NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1004130815|gb|KXZ40832|]
View 

hypothetical protein GPECTOR_2058g1058 [Gonium pectorale]

Protein Classification

histone H2A( domain architecture ID 11476421)

histone H2A is a core component of the nucleosome which plays a central role in DNA double strand break (DSB) repair

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN00157 PLN00157
histone H2A; Provisional
 1-130 1.69e-71

histone H2A; Provisional


:

Pssm-ID: 177758  Cd Length: 132  Bit Score: 210.09  E-value: 1.69e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   1 MAGRGKGKTAG--KKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78
Cdd:PLN00157    1 MSGRGKRKGGGggKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1004130815  79 VPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAEDGSA 130
Cdd:PLN00157   81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKSKGEPKDP 132
 
Name Accession Description Interval E-value
PLN00157 PLN00157
histone H2A; Provisional
 1-130 1.69e-71

histone H2A; Provisional


Pssm-ID: 177758  Cd Length: 132  Bit Score: 210.09  E-value: 1.69e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   1 MAGRGKGKTAG--KKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78
Cdd:PLN00157    1 MSGRGKRKGGGggKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1004130815  79 VPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAEDGSA 130
Cdd:PLN00157   81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKSKGEPKDP 132
H2A smart00414
Histone 2A;
16-121 1.58e-66

Histone 2A;


Pssm-ID: 197711  Cd Length: 106  Bit Score: 196.40  E-value: 1.58e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   16 SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGK 95
Cdd:smart00414   1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80

                           90       100
                   ....*....|....*....|....*.
gi 1004130815   96 LLGEVTIASGGVLPNIHAVLLPKKSK 121
Cdd:smart00414  81 LLKGVTIAQGGVLPNIHKVLLPKKTG 106
HFD_H2A cd00074
histone-fold domain found in histone H2A and similar proteins; Histone H2A is the core ...
 15-103 3.82e-55

histone-fold domain found in histone H2A and similar proteins; Histone H2A is the core component of the nucleosome, which wraps and compacts DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.


Pssm-ID: 467020  Cd Length: 89  Bit Score: 166.94  E-value: 3.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815  15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELG 94
Cdd:cd00074     1 QSRSKRAGLQFPVGRIHRLLKKGTYAKRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKKRITPRHIQLAIRNDEELN 80


                  ....*....
gi 1004130815  95 KLLGEVTIA 103
Cdd:cd00074    81 KLFKGVTIA 89
HTA1 COG5262
Histone H2A [Chromatin structure and dynamics];
3-127 3.54e-52

Histone H2A [Chromatin structure and dynamics];


Pssm-ID: 227587 [Multi-domain]  Cd Length: 132  Bit Score: 161.18  E-value: 3.54e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   3 GRGKG-KTAGKKAV-SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80
Cdd:COG5262     3 SGGKGgKAADARVSqSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1004130815  81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAED 127
Cdd:COG5262    83 RHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKGSKRS 129
Histone_H2A_C pfam16211
C-terminus of histone H2A;
91-125 1.11e-16

C-terminus of histone H2A;


Pssm-ID: 465070  Cd Length: 35  Bit Score: 67.94  E-value: 1.11e-16
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1004130815  91 EELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKA 125
Cdd:pfam16211   1 EELNKLLRGVTIAQGGVLPNIHKVLLPKKTKKKKK 35
 
Name Accession Description Interval E-value
PLN00157 PLN00157
histone H2A; Provisional
 1-130 1.69e-71

histone H2A; Provisional


Pssm-ID: 177758  Cd Length: 132  Bit Score: 210.09  E-value: 1.69e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   1 MAGRGKGKTAG--KKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78
Cdd:PLN00157    1 MSGRGKRKGGGggKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1004130815  79 VPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAEDGSA 130
Cdd:PLN00157   81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKSKGEPKDP 132
PTZ00017 PTZ00017
histone H2A; Provisional
 2-129 1.80e-71

histone H2A; Provisional


Pssm-ID: 185399  Cd Length: 134  Bit Score: 209.99  E-value: 1.80e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   2 AGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPR 81
Cdd:PTZ00017    5 GKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPR 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1004130815  82 HIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAEDGS 129
Cdd:PTZ00017   85 HIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPKQGKKQN 132
PLN00153 PLN00153
histone H2A; Provisional
 1-127 5.98e-68

