NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1002278932|ref|XP_015643780|]
View 

uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10650940)

zinc finger Ran-binding domain-containing protein; similar to human zinc finger Ran-binding domain-containing protein 2 (ZRANB2) which is a splice factor required for alternative splicing of TRA2B/SFRS10 transcripts and whose zinc finger domains bind single-stranded RNA, and to the zinc finger domain of human TAK1-binding protein 2 (TAB2) which binds Lys 63-linked polyubiquitin chains

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 258-282 1.02e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 41.92  E-value: 1.02e-05
                           10        20
                   ....*....|....*....|....*
gi 1002278932  258 GDWICqnPNCGNLNFARRTHCNNCN 282
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 258-282 1.02e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 41.92  E-value: 1.02e-05
                           10        20
                   ....*....|....*....|....*
gi 1002278932  258 GDWICqnPNCGNLNFARRTHCNNCN 282
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACG 23
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
256-281 1.92e-05

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.57  E-value: 1.92e-05
                          10        20
                  ....*....|....*....|....*.
gi 1002278932 256 REGDWICqnPNCGNLNFARRTHCNNC 281
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVAC 24
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 258-282 1.02e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 41.92  E-value: 1.02e-05
                           10        20
                   ....*....|....*....|....*
gi 1002278932  258 GDWICqnPNCGNLNFARRTHCNNCN 282
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACG 23
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
256-281 1.92e-05

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.57  E-value: 1.92e-05
                          10        20
                  ....*....|....*....|....*.
gi 1002278932 256 REGDWICqnPNCGNLNFARRTHCNNC 281
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVAC 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH