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Conserved domains on  [gi|1002224465|ref|XP_015628244|]
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LOB domain-containing protein 40 [Oryza sativa Japonica Group]

Protein Classification

LOB domain-containing protein( domain architecture ID 10505015)

LOB (Lateral Organ Boundaries) domain-containing protein plays a potential role in lateral organ development of plants

PubMed:  12068116

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-104 1.79e-36

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


:

Pssm-ID: 460843  Cd Length: 99  Bit Score: 126.84  E-value: 1.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224465   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|.
gi 1002224465  84 SVGLLWSGQWQACQAAVEAVL 104
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELAL 96
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-104 1.79e-36

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 126.84  E-value: 1.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224465   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|.
gi 1002224465  84 SVGLLWSGQWQACQAAVEAVL 104
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELAL 96
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-104 1.79e-36

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 126.84  E-value: 1.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002224465   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|.
gi 1002224465  84 SVGLLWSGQWQACQAAVEAVL 104
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELAL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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