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Conserved domains on  [gi|1002276364|ref|XP_015642526|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

50S ribosomal protein L30( domain architecture ID 10018795)

50S ribosomal protein L30 binds the 23SrRNA as well as the 5S rRNA.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 20-70 3.46e-13

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


:

Pssm-ID: 130375  Cd Length: 55  Bit Score: 59.25  E-value: 3.46e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:TIGR01308   4 TLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVE 54
 
Name Accession Description Interval E-value
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 20-70 3.46e-13

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 59.25  E-value: 3.46e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:TIGR01308   4 TLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVE 54
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 20-70 4.53e-11

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 53.56  E-value: 4.53e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:cd00355     3 TRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 20-70 1.30e-10

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 52.35  E-value: 1.30e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:COG1841     7 TLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVE 57
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 20-70 4.99e-10

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 50.87  E-value: 4.99e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:PRK05611    7 TLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVE 57
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 20-67 2.48e-09

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 48.85  E-value: 2.48e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLV 67
Cdd:pfam00327   4 TRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
 
Name Accession Description Interval E-value
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 20-70 3.46e-13

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 59.25  E-value: 3.46e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:TIGR01308   4 TLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVE 54
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 20-70 4.53e-11

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 53.56  E-value: 4.53e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:cd00355     3 TRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 20-70 1.30e-10

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 52.35  E-value: 1.30e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:COG1841     7 TLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVE 57
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 20-70 4.99e-10

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 50.87  E-value: 4.99e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLVVVE 70
Cdd:PRK05611    7 TLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVE 57
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 20-67 2.48e-09

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 48.85  E-value: 2.48e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1002276364  20 KLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVKCLV 67
Cdd:pfam00327   4 TRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
rpl30p PRK06049
50S ribosomal protein L30P; Reviewed
 22-64 3.37e-03

50S ribosomal protein L30P; Reviewed


Pssm-ID: 235683  Cd Length: 154  Bit Score: 34.78  E-value: 3.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002276364  22 VRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGMLTQVK 64
Cdd:PRK06049    8 IRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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