histone H2A; Provisional


Pssm-ID: 165721 [Multi-domain]  Cd Length: 129  Bit Score: 201.10  E-value: 5.98e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   1 MAGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80
Cdd:PLN00153    1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1004130815  81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAED 127
Cdd:PLN00153   81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127
PLN00156 PLN00156
histone H2AX; Provisional
 2-131 1.49e-67

histone H2AX; Provisional


Pssm-ID: 215080  Cd Length: 139  Bit Score: 200.19  E-value: 1.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   2 AGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPR 81
Cdd:PLN00156    7 TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1004130815  82 HIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAEDGSAA 131
Cdd:PLN00156   87 HIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGKGKGDIGSAS 136
H2A smart00414
Histone 2A;
16-121 1.58e-66

Histone 2A;


Pssm-ID: 197711  Cd Length: 106  Bit Score: 196.40  E-value: 1.58e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   16 SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGK 95
Cdd:smart00414   1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80

                           90       100
                   ....*....|....*....|....*.
gi 1004130815   96 LLGEVTIASGGVLPNIHAVLLPKKSK 121
Cdd:smart00414  81 LLKGVTIAQGGVLPNIHKVLLPKKTG 106
HFD_H2A cd00074
histone-fold domain found in histone H2A and similar proteins; Histone H2A is the core ...
 15-103 3.82e-55

histone-fold domain found in histone H2A and similar proteins; Histone H2A is the core component of the nucleosome, which wraps and compacts DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.


Pssm-ID: 467020  Cd Length: 89  Bit Score: 166.94  E-value: 3.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815  15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELG 94
Cdd:cd00074     1 QSRSKRAGLQFPVGRIHRLLKKGTYAKRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKKRITPRHIQLAIRNDEELN 80


                  ....*....
gi 1004130815  95 KLLGEVTIA 103
Cdd:cd00074    81 KLFKGVTIA 89
HTA1 COG5262
Histone H2A [Chromatin structure and dynamics];
3-127 3.54e-52

Histone H2A [Chromatin structure and dynamics];


Pssm-ID: 227587 [Multi-domain]  Cd Length: 132  Bit Score: 161.18  E-value: 3.54e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   3 GRGKG-KTAGKKAV-SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80
Cdd:COG5262     3 SGGKGgKAADARVSqSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1004130815  81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKAED 127
Cdd:COG5262    83 RHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKGSKRS 129
PLN00154 PLN00154
histone H2A; Provisional
 1-121 3.43e-39

histone H2A; Provisional


Pssm-ID: 177756  Cd Length: 136  Bit Score: 128.52  E-value: 3.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   1 MAGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIV 79
Cdd:PLN00154   15 TAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHgRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRIT 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1004130815  80 PRHIQLAIRNDEELGKLLgEVTIASGGVLPNIHAVLLPKKSK 121
Cdd:PLN00154   95 PRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSTK 135
PTZ00252 PTZ00252
histone H2A; Provisional
 4-124 1.91e-34

histone H2A; Provisional


Pssm-ID: 240330  Cd Length: 134  Bit Score: 116.22  E-value: 1.91e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815   4 RGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDN--KKNRIVPR 81
Cdd:PTZ00252    5 KQAKKKASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQakKPKRLTPR 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1004130815  82 HIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVlLPKKSKGGK 124
Cdd:PTZ00252   85 TVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKA-LAKKHKSGK 126
PLN00155 PLN00155
histone H2A; Provisional
 1-58 2.05e-27

histone H2A; Provisional


Pssm-ID: 165723  Cd Length: 58  Bit Score: 95.93  E-value: 2.05e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1004130815   1 MAGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
Cdd:PLN00155    1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
Histone_H2A_C pfam16211
C-terminus of histone H2A;
91-125 1.11e-16

C-terminus of histone H2A;


Pssm-ID: 465070  Cd Length: 35  Bit Score: 67.94  E-value: 1.11e-16
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1004130815  91 EELGKLLGEVTIASGGVLPNIHAVLLPKKSKGGKA 125
Cdd:pfam16211   1 EELNKLLRGVTIAQGGVLPNIHKVLLPKKTKKKKK 35
HFD_SOS1_rpt2 cd22915
second histone-fold domain found in son of sevenless homolog 1 (SOS-1) and similar proteins; ...
 25-98 2.26e-16

second histone-fold domain found in son of sevenless homolog 1 (SOS-1) and similar proteins; SOS-1 is a guanine nucleotide exchange factor for Ras that binds to GRB2. It promotes the exchange of Ras-bound GDP by GTP. It is a catalytic component of a trimeric complex that participates in transduction of signals from Ras to Rac, by promoting the Rac-specific guanine nucleotide exchange factor (GEF) activity. SOS-1 contains tandem histone folds at the N-terminal region. The model corresponds to the second repeat.


