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Conserved domains on  [gi|1000908000|gb|AML61065|]
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TrAP [Tomato leaf curl Sudan virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_AL2 super family cl03213
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-129 1.64e-32

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


The actual alignment was detected with superfamily member pfam01440:

Pssm-ID: 279747  Cd Length: 126  Bit Score: 111.23  E-value: 1.64e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000908000   1 MQPSSPStshcSQVPIKVQHKLAKKKIIRRRRVDLDCGCSYYLHINCsNHGFTHRGTHHCSSSREWRIYLGDKQSPLFQD 80
Cdd:pfam01440   1 MKPLSPG----HQPSIKSKVRSLITKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1000908000  81 HQPRREAIQQEpryhfNTNPI----QSQHKEGTGDSQMFSQLPNLDNLTASDW 129
Cdd:pfam01440  76 PMVRRANLSTE-----DTNPItnqsQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Name Accession Description Interval E-value
Gemini_AL2 pfam01440
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-129 1.64e-32

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


Pssm-ID: 279747  Cd Length: 126  Bit Score: 111.23  E-value: 1.64e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000908000   1 MQPSSPStshcSQVPIKVQHKLAKKKIIRRRRVDLDCGCSYYLHINCsNHGFTHRGTHHCSSSREWRIYLGDKQSPLFQD 80
Cdd:pfam01440   1 MKPLSPG----HQPSIKSKVRSLITKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1000908000  81 HQPRREAIQQEpryhfNTNPI----QSQHKEGTGDSQMFSQLPNLDNLTASDW 129
Cdd:pfam01440  76 PMVRRANLSTE-----DTNPItnqsQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Name Accession Description Interval E-value
Gemini_AL2 pfam01440
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-129 1.64e-32

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


Pssm-ID: 279747  Cd Length: 126  Bit Score: 111.23  E-value: 1.64e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000908000   1 MQPSSPStshcSQVPIKVQHKLAKKKIIRRRRVDLDCGCSYYLHINCsNHGFTHRGTHHCSSSREWRIYLGDKQSPLFQD 80
Cdd:pfam01440   1 MKPLSPG----HQPSIKSKVRSLITKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1000908000  81 HQPRREAIQQEpryhfNTNPI----QSQHKEGTGDSQMFSQLPNLDNLTASDW 129
Cdd:pfam01440  76 PMVRRANLSTE-----DTNPItnqsQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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