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Conserved domains on  [gi|1002160251|ref|YP_009230395|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Ara ararauna]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 561.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   6 TSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  86 ALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 166 GSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 246 TGLLFLNPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160251 326 L 326
Cdd:MTH00111  323 L 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 561.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   6 TSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  86 ALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 166 GSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 246 TGLLFLNPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160251 326 L 326
Cdd:MTH00111  323 L 323
NADHdh pfam00146
NADH dehydrogenase;
15-306 2.23e-110

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 322.89  E-value: 2.23e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  15 LAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLALTIW 94
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  95 AP--LPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYTLTA 172
Cdd:pfam00146  83 AVipFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 173 LIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLLFLn 252
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002160251 253 pSALNPPLELFPPV-LATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 242 -GGWLGPFPLPGLLwFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 4.59e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 302.82  E-value: 4.59e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   1 MTWPNTS-LTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLF 79
Cdd:COG1005     1 MSLLLAPlLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  80 LTTPMLALLLALTIWAP--LPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAII 157
Cdd:COG1005    81 LLAPILAFIPALLAFAVipFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 158 LLSVVMLSGSYTLTALIITQE-PLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEY 236
Cdd:COG1005   161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002160251 237 ANIMLMNTLTGLLFL---NPSALNPPLELFPPVL--ATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   241 ANMFLVSALATTLFLggwLGPFPILPLGGLPGILwfLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 561.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   6 TSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPML 85
Cdd:MTH00111    3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  86 ALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLS 165
Cdd:MTH00111   83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 166 GSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111  163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 246 TGLLFLNPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00111  243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                  .
gi 1002160251 326 L 326
Cdd:MTH00111  323 L 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 5-326 3.57e-172

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 480.26  E-value: 3.57e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   5 NTSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPM 84
Cdd:MTH00134    3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  85 LALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVML 164
Cdd:MTH00134   83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 165 SGSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00134  163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 245 LTGLLFLNPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00134  243 LSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322


                  ..
gi 1002160251 325 YL 326
Cdd:MTH00134  323 QL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-324 2.06e-169

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 473.34  E-value: 2.06e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   5 NTSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPM 84
Cdd:MTH00071    2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  85 LALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVML 164
Cdd:MTH00071   82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 165 SGSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 245 LTGLLFLNPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00071  242 LSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-326 2.78e-168

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 470.26  E-value: 2.78e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  10 YLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLL 89
Cdd:MTH00104    2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  90 ALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYT 169
Cdd:MTH00104   82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 170 LTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLL 249
Cdd:MTH00104  162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002160251 250 FLNPSaLNPPL-ELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00104  242 FLGAF-HNPYMpELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 8-324 3.09e-139

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 396.59  E-value: 3.09e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   8 LTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLAL 87
Cdd:MTH00218    2 LLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  88 LLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGS 167
Cdd:MTH00218   82 TLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 168 YTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTG 247
Cdd:MTH00218  162 FSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSV 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002160251 248 LLFLNPSALNPPLELfppvlatKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00218  242 ILFLGTSLTTINLML-------KATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 5-326 9.30e-137

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 390.49  E-value: 9.30e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   5 NTSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPM 84
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  85 LALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVML 164
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 165 SGSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 245 LTGLLFLN-PSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLP 323
Cdd:MTH00040  241 LSVILFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                  ...
gi 1002160251 324 PYL 326
Cdd:MTH00040  321 PNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 11-321 1.00e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 324.00  E-value: 1.00e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  11 LIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLA 90
Cdd:MTH00195    5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  91 LTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYTL 170
Cdd:MTH00195   85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 171 TALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLLF 250
Cdd:MTH00195  165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160251 251 LNPSALnpplelfpPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAG 321
Cdd:MTH00195  245 LGGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
15-306 2.23e-110

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 322.89  E-value: 2.23e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  15 LAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLALTIW 94
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  95 AP--LPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYTLTA 172
Cdd:pfam00146  83 AVipFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 173 LIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLLFLn 252
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002160251 253 pSALNPPLELFPPV-LATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 242 -GGWLGPFPLPGLLwFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 11-317 3.17e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 322.49  E-value: 3.17e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  11 LIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLA 90
Cdd:MTH00193    5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  91 LTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYTL 170
Cdd:MTH00193   85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 171 TALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLLF 250
Cdd:MTH00193  165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002160251 251 LNPSALNPPLELfppvlatKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPI 317
Cdd:MTH00193  245 LGGDLLSLLFYL-------KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 8-308 1.49e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 321.05  E-value: 1.49e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   8 LTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLAL 87
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  88 LLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGS 167
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 168 YTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTG 247
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160251 248 LLFLnpSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00143  241 VLFF--GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 10-325 4.03e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 305.11  E-value: 4.03e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  10 YLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLL 89
Cdd:MTH00054    4 IIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  90 ALTIWAPLPLPLPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGS 167
Cdd:MTH00054   84 AFIAWGVIPYGEGVVlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 168 YTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTG 247
Cdd:MTH00054  164 LNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 248 LLFL----NPSALNPPLELFpPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLP 323
Cdd:MTH00054  244 ILFLggwlVISGPTSYFSNF-VWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                  ..
gi 1002160251 324 PY 325
Cdd:MTH00054  323 PF 324
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-314 1.78e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 303.11  E-value: 1.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   6 TSLTYLIMtlayMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPML 85
Cdd:MTH00225    3 FLLKFLIM----LICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPIL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  86 ALLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLS 165
Cdd:MTH00225   79 SLILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 166 GSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00225  159 LTYNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSML 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002160251 246 TGLLFLNPSALnppleLFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTS 314
Cdd:MTH00225  239 TSILFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 4.59e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 302.82  E-value: 4.59e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   1 MTWPNTS-LTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLF 79
Cdd:COG1005     1 MSLLLAPlLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  80 LTTPMLALLLALTIWAP--LPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAII 157
Cdd:COG1005    81 LLAPILAFIPALLAFAVipFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 158 LLSVVMLSGSYTLTALIITQE-PLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEY 236
Cdd:COG1005   161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002160251 237 ANIMLMNTLTGLLFL---NPSALNPPLELFPPVL--ATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   241 ANMFLVSALATTLFLggwLGPFPILPLGGLPGILwfLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-324 9.28e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 299.34  E-value: 9.28e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   6 TSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPML 85
Cdd:MTH00216    4 FIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  86 ALLLALTIWAPLPLPLPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVM 163
Cdd:MTH00216   84 SFTLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 164 LSGSYTLTALIITQEP-LYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLM 242
Cdd:MTH00216  164 CVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 243 NTLTGLLFLNpSALNPPLELF--PPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYA 320
Cdd:MTH00216  244 SCLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFN 322


