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Conserved domains on  [gi|90994438|ref|YP_536928|]
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ATP synthase CF0 A subunit (chloroplast) [Neopyropia yezoensis]

Protein Classification

ATP synthase subunit a( domain architecture ID 10000050)

ATP synthase subunit a is a component of the Fo complex of FoF1-ATP synthase found in chloroplasts, and which plays a direct role in the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpI CHL00046
ATP synthase CF0 A subunit
 15-240 4.04e-151

ATP synthase CF0 A subunit


:

Pssm-ID: 176987  Cd Length: 228  Bit Score: 420.11  E-value: 4.04e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   15 LSAVEVGKHLYWKIGSLQLHGQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWV 94
Cdd:CHL00046   3 ISGVEVGQHFYWQIGGFQVHGQVLITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   95 PYIATLFLFILGCNWAGALIPWKLIHLPEGELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFARYIQPTPVLLPIN 174
Cdd:CHL00046  83 PFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90994438  175 ILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGE 240
Cdd:CHL00046 163 ILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGE 228
 
Name Accession Description Interval E-value
atpI CHL00046
ATP synthase CF0 A subunit
 15-240 4.04e-151

ATP synthase CF0 A subunit


Pssm-ID: 176987  Cd Length: 228  Bit Score: 420.11  E-value: 4.04e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   15 LSAVEVGKHLYWKIGSLQLHGQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWV 94
Cdd:CHL00046   3 ISGVEVGQHFYWQIGGFQVHGQVLITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   95 PYIATLFLFILGCNWAGALIPWKLIHLPEGELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFARYIQPTPVLLPIN 174
Cdd:CHL00046  83 PFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90994438  175 ILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGE 240
Cdd:CHL00046 163 ILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGE 228
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 36-243 1.18e-57

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 182.20  E-value: 1.18e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  36 QVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:COG0356   1 DTVLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIG-KKGRKFAPLLLTLFLFILVSNLLG-LIP 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 116 WklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPT----PVLLPINILEDFTKPLSLSFRL 189
Cdd:COG0356  79 G---------LFPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKhlFFPPFpwlaPLMLPIEIISELARPLSLSLRL 149

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 190 FGNVLADELVVSVFTLLIPILIPLPV--------MILGLFASSIQALIFSTLSAAYIGEAME 243
Cdd:COG0356 150 FGNMFAGHIILLLLAGLAPFLLLGVLslllpvawTAFELLVGFLQAYIFTMLTAVYISLAVE 211
ATP-synt_A pfam00119
ATP synthase A chain;
39-239 4.60e-49

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 160.35  E-value: 4.60e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438    39 IVSWLVIATLLTLSFLGTRNLQR-IPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWVPYIATLFLFILGCNWAGaLIPwk 117
Cdd:pfam00119   2 LMSLIVALILLLFLLLATRKTKKlVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLG-LIP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   118 liHLPEGelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQP------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:pfam00119  79 --KSPGG--FTVTADINVTLALALIVFLLVHYYGIKKHGLgGYFKKLFVPpvplplVPLLLPIEIISEFARPVSLSLRLF 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438   191 GNVLADELVVSVFTLLIPILIPLPV-------------MILGLFASSIQALIFSTLSAAYIG 239
Cdd:pfam00119 155 GNMLAGHLLLLLLAGLIFALLSAGFllgvippllgvawTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 90-239 4.04e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 120.20  E-value: 4.04e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  90 YRPWVPYIATLFLFILGCNWAGaLIPWklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR------Y 163
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLG-LIPY---------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHflppgtP 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 164 IQPTPVLLPINILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLP----------VMILGLFASSIQALIFSTL 233
Cdd:cd00310  71 LPLAPLMVPIELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVgllplllpvaLTLLELFVAFIQAYVFTLL 150


                ....*.
gi 90994438 234 SAAYIG 239
Cdd:cd00310 151 TAVYIS 156
altF1_A TIGR03306
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ...
 24-241 7.12e-29

alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.


Pssm-ID: 132349  Cd Length: 217  Bit Score: 108.29  E-value: 7.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438    24 LYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPE--KFQNFMEFILEFLQDiAKNQIGEHEYRPWVPYIATLF 101
Cdd:TIGR03306   7 IYWQYGFVKINATI-AFTWLLMLLLVIGSWLITRRLSTGLErsRWQNLLEVLVTGIQE-QISDVGLAKPRKYLPFLGTLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   102 LFILGCNWagalipwkLIHLPEGElaAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFT 180
Cdd:TIGR03306  85 LFIAVANL--------LSVIPGYE--PPTGSLSTTAALALCVFVAVPLFGIAERGLsGYLKSYLKPTPFMLPFNIIGELS 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438   181 KPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR03306 155 RTLALAVRLFGNMMSGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
 
Name Accession Description Interval E-value
atpI CHL00046
ATP synthase CF0 A subunit
 15-240 4.04e-151

ATP synthase CF0 A subunit


Pssm-ID: 176987  Cd Length: 228  Bit Score: 420.11  E-value: 4.04e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   15 LSAVEVGKHLYWKIGSLQLHGQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWV 94
Cdd:CHL00046   3 ISGVEVGQHFYWQIGGFQVHGQVLITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   95 PYIATLFLFILGCNWAGALIPWKLIHLPEGELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFARYIQPTPVLLPIN 174
Cdd:CHL00046  83 PFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90994438  175 ILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGE 240
Cdd:CHL00046 163 ILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGE 228
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 20-245 4.77e-61

