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Conserved domains on  [gi|108793316|ref|YP_637017|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Phascolarctos cinereus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-116 4.75e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.75e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   2 INLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQ 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  82 LPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-116 4.75e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.75e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   2 INLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQ 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  82 LPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 9.17e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 9.17e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   19 ILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLPH-PNMTLVLSYCLIV 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 108793316   98 LLTAGLAYEWSQKGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 5.30e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.25  E-value: 5.30e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   4 LLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLP 83
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 108793316  84 HPNMTLVLSYCL-IVLLTAGLAYEWSQKGLEW 114
Cdd:COG0838   86 ELGWFGLIEMLVfIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-116 4.75e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.75e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   2 INLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQ 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  82 LPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 2-116 3.14e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 147.37  E-value: 3.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   2 INLLIT-LIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWAL 80
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 108793316  81 QLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-116 7.66e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 143.60  E-value: 7.66e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   4 LLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQLP 83
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 108793316  84 HPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-115 1.40e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 140.40  E-value: 1.40e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   3 NLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQL 82
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 108793316  83 PHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWT 115
Cdd:MTH00113  82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 6.49e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 123.94  E-value: 6.49e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWAL 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 108793316  81 QLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 7.99e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 108.06  E-value: 7.99e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWAL 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 108793316  81 QLPHPNMTLVLSycLIVLLTAGLAYEWSQKGLEW 114
Cdd:MTH00203  81 QLSSLSLLLAFL--FLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 9.17e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 9.17e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   19 ILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLPH-PNMTLVLSYCLIV 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 108793316   98 LLTAGLAYEWSQKGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 7.96e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 93.00  E-value: 7.96e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLY-LEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWA 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 108793316  80 LQLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWTE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 1.25e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 89.84  E-value: 1.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   3 NLLITLIVNFMLSTIIILIAFWL-PQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWALQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 108793316  82 LPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 5.30e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.25  E-value: 5.30e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   4 LLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLP 83
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 108793316  84 HPNMTLVLSYCL-IVLLTAGLAYEWSQKGLEW 114
Cdd:COG0838   86 ELGWFGLIEMLVfIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-114 5.34e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.50  E-value: 5.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLP-QLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWA 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSfRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  80 LQLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEW 114
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-114 1.84e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 79.37  E-value: 1.84e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWAL 80
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCV 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  81 QLPHPNMTLV-LSYCLIVLLTAGLAYEWSQKGLEW 114
Cdd:MTH00055  83 VYNQIGLFGFwVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 9.70e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.59  E-value: 9.70e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLY-LEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLPWA 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTAdREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 108793316  80 LQLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWT 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-115 2.57e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 76.44  E-value: 2.57e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   4 LLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLP 83
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFR 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 108793316  84 HPNMT-LVLSYCLIVLLTAGLAYEWSQKGLEWT 115
Cdd:PRK06602  89 EIGWLgFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-114 7.47e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 75.10  E-value: 7.47e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   2 INLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQ 81
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 108793316  82 LphpNMTLVLSYCLIVL----LTAGLAYEWSQKGLEW 114
Cdd:MTH00018  79 Y---NQIAPFGFWTMVGflfiLTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 33-114 3.19e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 71.50  E-value: 3.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316  33 EKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLPHPNM-TLVLSYCLIVLLTAGLAYEWSQKG 111
Cdd:MTH00030  42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLfSFWIVYTFLIVLAIGLAYEWIKGG 119


                 ...
gi 108793316 112 LEW 114
Cdd:MTH00030 120 LEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 34-115 9.29e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.98  E-value: 9.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316  34 KSSPYECGFDPLGSARLP--FSLKFFLVAITFLLFDLEIALLLslPWALQLPH-PNMTLVLSYCLIVLLTAGLAYEWSQK 110
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLY--PWAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....*
gi 108793316 111 GLEWT 115
Cdd:PRK07928 115 GLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
33-114 2.52e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.20  E-value: 2.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316  33 EKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLslPWALQLPHPNM-TLVLSYCLIVLLTAGLAYEWSQKG 111
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLY--PWAVAYDKLGLfALIEMLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 108793316 112 LEW 114
Cdd:PRK07756 119 LQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-115 4.59e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 47.67  E-value: 4.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316  12 FMLSTIIILIAFWLPQLYLYL----EKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLlsLPWALQLPHPNM 87
Cdd:CHL00022  14 LIISSLIPILAFLISGLLAPIskgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGV 91

                         90       100
                 ....*....|....*....|....*....
gi 108793316  88 TLVLSYCLIVL-LTAGLAYEWSQKGLEWT 115
Cdd:CHL00022  92 SAFIEALIFVLiLIVGLVYAWRKGALEWS 120
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 5.83e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.50  E-value: 5.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316   1 MINLLITLIVNFMLSTIIILIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLpwal 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 108793316  81 qLPHPNMTLVLSYCLIVLLTAGLAYEWSQKGLEWT 115
Cdd:MTH00092  77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
34-114 1.02e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 1.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108793316  34 KSSPYECGFDPLGSARlPFSLKFFLVAITFLLFDLEIALLlsLPWALQLPHPNMTLVLSYCL-IVLLTAGLAYEWSQKGL 112
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFGLIEMLLfIVLLTIGFIYAWKKGAL 123


                 ..
gi 108793316 113 EW 114
Cdd:PRK08489 124 EW 125
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-77 9.10e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.03  E-value: 9.10e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 108793316  36 SPYECGFDPLGSARLPFSLKFFLVAITFLLFDLEIALLLSLP 77
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 24-60 5.64e-03

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 34.89  E-value: 5.64e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 108793316  24 WLPQLY--LYLEKSSPYECGFDPLGSARLPFSLKFFLVA 60
Cdd:PLN00101  56 WLPGLAspGYLNGSLPGDNGFDPLGLAEDPENLKWFVQA 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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