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Conserved domains on  [gi|1000356223|gb|AML28792|]
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photosystem I P700 chlorophyll A apoprotein A1, partial (plastid) [Gelidiella ligulata]

Protein Classification

photosystem I psaA/psaB family protein( domain architecture ID 954)

photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX

EC:  1.97.1.12
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
psaB super family cl08224
photosystem I P700 chlorophyll a apoprotein A2
1-433 0e+00

photosystem I P700 chlorophyll a apoprotein A2


The actual alignment was detected with superfamily member CHL00056:

Pssm-ID: 471792  Cd Length: 750  Bit Score: 907.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:CHL00056  109 KPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWF 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLVNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:CHL00056  189 QDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSE 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGIYEILTSSWHA 240
Cdd:CHL00056  269 YSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHA 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 241 QLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVLDRVI 320
Cdd:CHL00056  349 QLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVL 428
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 321 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTSPNSLATASYAFG 400
Cdd:CHL00056  429 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWG 508
                         410       420       430
                  ....*....|....*....|....*....|....
gi 1000356223 401 G-ETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:CHL00056  509 GgDLVAVGGKVALLPIPLGTADFLVHHIHAFTIH 542
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-433 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 907.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:CHL00056  109 KPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWF 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLVNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:CHL00056  189 QDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSE 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGIYEILTSSWHA 240
Cdd:CHL00056  269 YSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHA 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 241 QLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVLDRVI 320
Cdd:CHL00056  349 QLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVL 428
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 321 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTSPNSLATASYAFG 400
Cdd:CHL00056  429 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWG 508
                         410       420       430
                  ....*....|....*....|....*....|....
gi 1000356223 401 G-ETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:CHL00056  509 GgDLVAVGGKVALLPIPLGTADFLVHHIHAFTIH 542
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-433 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 818.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:TIGR01335 112 KPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLVNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:TIGR01335 192 QNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGA 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGIYEILTSSWHA 240
Cdd:TIGR01335 272 YSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHA 351
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 241 QLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVLDRVI 320
Cdd:TIGR01335 352 QLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVI 431
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 321 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTSPNSLATASYAFG 400
Cdd:TIGR01335 432 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFG 511
                         410       420       430
                  ....*....|....*....|....*....|...
gi 1000356223 401 GETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:TIGR01335 512 GEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIH 544
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-433 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 772.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:COG5701   111 KPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWF 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLvNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:COG5701   191 QNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGA 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGP---FTG-EGHKGIYEILTS 236
Cdd:COG5701   270 FSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTT 349
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 237 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVL 316
Cdd:COG5701   350 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVL 429
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 317 DRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGN-TSPNSLATA 395
Cdd:COG5701   430 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTV 509
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1000356223 396 SYAFGGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:COG5701   510 SEAFGGDVVAVGGKVAMMPIPLGTADFMIHHIHAFTIH 547
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-433 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 713.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNG--DVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLE 78
Cdd:pfam00223  78 KPIAHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLE 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  79 WFQNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLvNRELICQLYPSFNKGILPFFTLNW 158
Cdd:pfam00223 158 WFKNAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNW 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 159 SEYSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGP--FTGEGHKGIYEILTS 236
Cdd:pfam00223 237 GAYADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNN 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 237 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVL 316
Cdd:pfam00223 317 SWHAQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVL 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 317 DRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQ----------NIHTLAPGN 386
Cdd:pfam00223 397 DRVLEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGS 476
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1000356223 387 TSPNSLATASYAF-GGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:pfam00223 477 TAPNAGAGVSDVWlPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIH 524
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-433 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 907.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:CHL00056  109 KPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWF 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLVNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:CHL00056  189 QDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSE 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGIYEILTSSWHA 240
Cdd:CHL00056  269 YSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHA 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 241 QLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVLDRVI 320
Cdd:CHL00056  349 QLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVL 428
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 321 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTSPNSLATASYAFG 400
Cdd:CHL00056  429 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWG 508
                         410       420       430
                  ....*....|....*....|....*....|....
gi 1000356223 401 G-ETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:CHL00056  509 GgDLVAVGGKVALLPIPLGTADFLVHHIHAFTIH 542
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-433 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 818.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:TIGR01335 112 KPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLVNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:TIGR01335 192 QNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGA 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGIYEILTSSWHA 240
Cdd:TIGR01335 272 YSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHA 351
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 241 QLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVLDRVI 320
Cdd:TIGR01335 352 QLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVI 431
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 321 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTSPNSLATASYAFG 400
Cdd:TIGR01335 432 RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFG 511
                         410       420       430
                  ....*....|....*....|....*....|...
gi 1000356223 401 GETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:TIGR01335 512 GEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIH 544
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-433 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 772.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLEWF 80
Cdd:COG5701   111 KPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWF 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  81 QNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLvNRELICQLYPSFNKGILPFFTLNWSE 160
Cdd:COG5701   191 QNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGA 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 161 YSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGP---FTG-EGHKGIYEILTS 236
Cdd:COG5701   270 FSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTT 349
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 237 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVL 316
Cdd:COG5701   350 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVL 429
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 317 DRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGN-TSPNSLATA 395
Cdd:COG5701   430 DRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTV 509
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1000356223 396 SYAFGGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:COG5701   510 SEAFGGDVVAVGGKVAMMPIPLGTADFMIHHIHAFTIH 547
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-433 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 713.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVWPIVGQEILNG--DVGGGFQGVQITSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYHKAAPKLE 78
Cdd:pfam00223  78 KPIAHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLE 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  79 WFQNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEFLvNRELICQLYPSFNKGILPFFTLNW 158
Cdd:pfam00223 158 WFKNAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNW 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 159 SEYSDFLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAHKGP--FTGEGHKGIYEILTS 236
Cdd:pfam00223 237 GAYADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNN 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 237 SWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAKNYNNVL 316
Cdd:pfam00223 317 SWHAQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVL 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 317 DRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQ----------NIHTLAPGN 386
Cdd:pfam00223 397 DRVLEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGS 476
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1000356223 387 TSPNSLATASYAF-GGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:pfam00223 477 TAPNAGAGVSDVWlPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIH 524
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
1-433 2.71e-123

