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Conserved domains on  [gi|1002280910|ref|XP_015644753|]
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importin subunit alpha-1a-like isoform X1 [Oryza sativa Japonica Group]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 1000979)

armadillo/beta-catenin-like repeat-containing protein similar to Saccharomyces cerevisiae vacuolar protein 8 that functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP1 super family cl34886
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
113-546 4.60e-132

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5064:

Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 395.80  E-value: 4.60e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 113 LSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHPQLQMEAAWVLTNIAA--SDYTLL 190
Cdd:COG5064    73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASgtTQQTKV 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 191 VAECGAVPRLVELLESANANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLLAQFREG-MKVPVLRTATWALSNLCFGK 269
Cdd:COG5064   153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGK 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 270 --LPAEVQVKPILDIISQLIHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLLMHASANILLPVITVLARI 347
Cdd:COG5064   233 npPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 348 SSGDDAQVQVLVENDILNYLAPLLArNYPKSIKKQACLIVSNISTGSKDNIQAVIDADVISPLIFLLKTSEKDIKEEAAW 427
Cdd:COG5064   313 VTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 428 AISNAASGGSN--DQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDK 505
Cdd:COG5064   392 AISNATSGGLNrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDA 471

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1002280910 506 LEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDS 546
Cdd:COG5064   472 IHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNT 512
IBB super family cl03339
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 39-132 6.47e-04

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


The actual alignment was detected with superfamily member pfam01749:

Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 38.67  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  39 RRSNRDAGLFKRRRDEPtptpipparAATPSSQADDvpttttatsppssapssppssppaesvpptaadSELEGLSEMVE 118
Cdd:pfam01749  27 RKQKREEQLLKRRNVGA---------PSSSSSSAES---------------------------------QLLESLPEMVQ 64

                          90
                  ....*....|....
gi 1002280910 119 KVWSDDTTSQLEAT 132
Cdd:pfam01749  65 GVNSDDPELQLEAT 78
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
113-546 4.60e-132

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 395.80  E-value: 4.60e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 113 LSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHPQLQMEAAWVLTNIAA--SDYTLL 190
Cdd:COG5064    73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASgtTQQTKV 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 191 VAECGAVPRLVELLESANANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLLAQFREG-MKVPVLRTATWALSNLCFGK 269
Cdd:COG5064   153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGK 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 270 --LPAEVQVKPILDIISQLIHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLLMHASANILLPVITVLARI 347
Cdd:COG5064   233 npPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 348 SSGDDAQVQVLVENDILNYLAPLLArNYPKSIKKQACLIVSNISTGSKDNIQAVIDADVISPLIFLLKTSEKDIKEEAAW 427
Cdd:COG5064   313 VTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 428 AISNAASGGSN--DQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDK 505
Cdd:COG5064   392 AISNATSGGLNrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDA 471

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1002280910 506 LEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDS 546
Cdd:COG5064   472 IHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNT 512
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 495-543 1.66e-12

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 62.22  E-value: 1.66e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1002280910 495 QFILECGGLDKLEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTS 543
Cdd:pfam16186   1 LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEEDDENLAPE 49
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 185-224 1.10e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.50  E-value: 1.10e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1002280910  185 SDYTLLVAECGAVPRLVELLESANANIRHQAIWALGNIAA 224
Cdd:smart00185   2 DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 195-329 6.11e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.17  E-value: 6.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  195 GAVPRLVELLESANANIRH---QAIWALGNIAADVPTCREIVLDHGAVTPLLAQFREGMKV--PVLRTATWALSNLCF-- 267
Cdd:PLN03200    99 GCIPPLLSLLKSGSAEAQKaaaEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQdkVVEGLLTGALRNLCGst 178

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002280910  268 -GKLPAEVQVKPIlDIISQLIHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLL 329
Cdd:PLN03200   179 dGFWSATLEAGGV-DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 39-132 6.47e-04

