKSAAAYYGLGNVYYGQE---QFT 86
Cdd:cd24142 10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDpDGGYEKYLYLGQLSGGEEalqYYE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 87 EAKAVFEQAMQAGLQSADVTFM-LGITHVQLGNDRLALpflqraTEL------DENDVEavfqcglcfarlehvQEAKPY 159
Cdd:cd24142 90 KGIEILEEELQALQAASAEAEEeAEELKRKLSSALCAL------AEIymtdlcDEPDAE---------------QRCEEL 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 1005571649 160 FEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKA 197
Cdd:cd24142 149 ITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRS 186
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
8-65 |
7.27e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 7.27e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELD 65
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
8-67 |
8.16e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 8.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKnFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDK 67
Cdd:COG3063 33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
171-203 |
8.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.84 E-value: 8.93e-04
10 20 30
....*....|....*....|....*....|...
gi 1005571649 171 ADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
38-98 |
1.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.60 E-value: 1.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1005571649 38 YINFANLLDVLGDSERAILFYKRALELDDKS--------AAAYYGLGNVYYGQEQFTEAKAVFEQAMQA 98
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgpdhpltATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
11-72 |
1.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 1.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAY 72
Cdd:COG4235 61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
49-105 |
1.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 1.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1005571649 49 GDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADV 105
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
152-204 |
1.44e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 38.76 E-value: 1.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1005571649 152 HVQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:cd24142 15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
41-197 |
1.70e-03 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 38.37 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 41 FANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGNVYYGQEQFTEAKAVFEQAMQAGLQSADVTFMLGITHVQ----L 116
Cdd:COG0790 1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 117 GNDRLALPFLQRATELdeNDVEAVFQCGLCFARLEHV----QEAKPYFEKVLEMDeeHADAYYNLGVAYVF----EENNE 188
Cdd:COG0790 81 KDYEKALEWFEKAAEQ--GDAEAQYNLGLMYEEGLGVpqdyAKALEWYEKAAEQG--DADAQYNLGLLYLNgegvPKDPA 156
|
....*....
gi 1005571649 189 KALALFKKA 197
Cdd:COG0790 157 KAAEWYRKA 165
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
11-71 |
2.68e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 2.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1005571649 11 YMQEGNWEEAAKNFTEAIEENPKDAL---GYINFANLLDVLGDSERAILFYKRALELDDKSAAA 71
Cdd:COG1729 40 YYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
154-204 |
3.47e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.87 E-value: 3.47e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1005571649 154 QEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPEH 204
Cdd:pfam14559 5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDD 55
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
8-67 |
4.70e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 37.20 E-value: 4.70e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIEENPkDALGYINFANLLDVLGDSERAILFYKRALELDDK 67
Cdd:COG3071 265 GRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
144-203 |
5.41e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 34.67 E-value: 5.41e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1005571649 144 GLCFARLEHVQEAKPYFEKVLEMDEE--------HADAYYNLGVAYVFEENNEKALALFKKATEIQPE 203
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEIARRllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
24-55 |
6.01e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 33.29 E-value: 6.01e-03
10 20 30
....*....|....*....|....*....|..
gi 1005571649 24 FTEAIEENPKDALGYINFANLLDVLGDSERAI 55
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
8-67 |
6.66e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 34.29 E-value: 6.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1005571649 8 GIQYMQEGNWEEAAKNFTEAIE--------ENPKDALGYINFANLLDVLGDSERAILFYKRALELDDK 67
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
154-207 |
7.37e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 34.97 E-value: 7.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1005571649 154 QEAKPYFEKVLEMDEEH---ADAYYNLGVAYVFEENNEKALALFKKATEIQPEHFLA 207
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA 66
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|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
4-82 |
9.68e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 36.01 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005571649 4 KLETGIQYMQEGNWEEAAKNFtEAIEEN----PKDALGYINFANLLDVLGDSERAILFYKRALEL--DDKSAA-AYYGLG 76
Cdd:COG4105 35 LYEEAKEALEKGDYEKAIKLF-EELEPRypgsPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLypNSPNADyAYYLRG 113
|
....*.
gi 1005571649 77 NVYYGQ 82
Cdd:COG4105 114 LSYYEQ 119
|
|
| |