                  ....
gi 1002160251 321 GLPP 324
Cdd:MTH00216  323 GPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-306 2.09e-96

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 287.86  E-value: 2.09e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   1 MTWPNTSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFL 80
Cdd:PRK06076    3 LFGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  81 TTPMLALLLALTIWAP--LPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIIL 158
Cdd:PRK06076   83 LAPVIAFIPAFLAWAVipFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 159 LSVVMLSGSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYAN 238
Cdd:PRK06076  163 LAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYIN 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160251 239 IMLMNTLTGLLFLNP-SALNPPLELFPPVLAT--KVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:PRK06076  243 MILVSALITTLFLGGwLPPFPLGGGIPGAIWFvlKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-308 1.28e-84

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 257.79  E-value: 1.28e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   7 SLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLA 86
Cdd:MTH00010    2 NISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  87 LLLALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSG 166
Cdd:MTH00010   82 LILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 167 SYTLTALIITQEPLYLVFSSwPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLT 246
Cdd:MTH00010  162 TFSFSKIIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002160251 247 GLLFLNPSalnPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00010  241 SVFFTSFI---PSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTS 299
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 5-324 2.94e-84

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 258.02  E-value: 2.94e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   5 NTSLTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPM 84
Cdd:MTH00029    4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  85 LALLLALTIWAPLPL--PLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVV 162
Cdd:MTH00029   84 ISFTLAILAWAIVTMdqGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 163 MLSGSYTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLM 242
Cdd:MTH00029  164 LCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 243 NTLTGLLFLNP--SALNPPLELFPPVLATKVLLLSSS--------------FLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00029  244 SCMMTIFFLGGwlSPLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323

                         330
                  ....*....|....*...
gi 1002160251 307 SLHLWHTSMPISYAGLPP 324
Cdd:MTH00029  324 GLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 13-306 9.08e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 195.50  E-value: 9.08e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  13 MTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLALT 92
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  93 IWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYTLTA 172
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 173 liitqeplYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLLFLN 252
Cdd:MTH00090  161 --------SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1002160251 253 PSALNpplelfppvlatkVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00090  233 FSFLM-------------LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 10-306 2.15e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 158.55  E-value: 2.15e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  10 YLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLL 89
Cdd:MTH00058    3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  90 ALTIWAPLPLPLPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSYT 169
Cdd:MTH00058   83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 170 LtaLIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTGLL 249
Cdd:MTH00058  163 L--VDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1002160251 250 FLNPSalnpplelFPPVLATKVLLLsssFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00058  241 FFGGG--------FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 11-306 7.35e-44

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 153.95  E-value: 7.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  11 LIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPAADGVKLFIKEPVRPSTSSPLLFLTTPMLALLLA 90
Cdd:CHL00032   30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  91 LTIWAPLPLPLPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVVMLSGSY 168
Cdd:CHL00032  110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 169 TlTALIITQEPLYlVFSSWPL------AMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLM 242
Cdd:CHL00032  190 S-TVDIVEAQSKY-GFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 243 NTLTGLLFLNPSALNPPLELFPPVLATK--------------VLLLSSSFLWI----RASYPRFRYDQLMHLLWKNFLPL 304
Cdd:CHL00032  268 SLFVTVLYLGGWNLSIPYIFIPELFEINktggvfgttigifiTLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPI 347


                  ..
gi 1002160251 305 TL 306
Cdd:CHL00032  348 SL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
8-308 3.83e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.14  E-value: 3.83e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251   8 LTYLIMTLAYMIPVLIAVAFLTLVERKILSYMQSRKGPnivgpfGLLQPAADGVKLFIKEPVRPSTSSPLLFLT-----T 82
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAApyvalA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251  83 PMLALLLALTIWAPLPLPLPLVDLNLGLlfllAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSVV 162
Cdd:COG0650    75 AMLLAALLVPVLTTGPPLSFSGDLIVLV----YLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160251 163 MLSGS---YTLTALIITQEPLYLVFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANI 239
Cdd:COG0650   151 LLAGStslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002160251 240 MLMNTLTGLLFLnPSALNPPLELFPPVLATKVLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:COG0650   231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLAL 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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