Pssm-ID: 467040  Cd Length: 75  Bit Score: 68.42  E-value: 2.26e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1004130815  25 FPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLG 98
Cdd:cd22915     2 FPVDKIHPLLKKDLLVYKVDPQVSLYLVAVLEYIAADILKLAGNYVRNIRHYEITSQDIKVAMCADKVLMDLFG 75
Histone pfam00125
Core histone H2A/H2B/H3/H4;
12-88 1.43e-15

Core histone H2A/H2B/H3/H4;


Pssm-ID: 459682 [Multi-domain]  Cd Length: 126  Bit Score: 67.84  E-value: 1.43e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1004130815  12 KKAVSRSSKAGLQFPVGRIARYLKKG-KYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88
Cdd:pfam00125  47 RKYQSSTDLLIYKLPFARVVREVVQStKTDLRISADAVVALQEAVEDFLVELFEEANLLAIHAKRVTLTPKDIQLARR 124
HFD_ABTB2-like cd22913
histone-fold domain found in ankyrin repeat and BTB/POZ domain-containing protein 2 (ABTB2) ...
 15-97 4.37e-12

histone-fold domain found in ankyrin repeat and BTB/POZ domain-containing protein 2 (ABTB2) and similar proteins; ABTB2, also called Bood POZ containing gene type 2 (BPOZ-2), is a scaffold protein that controls the degradation of many biological proteins ranging from embryonic development to tumor progression. It may be involved in the initiation of hepatocyte growth. It inhibits the aggregation of alpha-synuclein, which has implications for Parkinson's disease. ABTB2 functions as an adaptor protein for the E3 ubiquitin ligase scaffold protein Cullin-3. It directly binds to eukaryotic elongation factor 1A1 (eEF1A1) to promote eEF1A1 ubiquitylation and degradation and prevent translation. It is also involved in the growth suppressive effect of the phosphatase and tensin homolog (PTEN). This subfamily also includes BTB/POZ domain-containing protein 11 (BTBD11), also called ankyrin repeat and BTB/POZ domain-containing protein BTBD11. It is a BTB-domain-containing Kelch-like protein with unknown function.


Pssm-ID: 467038  Cd Length: 105  Bit Score: 58.08  E-value: 4.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004130815  15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELG 94
Cdd:cd22913     9 RSKSARCGLTFSVGRFHRWMVDSRLAKRIHEHAAVYLTACMENLLEEIFLRALASLVPKGELELTVEALEYGINNDAELW 88


                  ...
gi 1004130815  95 KLL 97
Cdd:cd22913    89 GLL 91
BUR6 COG5247
Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription];
24-92 2.53e-06

Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription];


Pssm-ID: 227572  Cd Length: 113  Bit Score: 43.41  E-value: 2.53e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1004130815  24 QFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEE 92
Cdd:COG5247    23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEK 91
HFD_DRAP1 cd22906
histone-fold domain found in Dr1-associated protein 1 (DRAP1) and similar proteins; DRAP1, ...
 25-96 4.36e-05

histone-fold domain found in Dr1-associated protein 1 (DRAP1) and similar proteins; DRAP1, also called Dr1-associated corepressor or negative cofactor 2-alpha (NC2-alpha), acts as a corepressor for Dr1 (down-regulator of transcription 1)-mediated repression of transcription. It forms a heterodimer with Dr1. The association of the Dr1/DRAP1 heterodimer with TBP results in a functional repression of both activated and basal transcription of class II genes. DRAP1 can bind to DNA on its own. It also binds TATA-binding protein-associated factor 172 (BTAF1).


Pssm-ID: 467031 [Multi-domain]  Cd Length: 75  Bit Score: 39.04  E-value: 4.36e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1004130815  25 FPVGRIARYLKK----GKyaerIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKL 96
Cdd:cd22906     4 FPAARIKKIMQSdeevGK----VAAAVPVLISKALELFLEDLLTKAAEVAKERNAKTITPSHLKQCVESEEKFDFL 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH