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Conserved domains on  [gi|1002275142|ref|XP_015641885|]
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RNA-binding protein involved in heterochromatin assembly dri1 [Oryza sativa Japonica Group]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10651028)

zinc finger Ran-binding domain-containing protein similar to Homo sapiens zinc finger Ran-binding domain-containing protein 2 (ZRANB2) that regulates alternative splicing via a direct interaction with pre-mRNA at sites that resemble the consensus 5' splice site

CATH:  2.20.28.140
Gene Ontology:  GO:0008270|GO:0003723
PubMed:  17210253|11179890|12665246

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
110-140 2.35e-04

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.56  E-value: 2.35e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002275142 110 KAGDWICtrPGCNVHNFASRIECYRCNAPRE 140
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 8-32 4.37e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.76  E-value: 4.37e-04
                           10        20
                   ....*....|....*....|....*
gi 1002275142    8 GDWNCKSCQHLNFSRRDYCQRCHTP 32
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 56-78 5.49e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.67  E-value: 5.49e-03
                           10        20
                   ....*....|....*....|....
gi 1002275142   56 GDWYCN-CGYHNFASRASCFKCGA 78
Cdd:smart00547   1 GDWECPaCTFLNFASRSKCFACGA 24
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
110-140 2.35e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.56  E-value: 2.35e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002275142 110 KAGDWICtrPGCNVHNFASRIECYRCNAPRE 140
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 8-32 4.37e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.76  E-value: 4.37e-04
                           10        20
                   ....*....|....*....|....*
gi 1002275142    8 GDWNCKSCQHLNFSRRDYCQRCHTP 32
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 112-138 7.71e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.99  E-value: 7.71e-04
                           10        20
                   ....*....|....*....|....*..
gi 1002275142  112 GDWICtrPGCNVHNFASRIECYRCNAP 138
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACGAP 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 56-78 5.49e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.67  E-value: 5.49e-03
                           10        20
                   ....*....|....*....|....
gi 1002275142   56 GDWYCN-CGYHNFASRASCFKCGA 78
Cdd:smart00547   1 GDWECPaCTFLNFASRSKCFACGA 24
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
110-140 2.35e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.56  E-value: 2.35e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1002275142 110 KAGDWICtrPGCNVHNFASRIECYRCNAPRE 140
Cdd:pfam00641   1 REGDWDC--SKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 8-32 4.37e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.76  E-value: 4.37e-04
                           10        20
                   ....*....|....*....|....*
gi 1002275142    8 GDWNCKSCQHLNFSRRDYCQRCHTP 32
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 112-138 7.71e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.99  E-value: 7.71e-04
                           10        20
                   ....*....|....*....|....*..
gi 1002275142  112 GDWICtrPGCNVHNFASRIECYRCNAP 138
Cdd:smart00547   1 GDWEC--PACTFLNFASRSKCFACGAP 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 56-78 5.49e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.67  E-value: 5.49e-03
                           10        20
                   ....*....|....*....|....
gi 1002275142   56 GDWYCN-CGYHNFASRASCFKCGA 78
Cdd:smart00547   1 GDWECPaCTFLNFASRSKCFACGA 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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