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Conserved domains on  [gi|1002255304|ref|XP_015631928|]
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protein ALWAYS EARLY 3 isoform X4 [Oryza sativa Japonica Group]

Protein Classification

SANT and DIRP domain-containing protein( domain architecture ID 11088992)

SANT and DIRP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DIRP pfam06584
DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related ...
 626-727 1.21e-44

DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of fruit fly and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.


:

Pssm-ID: 461955  Cd Length: 108  Bit Score: 156.61  E-value: 1.21e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002255304  626 WFYSAIDFPWFE-KSEFVEYLNHVKLG-HVPRLTRVEWGVIRSSLGKPRRLSKQFLQEEREKLAQYRESVRQHY----AE 699
Cdd:pfam06584    1 WFYSNIDKPLFEsKNDFEEYLNESFPGlKTRRLTRAEWQKIRRSMGKPRRFSAAFFEEEREELERKREKIRQLQqrklNI 80

                           90       100
                   ....*....|....*....|....*...
gi 1002255304  700 LRSGVREGLPTDLARPLGVGQRVIACHP 727
Cdd:pfam06584   81 DLSGLLEDLPKDIPLPLVVGTKVTARLP 108
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 47-89 1.28e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


:

Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 40.56  E-value: 1.28e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1002255304   47 WSKDELERFYGSYRKYGKDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:pfam00249    4 WTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
 
Name Accession Description Interval E-value
DIRP pfam06584
DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related ...
 626-727 1.21e-44

DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of fruit fly and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.


Pssm-ID: 461955  Cd Length: 108  Bit Score: 156.61  E-value: 1.21e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002255304  626 WFYSAIDFPWFE-KSEFVEYLNHVKLG-HVPRLTRVEWGVIRSSLGKPRRLSKQFLQEEREKLAQYRESVRQHY----AE 699
Cdd:pfam06584    1 WFYSNIDKPLFEsKNDFEEYLNESFPGlKTRRLTRAEWQKIRRSMGKPRRFSAAFFEEEREELERKREKIRQLQqrklNI 80

                           90       100
                   ....*....|....*....|....*...
gi 1002255304  700 LRSGVREGLPTDLARPLGVGQRVIACHP 727
Cdd:pfam06584   81 DLSGLLEDLPKDIPLPLVVGTKVTARLP 108
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 47-89 1.28e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 40.56  E-value: 1.28e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1002255304   47 WSKDELERFYGSYRKYGKDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:pfam00249    4 WTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 47-89 1.46e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 40.25  E-value: 1.46e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1002255304   47 WSKDELERFYGSYRKYG-KDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:cd00167      2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
47-89 1.72e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.59  E-value: 1.72e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 1002255304    47 WSKDELERFYGSYRKYG-KDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:smart00717    4 WTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLL 47
 
Name Accession Description Interval E-value
DIRP pfam06584
DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related ...
 626-727 1.21e-44

DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of fruit fly and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.


Pssm-ID: 461955  Cd Length: 108  Bit Score: 156.61  E-value: 1.21e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002255304  626 WFYSAIDFPWFE-KSEFVEYLNHVKLG-HVPRLTRVEWGVIRSSLGKPRRLSKQFLQEEREKLAQYRESVRQHY----AE 699
Cdd:pfam06584    1 WFYSNIDKPLFEsKNDFEEYLNESFPGlKTRRLTRAEWQKIRRSMGKPRRFSAAFFEEEREELERKREKIRQLQqrklNI 80

                           90       100
                   ....*....|....*....|....*...
gi 1002255304  700 LRSGVREGLPTDLARPLGVGQRVIACHP 727
Cdd:pfam06584   81 DLSGLLEDLPKDIPLPLVVGTKVTARLP 108
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 47-89 1.28e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 40.56  E-value: 1.28e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1002255304   47 WSKDELERFYGSYRKYGKDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:pfam00249    4 WTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 47-89 1.46e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 40.25  E-value: 1.46e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1002255304   47 WSKDELERFYGSYRKYG-KDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:cd00167      2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
47-89 1.72e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.59  E-value: 1.72e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 1002255304    47 WSKDELERFYGSYRKYG-KDWRKVASSIRDRTSEMVEALYNMNK 89
Cdd:smart00717    4 WTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLL 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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