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 374.44  E-value: 2.71e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVW-PIVGQEILNGDVGGGFQG-VQI-TSGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYH-KAAPK 76
Cdd:CHL00054   85 RPIAHAIWdPHFGQPAVEAFTRGGALGpVNIaYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPS 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  77 LEWFQNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEflvnrelicqlypsfnKGILPFFTL 156
Cdd:CHL00054  165 VSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPHP----------------QGLGPLFTG 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 157 NWSEYSD------------------FLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAH 218
Cdd:CHL00054  229 QWNLYAQnpdssshlfgtsqgagtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAH 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 219 KGP--FTGEGHKGIYEILTSSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIVGAGA 296
Cdd:CHL00054  309 IPPggRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFA 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 297 HASIFMVRDYNPAKNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMfsdtaIQLQPIFAQWI 376
Cdd:CHL00054  389 HGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWI 463
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1000356223 377 QNIH--------TLAPGNTSPNSLATASYAFGGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:CHL00054  464 QSAHgktsygfdVLLSSTNSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLH 528
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-433 1.86e-115

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 354.57  E-value: 1.86e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223   1 KPSAQVVW-PIVGQEILNGDVGGGFQG-VQIT-SGFFQLWRASGITTELELYATAIGGLFMAALMVFAGWFHYH-KAAPK 76
Cdd:COG5702    85 RPIAHAIWdPHFGKPAIEAFTQAGASNpVNICySGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPS 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223  77 LEWFQNVESMMNHHLAGLLGLGCLGWAGHQIHISLPINKLLDAGVSPNEIPLPHEflvnrelicqlypsfnKGILPFFTL 156
Cdd:COG5702   165 LAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPHP----------------AGLAPFFTG 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 157 NWSEYSD------------------FLTFKGGLNPVTGGLWLTDTAHHHLALAVLFIVAGHMYRTNWGIGHSMKEILEAH 218
Cdd:COG5702   229 NWGVYAQnpdtaghafgtsqgagtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAH 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 219 KGP------FTGEGHKGIYEILTSSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCIV 292
Cdd:COG5702   309 QGPgrsgffKTGLGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMI 388
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1000356223 293 GAGAHASIFMVRDYNPAKNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMfsdtaIQLQPIF 372
Cdd:COG5702   389 GAFAHGAIFFVRDYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQ-----ILIEPVF 463
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1000356223 373 AQWIQNIHTLA----------PGNTSPNSLATASYAF-GGETIAIGNKVAMMPISLGTADFMVHHIHAFTIH 433
Cdd:COG5702   464 AQFIQAAHGKVlygidtllsnPDSVASTAWPNYGNVWlPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLH 535
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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