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Conserved domains on  [gi|1002301366|ref|XP_015614104|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Agenet domain-containing protein( domain architecture ID 10529033)

Agenet domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1646-1704 4.28e-09

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


:

Pssm-ID: 214798  Cd Length: 59  Bit Score: 54.25  E-value: 4.28e-09
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301366  1646 SWAIGDHVDVLIEDSWREGIISRNRDGDetKLTVQF-SAGTSDSLVVDAWNLRPSLVWND 1704
Cdd:smart00743    2 DFKEGDRVEVFSEDSWWEAVVTKVLGDG--KYLVEYkGESEPLELTVDWSDLRPHPPWVD 59
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 1561-1625 1.02e-07

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


:

Pssm-ID: 461700  Cd Length: 61  Bit Score: 50.39  E-value: 1.02e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002301366 1561 GSAVEVLVHKGESGVAWFSAKVLD-INNDSACISYDSHTEE--TGLRKEWVPLRqegekapQIRLAHP 1625
Cdd:pfam05641    1 GDKVEVLSDEEGFRGAWFRAKVIKvLKGDKYLVEYDDLLDEdgGGPLEEWVPAS-------DIRPCPP 61
 
Name Accession Description Interval E-value
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1646-1704 4.28e-09

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 54.25  E-value: 4.28e-09
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301366  1646 SWAIGDHVDVLIEDSWREGIISRNRDGDetKLTVQF-SAGTSDSLVVDAWNLRPSLVWND 1704
Cdd:smart00743    2 DFKEGDRVEVFSEDSWWEAVVTKVLGDG--KYLVEYkGESEPLELTVDWSDLRPHPPWVD 59
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 1561-1625 1.02e-07

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 50.39  E-value: 1.02e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002301366 1561 GSAVEVLVHKGESGVAWFSAKVLD-INNDSACISYDSHTEE--TGLRKEWVPLRqegekapQIRLAHP 1625
Cdd:pfam05641    1 GDKVEVLSDEEGFRGAWFRAKVIKvLKGDKYLVEYDDLLDEdgGGPLEEWVPAS-------DIRPCPP 61
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 1649-1698 2.11e-03

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 37.96  E-value: 2.11e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1002301366 1649 IGDHVDVLIEDSWREGIISRNRDGDetKLTVQFSAgTSDSLVVDAWNLRP 1698
Cdd:cd20406      1 LGDKVDAFYNGGWWPGVVTKVLEDN--RYLVYLDA-TKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1558-1611 8.81e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 36.53  E-value: 8.81e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 1002301366  1558 IEKGSAVEVLvhkgeSGVAWFSAKVLDINNDSAC-ISYDSHTEETGLRKEWVPLR 1611
Cdd:smart00743    3 FKEGDRVEVF-----SEDSWWEAVVTKVLGDGKYlVEYKGESEPLELTVDWSDLR 52
 
Name Accession Description Interval E-value
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1646-1704 4.28e-09

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 54.25  E-value: 4.28e-09
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301366  1646 SWAIGDHVDVLIEDSWREGIISRNRDGDetKLTVQF-SAGTSDSLVVDAWNLRPSLVWND 1704
Cdd:smart00743    2 DFKEGDRVEVFSEDSWWEAVVTKVLGDG--KYLVEYkGESEPLELTVDWSDLRPHPPWVD 59
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 1561-1625 1.02e-07

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 50.39  E-value: 1.02e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002301366 1561 GSAVEVLVHKGESGVAWFSAKVLD-INNDSACISYDSHTEE--TGLRKEWVPLRqegekapQIRLAHP 1625
Cdd:pfam05641    1 GDKVEVLSDEEGFRGAWFRAKVIKvLKGDKYLVEYDDLLDEdgGGPLEEWVPAS-------DIRPCPP 61
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 1649-1698 2.11e-03

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 37.96  E-value: 2.11e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1002301366 1649 IGDHVDVLIEDSWREGIISRNRDGDetKLTVQFSAgTSDSLVVDAWNLRP 1698
Cdd:cd20406      1 LGDKVDAFYNGGWWPGVVTKVLEDN--RYLVYLDA-TKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1558-1611 8.81e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 36.53  E-value: 8.81e-03
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 1002301366  1558 IEKGSAVEVLvhkgeSGVAWFSAKVLDINNDSAC-ISYDSHTEETGLRKEWVPLR 1611
Cdd:smart00743    3 FKEGDRVEVF-----SEDSWWEAVVTKVLGDGKYlVEYKGESEPLELTVDWSDLR 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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