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Conserved domains on  [gi|1002301052|ref|XP_015613962|]
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transcription factor ILI3 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03217 super family cl14736
transcription factor ATBS1; Provisional
 1-87 1.91e-14

transcription factor ATBS1; Provisional


The actual alignment was detected with superfamily member PLN03217:

Pssm-ID: 178756  Cd Length: 93  Bit Score: 62.53  E-value: 1.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301052  1 MSGRRA-------SGRITDDEINELISKLQSLLPESSRRRgATSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMATM 73
Cdd:PLN03217   1 MSGRRSrsrqssgTSRISEDQINDLIIKLQQLLPELRDSR-RSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANS 79

                         90
                 ....*....|....
gi 1002301052 74 DsnSPQADIIRSLL 87
Cdd:PLN03217  80 D--TAQAALIRSLL 91
 
Name Accession Description Interval E-value
PLN03217 PLN03217
transcription factor ATBS1; Provisional
 1-87 1.91e-14

transcription factor ATBS1; Provisional


Pssm-ID: 178756  Cd Length: 93  Bit Score: 62.53  E-value: 1.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301052  1 MSGRRA-------SGRITDDEINELISKLQSLLPESSRRRgATSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMATM 73
Cdd:PLN03217   1 MSGRRSrsrqssgTSRISEDQINDLIIKLQQLLPELRDSR-RSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANS 79

                         90
                 ....*....|....
gi 1002301052 74 DsnSPQADIIRSLL 87
Cdd:PLN03217  80 D--TAQAALIRSLL 91
bHLH_AtPRE_like cd11442
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana paclobutrazol resistance ...
 4-72 1.98e-13

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana paclobutrazol resistance (PRE) family; The PRE family includes several bHLH transcription factors from Arabidopsis thaliana, such as PRE1-6. PRE1 (also termed AtbHLH136, or protein banquo 1), PRE2 (also termed AtbHLH134, or protein banquo 2, or EN 52), PRE4 (also termed AtbHLH161, or protein banquo 3), and PRE5 (also termed AtbHLH164) are atypical and probable non DNA-binding bHLH transcription factors that integrate multiple signaling pathways to regulate cell elongation and plant development. PRE3 (also termed AtbHLH135, or protein activation-tagged BRI1 suppressor 1, or ATBS1, or protein target of MOOPTEROS 7, or EN 67) is an atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. It promotes the correct definition of the hypophysis cell division plane. PRE5 (also termed AtbHLH163, or protein KIDARI) is an atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance.


Pssm-ID: 381448  Cd Length: 65  Bit Score: 58.85  E-value: 1.98e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002301052  4 RRASGRITDDEINELISKLQSLLPESSRRrgatSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMAT 72
Cdd:cd11442    1 RSSSSRISDDQKNDLYSRLRALLPSIATS----DKVSKATVLEEACNYIRNLHREVDDLSERLSRLLTS 65
 
Name Accession Description Interval E-value
PLN03217 PLN03217
transcription factor ATBS1; Provisional
 1-87 1.91e-14

transcription factor ATBS1; Provisional


Pssm-ID: 178756  Cd Length: 93  Bit Score: 62.53  E-value: 1.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002301052  1 MSGRRA-------SGRITDDEINELISKLQSLLPESSRRRgATSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMATM 73
Cdd:PLN03217   1 MSGRRSrsrqssgTSRISEDQINDLIIKLQQLLPELRDSR-RSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANS 79

                         90
                 ....*....|....
gi 1002301052 74 DsnSPQADIIRSLL 87
Cdd:PLN03217  80 D--TAQAALIRSLL 91
bHLH_AtPRE_like cd11442
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana paclobutrazol resistance ...
 4-72 1.98e-13

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana paclobutrazol resistance (PRE) family; The PRE family includes several bHLH transcription factors from Arabidopsis thaliana, such as PRE1-6. PRE1 (also termed AtbHLH136, or protein banquo 1), PRE2 (also termed AtbHLH134, or protein banquo 2, or EN 52), PRE4 (also termed AtbHLH161, or protein banquo 3), and PRE5 (also termed AtbHLH164) are atypical and probable non DNA-binding bHLH transcription factors that integrate multiple signaling pathways to regulate cell elongation and plant development. PRE3 (also termed AtbHLH135, or protein activation-tagged BRI1 suppressor 1, or ATBS1, or protein target of MOOPTEROS 7, or EN 67) is an atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. It promotes the correct definition of the hypophysis cell division plane. PRE5 (also termed AtbHLH163, or protein KIDARI) is an atypical and probable non DNA-binding bHLH transcription factor that regulates light-mediated responses in day light conditions by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance.


Pssm-ID: 381448  Cd Length: 65  Bit Score: 58.85  E-value: 1.98e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002301052  4 RRASGRITDDEINELISKLQSLLPESSRRrgatSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMAT 72
Cdd:cd11442    1 RSSSSRISDDQKNDLYSRLRALLPSIATS----DKVSKATVLEEACNYIRNLHREVDDLSERLSRLLTS 65
bHLHzip_USF cd11396
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in upstream stimulatory factors, USF1, ...
 13-55 2.92e-03

basic Helix-Loop-Helix-zipper (bHLHzip) domain found in upstream stimulatory factors, USF1, USF2 and similar proteins; Upstream stimulatory factor 1 and 2 (USF-1 and USF-2) are members of bHLHzip transcription factor family. USFs are ubiquitously expressed and key regulators of a wide number of gene regulation networks, including the stress and immune responses, cell cycle and proliferation, lipid and glucid metabolism. USFs recruit chromatin remodeling enzymes and interact with co-activators and the members of the transcription pre-initiation complex. USFs interact with high affinity to E-box regulatory elements.


Pssm-ID: 381402  Cd Length: 58  Bit Score: 33.04  E-value: 2.92e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1002301052 13 DEINELISKLQSLLPESSRRRGATSRSPATkLLKEMCSYIKSL 55
Cdd:cd11396   11 DKINNWIVKLAKIVPDCEKDNSKQGQSKGG-ILSKACDYIQEL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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