NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1002305035|ref|XP_015615860|]
View 

transcription termination factor MTERF8, chloroplastic [Oryza sativa Japonica Group]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 170-408 1.65e-22

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 97.67  E-value: 1.65e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 170 MLRRNNAIVRADVEKVIKPNIALFQESGLT----VRDIVKMP-----GWLFTFNPKRVEAAVERTGKLGVelassrlkym 240
Cdd:pfam02536  89 ALRSWPSILGMRVGNNIKNNVEYLRELGVPqkllARLLISRPqllalDLVYLMKPKTFEEKVEFLKELGF---------- 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 241 lsiagnitegnasarmkylsstlncSMDKVEYMVGKMPTIITLS-EEKLRSKIEFLSsTLNCCVDKIGHMVCKEPFILAI 319
Cdd:pfam02536 159 -------------------------SVEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLSEEELPRVIKKYPQILSL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 320 SEEKLRINTKFLSSaLGCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPRHYi 399
Cdd:pfam02536 213 SERTILNRVEFLLG-LGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIK- 290


                  ....*....
gi 1002305035 400 veVLLAKGL 408
Cdd:pfam02536 291 --ALVSKGL 297
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 170-408 1.65e-22

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 97.67  E-value: 1.65e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 170 MLRRNNAIVRADVEKVIKPNIALFQESGLT----VRDIVKMP-----GWLFTFNPKRVEAAVERTGKLGVelassrlkym 240
Cdd:pfam02536  89 ALRSWPSILGMRVGNNIKNNVEYLRELGVPqkllARLLISRPqllalDLVYLMKPKTFEEKVEFLKELGF---------- 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 241 lsiagnitegnasarmkylsstlncSMDKVEYMVGKMPTIITLS-EEKLRSKIEFLSsTLNCCVDKIGHMVCKEPFILAI 319
Cdd:pfam02536 159 -------------------------SVEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLSEEELPRVIKKYPQILSL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 320 SEEKLRINTKFLSSaLGCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPRHYi 399
Cdd:pfam02536 213 SERTILNRVEFLLG-LGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIK- 290


                  ....*....
gi 1002305035 400 veVLLAKGL 408
Cdd:pfam02536 291 --ALVSKGL 297
PLN03196 PLN03196
MOC1-like protein; Provisional
 273-401 2.16e-10

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 62.42  E-value: 2.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 273 MVGKMPTIITLS-EEKLRSKIEFLSSTLNCCVDKIGHMVCKEPFILAISEEKLRINTKFLSSAlGCSIDNICVMVYKMPS 351
Cdd:PLN03196  288 VIAQYPDILGLDlKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGR-GFSAQDVAKMVVRCPQ 366

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002305035 352 ILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPRHYIVE 401
Cdd:PLN03196  367 ILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 170-408 1.65e-22

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 97.67  E-value: 1.65e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 170 MLRRNNAIVRADVEKVIKPNIALFQESGLT----VRDIVKMP-----GWLFTFNPKRVEAAVERTGKLGVelassrlkym 240
Cdd:pfam02536  89 ALRSWPSILGMRVGNNIKNNVEYLRELGVPqkllARLLISRPqllalDLVYLMKPKTFEEKVEFLKELGF---------- 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 241 lsiagnitegnasarmkylsstlncSMDKVEYMVGKMPTIITLS-EEKLRSKIEFLSsTLNCCVDKIGHMVCKEPFILAI 319
Cdd:pfam02536 159 -------------------------SVEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLSEEELPRVIKKYPQILSL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 320 SEEKLRINTKFLSSaLGCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPRHYi 399
Cdd:pfam02536 213 SERTILNRVEFLLG-LGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIK- 290


                  ....*....
gi 1002305035 400 veVLLAKGL 408
Cdd:pfam02536 291 --ALVSKGL 297
PLN03196 PLN03196
MOC1-like protein; Provisional
 273-401 2.16e-10

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 62.42  E-value: 2.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002305035 273 MVGKMPTIITLS-EEKLRSKIEFLSSTLNCCVDKIGHMVCKEPFILAISEEKLRINTKFLSSAlGCSIDNICVMVYKMPS 351
Cdd:PLN03196  288 VIAQYPDILGLDlKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGR-GFSAQDVAKMVVRCPQ 366

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002305035 352 ILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPRHYIVE 401
Cdd:PLN03196  367 ILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH