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uncharacterized protein [Oryza sativa Japonica Group]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
NUMOD3 super family | cl17841 | NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. ... |
100-128 | 3.54e-05 | |||
NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. It occurs on its own or in tandem repeats in GIY-YIG (pfam01541) and HTH proteins. It constitutes a beta-turn-loop-helix subregion of the the DNA-binding domain of I-TevI homing endonuclease. The actual alignment was detected with superfamily member pfam07460: Pssm-ID: 429472 [Multi-domain] Cd Length: 37 Bit Score: 40.86 E-value: 3.54e-05
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GIY-YIG_Cterm super family | cl29963 | GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing ... |
103-210 | 6.28e-03 | |||
GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing endonucleases promote the mobility of intron or intein by recognizing and cleaving a homologous allele that lacks the sequence. They catalyze a double-strand break in the DNA near the insertion site of that element to facilitate homing at that site. Class I homing endonucleases are sorted into four families based on the presence of these motifs in their respective N-termini: LAGLIDADG, His-Cys box, HNH, and GIY-YIG. This CD contains several but not all members of the GIY-YIG family. The C-terminus of GIY-YIG is a DNA-binding domain which is separated from the N-terminus by a long, flexible linker. The DNA-binding domain consists of a minor-groove binding alpha-helix, and a helix-turn-helix. Some also contain a zinc finger (i.e. I-TevI) which is not required for DNA binding or catalysis, but is a component of the linker and directs the catalytic domain to cleave the homing site at a fixed distance from the intron insertion site. The actual alignment was detected with superfamily member cd00283: Pssm-ID: 238175 [Multi-domain] Cd Length: 113 Bit Score: 36.68 E-value: 6.28e-03
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Name | Accession | Description | Interval | E-value | |||
NUMOD3 | pfam07460 | NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. ... |
100-128 | 3.54e-05 | |||
NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. It occurs on its own or in tandem repeats in GIY-YIG (pfam01541) and HTH proteins. It constitutes a beta-turn-loop-helix subregion of the the DNA-binding domain of I-TevI homing endonuclease. Pssm-ID: 429472 [Multi-domain] Cd Length: 37 Bit Score: 40.86 E-value: 3.54e-05
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GIY-YIG_Cterm | cd00283 | GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing ... |
103-210 | 6.28e-03 | |||
GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing endonucleases promote the mobility of intron or intein by recognizing and cleaving a homologous allele that lacks the sequence. They catalyze a double-strand break in the DNA near the insertion site of that element to facilitate homing at that site. Class I homing endonucleases are sorted into four families based on the presence of these motifs in their respective N-termini: LAGLIDADG, His-Cys box, HNH, and GIY-YIG. This CD contains several but not all members of the GIY-YIG family. The C-terminus of GIY-YIG is a DNA-binding domain which is separated from the N-terminus by a long, flexible linker. The DNA-binding domain consists of a minor-groove binding alpha-helix, and a helix-turn-helix. Some also contain a zinc finger (i.e. I-TevI) which is not required for DNA binding or catalysis, but is a component of the linker and directs the catalytic domain to cleave the homing site at a fixed distance from the intron insertion site. Pssm-ID: 238175 [Multi-domain] Cd Length: 113 Bit Score: 36.68 E-value: 6.28e-03
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Name | Accession | Description | Interval | E-value | |||
NUMOD3 | pfam07460 | NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. ... |
100-128 | 3.54e-05 | |||
NUMOD3 motif; NUMOD3 is a DNA-binding motif found in homing endonucleases and related proteins. It occurs on its own or in tandem repeats in GIY-YIG (pfam01541) and HTH proteins. It constitutes a beta-turn-loop-helix subregion of the the DNA-binding domain of I-TevI homing endonuclease. Pssm-ID: 429472 [Multi-domain] Cd Length: 37 Bit Score: 40.86 E-value: 3.54e-05
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GIY-YIG_Cterm | cd00283 | GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing ... |
103-210 | 6.28e-03 | |||
GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing endonucleases promote the mobility of intron or intein by recognizing and cleaving a homologous allele that lacks the sequence. They catalyze a double-strand break in the DNA near the insertion site of that element to facilitate homing at that site. Class I homing endonucleases are sorted into four families based on the presence of these motifs in their respective N-termini: LAGLIDADG, His-Cys box, HNH, and GIY-YIG. This CD contains several but not all members of the GIY-YIG family. The C-terminus of GIY-YIG is a DNA-binding domain which is separated from the N-terminus by a long, flexible linker. The DNA-binding domain consists of a minor-groove binding alpha-helix, and a helix-turn-helix. Some also contain a zinc finger (i.e. I-TevI) which is not required for DNA binding or catalysis, but is a component of the linker and directs the catalytic domain to cleave the homing site at a fixed distance from the intron insertion site. Pssm-ID: 238175 [Multi-domain] Cd Length: 113 Bit Score: 36.68 E-value: 6.28e-03
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Blast search parameters | ||||
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