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Conserved domains on  [gi|1002004997|gb|AMM63578|]
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ORF1 [Tomato marchitez virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MreC super family cl46468
rod shape-determining protein MreC; MreC (murein formation C) is involved in the rod shape ...
 135-171 7.12e-04

rod shape-determining protein MreC; MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.


The actual alignment was detected with superfamily member COG1792:

Pssm-ID: 480808  Cd Length: 282  Bit Score: 39.09  E-value: 7.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002004997 135 TREDLLKENKALREELERTRKELL---EQKSENQKLRLQL 171
Cdd:COG1792    69 SLFNLREENERLKEENAELRAELQrleELEAENARLRELL 108
 
Name Accession Description Interval E-value
MreC COG1792
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ...
 135-171 7.12e-04

Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 441397  Cd Length: 282  Bit Score: 39.09  E-value: 7.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002004997 135 TREDLLKENKALREELERTRKELL---EQKSENQKLRLQL 171
Cdd:COG1792    69 SLFNLREENERLKEENAELRAELQrleELEAENARLRELL 108
PRK13922 PRK13922
rod shape-determining protein MreC; Provisional
 135-181 5.70e-03

rod shape-determining protein MreC; Provisional


Pssm-ID: 237560  Cd Length: 276  Bit Score: 36.49  E-value: 5.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002004997 135 TREDLLKENKALREELERTRKELLEQ---KSENQKLRLQLSNQVSNNDIF 181
Cdd:PRK13922   70 SLFDLREENEELKKELLELESRLQELeqlEAENARLRELLNLKESLDYQF 119
 
Name Accession Description Interval E-value
MreC COG1792
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ...
 135-171 7.12e-04

Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 441397  Cd Length: 282  Bit Score: 39.09  E-value: 7.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002004997 135 TREDLLKENKALREELERTRKELL---EQKSENQKLRLQL 171
Cdd:COG1792    69 SLFNLREENERLKEENAELRAELQrleELEAENARLRELL 108
PRK13922 PRK13922
rod shape-determining protein MreC; Provisional
 135-181 5.70e-03

rod shape-determining protein MreC; Provisional


Pssm-ID: 237560  Cd Length: 276  Bit Score: 36.49  E-value: 5.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1002004997 135 TREDLLKENKALREELERTRKELLEQ---KSENQKLRLQLSNQVSNNDIF 181
Cdd:PRK13922   70 SLFDLREENEELKKELLELESRLQELeqlEAENARLRELLNLKESLDYQF 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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