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 38.67  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  39 RRSNRDAGLFKRRRDEPtptpipparAATPSSQADDvpttttatsppssapssppssppaesvpptaadSELEGLSEMVE 118
Cdd:pfam01749  27 RKQKREEQLLKRRNVGA---------PSSSSSSAES---------------------------------QLLESLPEMVQ 64

                          90
                  ....*....|....
gi 1002280910 119 KVWSDDTTSQLEAT 132
Cdd:pfam01749  65 GVNSDDPELQLEAT 78
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
113-546 4.60e-132

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 395.80  E-value: 4.60e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 113 LSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHPQLQMEAAWVLTNIAA--SDYTLL 190
Cdd:COG5064    73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASgtTQQTKV 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 191 VAECGAVPRLVELLESANANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLLAQFREG-MKVPVLRTATWALSNLCFGK 269
Cdd:COG5064   153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSaIHISMLRNATWTLSNLCRGK 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 270 --LPAEVQVKPILDIISQLIHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLLMHASANILLPVITVLARI 347
Cdd:COG5064   233 npPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 348 SSGDDAQVQVLVENDILNYLAPLLArNYPKSIKKQACLIVSNISTGSKDNIQAVIDADVISPLIFLLKTSEKDIKEEAAW 427
Cdd:COG5064   313 VTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 428 AISNAASGGSN--DQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDK 505
Cdd:COG5064   392 AISNATSGGLNrpDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDA 471

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1002280910 506 LEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDS 546
Cdd:COG5064   472 IHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNT 512
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 495-543 1.66e-12

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 62.22  E-value: 1.66e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1002280910 495 QFILECGGLDKLEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTS 543
Cdd:pfam16186   1 LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEEDDENLAPE 49
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 394-434 1.80e-08

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 50.53  E-value: 1.80e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1002280910 394 SKDNIQAVIDADVISPLIFLLKTSEKDIKEEAAWAISNAAS 434
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 185-224 2.23e-08

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 50.15  E-value: 2.23e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002280910 185 SDYTLLVAECGAVPRLVELLESANANIRHQAIWALGNIAA 224
Cdd:pfam00514   2 PENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 185-224 1.10e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.50  E-value: 1.10e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1002280910  185 SDYTLLVAECGAVPRLVELLESANANIRHQAIWALGNIAA 224
Cdd:smart00185   2 DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 169-222 5.43e-06

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 43.89  E-value: 5.43e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002280910 169 PQLQMEAAWVLTNIAASDYTLLVAEC-GAVPRLVELLESANANIRHQAIWALGNI 222
Cdd:pfam13513   1 WRVREAAALALGSLAEGGPDLLAPAVpELLPALLPLLNDDSDLVREAAAWALGRL 55
HEAT COG1413
HEAT repeat [General function prediction only];
153-302 6.88e-06

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 45.78  E-value: 6.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 153 ADVLPRFSDFLsRHEHPQLQMEAAWVLTNIAASDytllvaecgAVPRLVELLESANANIRHQAIWALGNIAADvptcrei 232
Cdd:COG1413    15 PAAVPALIAAL-ADEDPDVRAAAARALGRLGDPR---------AVPALLEALKDPDPEVRAAAAEALGRIGDP------- 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 233 vldhgAVTPLLAQFREGMKVPVLRTATWALsnlcfgklpAEVQVKPILDIISQLIHSVDEKILGDACWAL 302
Cdd:COG1413    78 -----EAVPALIAALKDEDPEVRRAAAEAL---------GRLGDPAAVPALLEALKDPDWEVRRAAARAL 133
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 394-434 7.66e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 42.80  E-value: 7.66e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1002280910  394 SKDNIQAVIDADVISPLIFLLKTSEKDIKEEAAWAISNAAS 434
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 156-263 7.75e-06

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 44.25  E-value: 7.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910 156 LPRFSDFLSRHEHPQLQMEAAWVLTNIAASDytllvaecgAVPRLVELLESANANIRHQAIWALGNIAadvptcreivlD 235
Cdd:pfam13646   1 LPALLQALLRDPDPEVRAAAIRALGRIGDPE---------AVPALLELLKDEDPAVRRAAAEALGKIG-----------D 60

