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Conserved domains on  [gi|1005501759|gb|AMQ10329|]
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RNA polymerase II second largest subunit, partial [Xylariomycetidae sp. ARIZ FL1681]

Protein Classification

DNA-directed RNA polymerase subunit B family protein( domain architecture ID 1000145)

DNA-directed RNA polymerase subunit B family protein similar to fungal DNA-directed RNA polymerase II subunit RPB2

CATH:  3.90.1110.10|3.90.1070.20
EC:  2.7.7.6
Gene Ontology:  GO:0003899|GO:0000428|GO:0008270|GO:0003677|GO:0006351
PubMed:  11839495
SCOP:  4003708

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
1-329 8.83e-74

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 246.02  E-value: 8.83e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759    1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWGDQKkamsstAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG 80
Cdd:PRK08565   356 DLKYQLEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQ 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   81 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSISVGTSTEPIIDYMitRNMEV--LEEYDPIRYPNATKIFLNG 158
Cdd:PRK08565   430 PHFEARDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEIL--YELGVvpVEEAREEEYISWSRVYLNG 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  159 SWIGVHQDPKTLVKDVMQLRRNAQIPAEVSlVRDIRDREFK---IFSDAGRVMRPLYVVepeddpdrkiEKGTLVLKKDM 235
Cdd:PRK08565   508 RLIGYHPDGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVV----------ENGKPKLTREH 576

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  236 IRKLENDALleagsdefyGWNGLVHDGAVEYLDAEEEETAMICMTPEDLetyrlakqgydvsqdlseepnkrvktrinps 315
Cdd:PRK08565   577 VEKLKKGEL---------TFDDLVKMGVIEYLDAEEEENAYVALDPEDL------------------------------- 616

                          330
                   ....*....|....
gi 1005501759  316 THMYTHCEIHPSML 329
Cdd:PRK08565   617 TPEHTHLEIWPPAI 630
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 1-329 8.83e-74

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 246.02  E-value: 8.83e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759    1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWGDQKkamsstAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG 80
Cdd:PRK08565   356 DLKYQLEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQ 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   81 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSISVGTSTEPIIDYMitRNMEV--LEEYDPIRYPNATKIFLNG 158
Cdd:PRK08565   430 PHFEARDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEIL--YELGVvpVEEAREEEYISWSRVYLNG 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  159 SWIGVHQDPKTLVKDVMQLRRNAQIPAEVSlVRDIRDREFK---IFSDAGRVMRPLYVVepeddpdrkiEKGTLVLKKDM 235
Cdd:PRK08565   508 RLIGYHPDGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVV----------ENGKPKLTREH 576

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  236 IRKLENDALleagsdefyGWNGLVHDGAVEYLDAEEEETAMICMTPEDLetyrlakqgydvsqdlseepnkrvktrinps 315
Cdd:PRK08565   577 VEKLKKGEL---------TFDDLVKMGVIEYLDAEEEENAYVALDPEDL------------------------------- 616

                          330
                   ....*....|....
gi 1005501759  316 THMYTHCEIHPSML 329
Cdd:PRK08565   617 TPEHTHLEIWPPAI 630
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-120 2.39e-45

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 165.05  E-value: 2.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWGDQKKAMSsTAGVSQVLNRYTFSSTLSHLRRTNT-PIGRD 79
Cdd:cd00653   262 EVKEKLQKQLSKKKDLTPQLLINSKPITSGIKEFLATGNWGSKRFLMQ-RSGLSQVLDRLNPLSELSHKRRISSlGLFRE 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1005501759  80 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSIS 120
Cdd:cd00653   341 RKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 55-118 9.37e-32

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 113.39  E-value: 9.37e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005501759  55 QVLNRYTFSSTLSHLRRTNTPIG---RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCS 118
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 22-121 3.81e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 79.38  E-value: 3.81e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   22 VRHQIITNGLKYSLATGnwgdqkkamsstaGVSQVLNRYTFSSTLSHLRRTNT----PIGRDgklaKP----RQLHNTHW 93
Cdd:COG0085    353 INIRPVVAAIKEFFGSS-------------QLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHY 415

                           90       100
                   ....*....|....*....|....*...
gi 1005501759   94 GLVCPAETPEGQACGLVKNLSLMCSISV 121
Cdd:COG0085    416 GRMCPIETPEGPNIGLIGSLALYARVNE 443
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 1-329 8.83e-74

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 246.02  E-value: 8.83e-74
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759    1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWGDQKkamsstAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG 80
Cdd:PRK08565   356 DLKYQLEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQ 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   81 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSISVGTSTEPIIDYMitRNMEV--LEEYDPIRYPNATKIFLNG 158
Cdd:PRK08565   430 PHFEARDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEIL--YELGVvpVEEAREEEYISWSRVYLNG 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  159 SWIGVHQDPKTLVKDVMQLRRNAQIPAEVSlVRDIRDREFK---IFSDAGRVMRPLYVVepeddpdrkiEKGTLVLKKDM 235
Cdd:PRK08565   508 RLIGYHPDGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVV----------ENGKPKLTREH 576

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759  236 IRKLENDALleagsdefyGWNGLVHDGAVEYLDAEEEETAMICMTPEDLetyrlakqgydvsqdlseepnkrvktrinps 315
Cdd:PRK08565   577 VEKLKKGEL---------TFDDLVKMGVIEYLDAEEEENAYVALDPEDL------------------------------- 616

