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Conserved domains on  [gi|1002238969|ref|XP_015623713|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 53-117 2.39e-35

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


:

Pssm-ID: 460342  Cd Length: 67  Bit Score: 116.32  E-value: 2.39e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 53-117 2.39e-35

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 116.32  E-value: 2.39e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 53-118 6.19e-33

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 110.21  E-value: 6.19e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:COG0759     6 RLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
PRK14370 PRK14370
hypothetical protein; Provisional
 53-116 7.26e-23

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 86.06  E-value: 7.26e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14370   11 KLLLAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGID 74
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 56-118 1.23e-20

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 79.04  E-value: 1.23e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:TIGR00278   2 IALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPV 64
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 53-117 2.39e-35

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 116.32  E-value: 2.39e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 53-118 6.19e-33

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 110.21  E-value: 6.19e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:COG0759     6 RLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
PRK14370 PRK14370
hypothetical protein; Provisional
 53-116 7.26e-23

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 86.06  E-value: 7.26e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14370   11 KLLLAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGID 74
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
58-117 1.29e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 85.08  E-value: 1.29e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002238969  58 MLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14386    8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDP 67
PRK14391 PRK14391
membrane protein insertion efficiency factor YidD;
56-118 2.50e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172867  Cd Length: 84  Bit Score: 83.93  E-value: 2.50e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLgGHGYDPP 118
Cdd:PRK14391    6 IQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPL-SQGFDDP 67
PRK14387 PRK14387
membrane protein insertion efficiency factor YidD;
59-118 7.57e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184655  Cd Length: 84  Bit Score: 82.68  E-value: 7.57e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002238969  59 LKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:PRK14387   12 LRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYDPP 71
PRK14382 PRK14382
hypothetical protein; Provisional
 56-118 2.01e-21

hypothetical protein; Provisional


Pssm-ID: 172858  Cd Length: 68  Bit Score: 80.97  E-value: 2.01e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:PRK14382    6 IKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGVDYP 68
PRK14373 PRK14373
hypothetical protein; Provisional
 47-117 2.38e-21

hypothetical protein; Provisional


Pssm-ID: 172849  Cd Length: 73  Bit Score: 80.82  E-value: 2.38e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002238969  47 VNDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14373    1 MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGHDP 71
PRK14369 PRK14369
membrane protein insertion efficiency factor YidD;
56-119 3.01e-21

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184650  Cd Length: 119  Bit Score: 82.03  E-value: 3.01e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP--LGGHGYDPPR 119
Cdd:PRK14369    6 LALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPwsLGGVDHVPPR 71
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 56-118 1.23e-20

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 79.04  E-value: 1.23e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:TIGR00278   2 IALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPV 64
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
58-117 2.55e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 76.15  E-value: 2.55e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002238969  58 MLKFYKREISPLLPS-SCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14383   11 AVRWYQRVLSPRKPApTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDP 71
PRK14378 PRK14378
membrane protein insertion efficiency factor YidD;
53-116 8.99e-17

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237696  Cd Length: 103  Bit Score: 69.98  E-value: 8.99e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002238969  53 NVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14378   14 NAAIAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWAEGGID 77
PRK14380 PRK14380
hypothetical protein; Provisional
 59-117 2.96e-16

hypothetical protein; Provisional


Pssm-ID: 184654  Cd Length: 81  Bit Score: 68.05  E-value: 2.96e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002238969  59 LKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14380   16 IKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDP 74
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
58-121 3.89e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 68.31  E-value: 3.89e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002238969  58 MLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP-PRWF 121
Cdd:PRK14379    8 LVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPvPDYF 72
PRK14389 PRK14389
membrane protein insertion efficiency factor YidD;
56-117 5.80e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184656  Cd Length: 98  Bit Score: 68.04  E-value: 5.80e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002238969  56 LSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14389    7 MALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGHDP 68
PRK14371 PRK14371
hypothetical protein; Provisional
 54-117 6.24e-15

hypothetical protein; Provisional


Pssm-ID: 172847  Cd Length: 81  Bit Score: 64.95  E-value: 6.24e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002238969  54 VALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14371    4 LALVPIQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWNPGGYDP 67
PRK14388 PRK14388
membrane protein insertion efficiency factor YidD;
54-116 1.63e-14

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172864  Cd Length: 82  Bit Score: 63.76  E-value: 1.63e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002238969  54 VALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14388    4 ILLLLLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYD 66
PRK14372 PRK14372
membrane protein insertion efficiency factor YidD;
59-120 5.56e-14

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172848  Cd Length: 97  Bit Score: 62.65  E-value: 5.56e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002238969  59 LKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD--PPRW 120
Cdd:PRK14372    5 IRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGIDdvPQRY 68
PRK14381 PRK14381
membrane protein insertion efficiency factor YidD;
47-116 5.07e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172857  Cd Length: 103  Bit Score: 60.64  E-value: 5.07e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002238969  47 VNDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14381    7 LQNLPVRICLGLIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRIGKCGPWHPGGID 76
PRK14375 PRK14375
membrane protein insertion efficiency factor YidD;
57-118 8.69e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172851  Cd Length: 70  Bit Score: 58.85  E-value: 8.69e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002238969  57 SMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPP 118
Cdd:PRK14375    1 MLINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLSKRDYYDL 62
PRK14384 PRK14384
hypothetical protein; Provisional
 72-116 1.82e-11

hypothetical protein; Provisional


Pssm-ID: 172860  Cd Length: 56  Bit Score: 55.45  E-value: 1.82e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1002238969  72 SSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14384    2 SSCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVD 46
PRK14377 PRK14377
membrane protein insertion efficiency factor YidD;
58-116 3.55e-11

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172853  Cd Length: 104  Bit Score: 55.93  E-value: 3.55e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1002238969  58 MLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYD 116
Cdd:PRK14377   13 LVHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGID 71
PRK14390 PRK14390
hypothetical protein; Provisional
 58-117 6.37e-11

hypothetical protein; Provisional


Pssm-ID: 172866  Cd Length: 63  Bit Score: 54.24  E-value: 6.37e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002238969  58 MLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14390    1 MISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDP 60
PRK14376 PRK14376
membrane protein insertion efficiency factor YidD;
74-117 2.97e-09

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237695  Cd Length: 176  Bit Score: 52.26  E-value: 2.97e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1002238969  74 CRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDP 117
Cdd:PRK14376   64 CRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYDP 107
PRK14385 PRK14385
membrane protein insertion efficiency factor YidD;
58-117 3.25e-09

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172861  Cd Length: 96  Bit Score: 50.59  E-value: 3.25e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002238969  58 MLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL--GGHGYDP 117
Cdd:PRK14385   17 LIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALfkGGNESLP 78
PRK14374 PRK14374
membrane protein insertion efficiency factor YidD;
54-119 5.78e-05

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237694  Cd Length: 118  Bit Score: 39.67  E-value: 5.78e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002238969  54 VALSMLKFYKREISPLLPSSCRYVPTCSEYSMQ--AYKKYGVAKGTIltAWRLCRCNPL--GGHGYDPPR 119
Cdd:PRK14374   12 IFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWllCFENPLSAMGKI--AIRILSCNPFcsGGIAYPTTR 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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