                          90       100
                  ....*....|....*....|....*...
gi 1002280910 236 HGAVTPLLAQFREGMKVPVLRTATWALS 263
Cdd:pfam13646  61 PEALPALLELLRDDDDDVVRAAAAEALA 88
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 144-184 5.00e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 37.82  E-value: 5.00e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1002280910 144 NPTVIKIIRADVLPRFSDFLSrHEHPQLQMEAAWVLTNIAA 184
Cdd:pfam00514   2 PENKQAVIEAGAVPPLVRLLS-SPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 195-329 6.11e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.17  E-value: 6.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  195 GAVPRLVELLESANANIRH---QAIWALGNIAADVPTCREIVLDHGAVTPLLAQFREGMKV--PVLRTATWALSNLCF-- 267
Cdd:PLN03200    99 GCIPPLLSLLKSGSAEAQKaaaEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQdkVVEGLLTGALRNLCGst 178

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002280910  268 -GKLPAEVQVKPIlDIISQLIHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLL 329
Cdd:PLN03200   179 dGFWSATLEAGGV-DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 39-132 6.47e-04

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 38.67  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  39 RRSNRDAGLFKRRRDEPtptpipparAATPSSQADDvpttttatsppssapssppssppaesvpptaadSELEGLSEMVE 118
Cdd:pfam01749  27 RKQKREEQLLKRRNVGA---------PSSSSSSAES---------------------------------QLLESLPEMVQ 64

                          90
                  ....*....|....
gi 1002280910 119 KVWSDDTTSQLEAT 132
Cdd:pfam01749  65 GVNSDDPELQLEAT 78
HEAT COG1413
HEAT repeat [General function prediction only];
163-223 7.77e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 40.00  E-value: 7.77e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002280910 163 LSRHEHPQLQMEAAWVLTNIAASDytllvaecgAVPRLVELLESANANIRHQAIWALGNIA 223
Cdd:COG1413    86 ALKDEDPEVRRAAAEALGRLGDPA---------AVPALLEALKDPDWEVRRAAARALGRLG 137
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 168-331 1.06e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 42.01  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  168 HPQLQMEAAWVLTNI--AASDYTLLVAECGAVPRLVELLESAN-ANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLLA 244
Cdd:PLN03200   202 NSDAQANAASLLARLmmAFESSISKVLDAGAVKQLLKLLGQGNeVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002280910  245 -------QFREGMKVPVLRT-ATWALSNLCfGKLPAevqvkpILDIISQLIHS--VDEKIlGDACWALCY---ICDGvSD 311
Cdd:PLN03200   282 atvapskEFMQGEFAQALQEnAMGALANIC-GGMSA------LILYLGELSESprSPAPI-ADTLGALAYalmVFDS-SA 352

                          170       180
                   ....*....|....*....|.
gi 1002280910  312 GIQHVLDAGACPQ-LVNLLMH 331
Cdd:PLN03200   353 ESTRAFDPTVIEQiLVKLLKP 373
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 437-475 1.12e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 36.64  E-value: 1.12e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1002280910  437 SNDQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNI 475
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 310-349 1.80e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 1.80e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002280910 310 SDGIQHVLDAGACPQLVNLLMHASANILLPVITVLARISS 349
Cdd:pfam00514   2 PENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 229-266 2.59e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.89  E-value: 2.59e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1002280910 229 CREIVLDHGAVTPLLAQFREgMKVPVLRTATWALSNLC 266
Cdd:pfam00514   4 NKQAVIEAGAVPPLVRLLSS-PDEEVQEEAAWALSNLA 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 437-475 4.37e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.12  E-value: 4.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1002280910 437 SNDQIQYLVSRGCLEPLCNVLTYQDADLVYACLEGLQNI 475
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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