                          330
                   ....*....|....
gi 1005501759  316 THMYTHCEIHPSML 329
Cdd:PRK08565   617 TPEHTHLEIWPPAI 630
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-120 2.39e-45

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 165.05  E-value: 2.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWGDQKKAMSsTAGVSQVLNRYTFSSTLSHLRRTNT-PIGRD 79
Cdd:cd00653   262 EVKEKLQKQLSKKKDLTPQLLINSKPITSGIKEFLATGNWGSKRFLMQ-RSGLSQVLDRLNPLSELSHKRRISSlGLFRE 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1005501759  80 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSIS 120
Cdd:cd00653   341 RKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 1-144 2.54e-34

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 130.84  E-value: 2.54e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   1 EITMNLKRCVELNKDFSVKAHVRHQIITNGLKYSLATGNWgdqkkaMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG 80
Cdd:PRK09606  359 DVKYQLERANMRNRELSIKTAVRSDVLTERLEHAMATGNW------VGGRTGVSQLLDRTDYMATLSHLRRVVSPLSRSQ 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1005501759  81 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSISVGTSTEPIIDymITRNMEVLEEYD 144
Cdd:PRK09606  433 PHFEARDLHPTQWGRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKE--ILKELGVEPERG 494
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 55-118 9.37e-32

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 113.39  E-value: 9.37e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005501759  55 QVLNRYTFSSTLSHLRRTNTPIG---RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCS 118
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 154-215 4.14e-29

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 106.30  E-value: 4.14e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005501759 154 IFLNGSWIGVHQDPKTLVKDVMQLRRNAQIPAEVSLVRDIRDREFKIFSDAGRVMRPLYVVE 215
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 152-284 2.82e-27

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 111.98  E-value: 2.82e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759 152 TKIFLNGSWIGVHQDPKTLVKDVMQLRRNAQIPAEVSLVRDIRDREFKIFSDAGRVMRPLYVVepeddpdrkiEKGTLVL 231
Cdd:PRK07225    5 AKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVV----------ENGEPLL 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1005501759 232 KKDMIRKLENDALleagsdefyGWNGLVHDGAVEYLDAEEEETAMICMTPEDL 284
Cdd:PRK07225   75 TEEHIEKLKNGEL---------TFDDLVKQGVIEYLDAEEEENAYIAVYEEDL 118
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 255-326 1.00e-23

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 91.83  E-value: 1.00e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1005501759 255 WNGLVHDGAVEYLDAEEEETAMICMTPEDLETY-RLAKQGydvsqdlseepnkrvktrinPSTHMYTHCEIHP 326
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESsREEREG--------------------PYAHTYTHCEIHP 53
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 22-121 3.81e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 79.38  E-value: 3.81e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   22 VRHQIITNGLKYSLATGnwgdqkkamsstaGVSQVLNRYTFSSTLSHLRRTNT----PIGRDgklaKP----RQLHNTHW 93
Cdd:COG0085    353 INIRPVVAAIKEFFGSS-------------QLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHY 415

                           90       100
                   ....*....|....*....|....*...
gi 1005501759   94 GLVCPAETPEGQACGLVKNLSLMCSISV 121
Cdd:COG0085    416 GRMCPIETPEGPNIGLIGSLALYARVNE 443
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
49-144 1.40e-07

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 53.09  E-value: 1.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005501759   49 STAGVSQVLNRYTFSSTLSHLRRTNT--PIG--RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCSIS---- 120
Cdd:PRK14844   528 NSSQLSQFMDQTNPLSEITHKRRLSAlgPGGltRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINkygf 607

                           90       100
                   ....*....|....*....|....
gi 1005501759  121 VGTSTEPIIDYMITRNMEVLEEYD 144
Cdd:PRK14844   608 IESPYRKVVNRVVTDQIEYLSAID 631
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
53-114 1.66e-06

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 49.92  E-value: 1.66e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1005501759   53 VSQVLNRYTFSSTLSHLRRTNTpIGrDGKLAK------PRQLHNTHWGLVCPAETPEGQACGLVKNLS 114
Cdd:PRK09603   525 LSQFMDQTNPLSEVTHKRRLSA-LG-EGGLVKdrvgfeARDVHPTHYGRICPIETPEGQNIGLINTLS 590
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 53-114 2.90e-05

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 45.85  E-value: 2.90e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005501759   53 VSQVLNRYTFSSTLSHLRRTNT--PIGRDgKLAKP---RQLHNTHWGLVCPAETPEGQACGLVKNLS 114
Cdd:CHL00207   366 LSQYMDQTNPLSELTHKRRISIlgPGGLD-KDRISfavRDIHPSHYGRICPIETPEGPNCGLIGSLA 431
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 86-114 1.23e-04

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 43.94  E-value: 1.23e-04
                           10        20
                   ....*....|....*....|....*....
gi 1005501759   86 RQLHNTHWGLVCPAETPEGQACGLVKNLS 114
Cdd:PRK00405   469 RDVHPTHYGRICPIETPEGPNIGLINSLA 497
rpoB CHL00001
RNA polymerase beta subunit
 54-114 2.60e-03

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 39.50  E-value: 2.60e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1005501759   54 SQVLNRYTFSSTLSHLRRTNT--PIGRDGKLA--KPRQLHNTHWGLVCPAETPEGQACGLVKNLS 114
Cdd:CHL00001   375 SQFLDQTNPLTEIVHGRKLSSlgPGGLTGRTAsfRVRDIHPSHYGRICPIDTSEGINAGLIGSLA 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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