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 191.55  E-value: 4.77e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   20 VGKHLYWKIGSLQLHgQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEhEYRPWVPYIAT 99
Cdd:PRK05815   1 IEHHLIIGFGGFNFD-SLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGG-KGKKFAPLAFT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  100 LFLFILGCNWAGaLIPWklihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPTPVLLPINILE 177
Cdd:PRK05815  79 LFLFILLMNLLG-LIPY--------LLFPPTADINVTLALALIVFVLVIYYGIKKKGLGGYLKefYLQPHPLLLPIEIIS 149

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 90994438  178 DFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPV---------MILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK05815 150 EFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALaplilpvawTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 36-243 1.18e-57

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 182.20  E-value: 1.18e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  36 QVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:COG0356   1 DTVLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIG-KKGRKFAPLLLTLFLFILVSNLLG-LIP 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 116 WklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPT----PVLLPINILEDFTKPLSLSFRL 189
Cdd:COG0356  79 G---------LFPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKhlFFPPFpwlaPLMLPIEIISELARPLSLSLRL 149

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 190 FGNVLADELVVSVFTLLIPILIPLPV--------MILGLFASSIQALIFSTLSAAYIGEAME 243
Cdd:COG0356 150 FGNMFAGHIILLLLAGLAPFLLLGVLslllpvawTAFELLVGFLQAYIFTMLTAVYISLAVE 211
ATP-synt_A pfam00119
ATP synthase A chain;
39-239 4.60e-49

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 160.35  E-value: 4.60e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438    39 IVSWLVIATLLTLSFLGTRNLQR-IPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWVPYIATLFLFILGCNWAGaLIPwk 117
Cdd:pfam00119   2 LMSLIVALILLLFLLLATRKTKKlVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLG-LIP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   118 liHLPEGelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQP------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:pfam00119  79 --KSPGG--FTVTADINVTLALALIVFLLVHYYGIKKHGLgGYFKKLFVPpvplplVPLLLPIEIISEFARPVSLSLRLF 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438   191 GNVLADELVVSVFTLLIPILIPLPV-------------MILGLFASSIQALIFSTLSAAYIG 239
Cdd:pfam00119 155 GNMLAGHLLLLLLAGLIFALLSAGFllgvippllgvawTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 90-239 4.04e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 120.20  E-value: 4.04e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  90 YRPWVPYIATLFLFILGCNWAGaLIPWklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR------Y 163
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLG-LIPY---------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHflppgtP 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 164 IQPTPVLLPINILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLP----------VMILGLFASSIQALIFSTL 233
Cdd:cd00310  71 LPLAPLMVPIELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVgllplllpvaLTLLELFVAFIQAYVFTLL 150


                ....*.
gi 90994438 234 SAAYIG 239
Cdd:cd00310 151 TAVYIS 156
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 39-244 3.89e-32

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 117.10  E-value: 3.89e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   39 IVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFL-QDIAKN-QIGEHEYRPwvpYIATLFLFILGCNWAGaLIPw 116
Cdd:PRK13421  24 VVTWAIMAVLAAGSALATRRLSLAPGRLQSVLELVVTTIdAQIRDTmQTDPAPYRA---LIGTLFLFVLVANWSS-LVP- 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  117 klihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFTKPLSLSFRLFGNVLA 195
Cdd:PRK13421  99 --------GVEPPTAHLETDAALALIVFLATIYYGVRARGVrGYLATFAEPTWVMIPLNLVEQLTRTFSLIVRLFGNVMS 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 90994438  196 DELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEG 244
Cdd:PRK13421 171 GVFVIGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMVFIGAAVSD 219
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 23-245 2.05e-30

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 112.91  E-value: 2.05e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   23 HLYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHeYRPWVPYIATLFL 102
Cdd:PRK13420   6 HVLFHIGPLPITESV-LTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRH-ARLVLPFVGTLWI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  103 FILGCNWAGaLIPwklihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFTK 181
Cdd:PRK13420  84 FILVANLIG-LIP---------GFHSPTADLSVTAALALLVFFSVHWFGIRAEGLrEYLKHYLSPSPFLLPFHLISEITR 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90994438  182 PLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK13420 154 TLALAVRLFGNIMSLELAALLVLLVAGFLVPVPILMLHIIEALVQAYIFGMLALIYIAGGIQAH 217
altF1_A TIGR03306
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ...
 24-241 7.12e-29

alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.


Pssm-ID: 132349  Cd Length: 217  Bit Score: 108.29  E-value: 7.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438    24 LYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPE--KFQNFMEFILEFLQDiAKNQIGEHEYRPWVPYIATLF 101
Cdd:TIGR03306   7 IYWQYGFVKINATI-AFTWLLMLLLVIGSWLITRRLSTGLErsRWQNLLEVLVTGIQE-QISDVGLAKPRKYLPFLGTLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   102 LFILGCNWagalipwkLIHLPEGElaAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFT 180
Cdd:TIGR03306  85 LFIAVANL--------LSVIPGYE--PPTGSLSTTAALALCVFVAVPLFGIAERGLsGYLKSYLKPTPFMLPFNIIGELS 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438   181 KPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR03306 155 RTLALAVRLFGNMMSGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 41-241 1.77e-28

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 107.68  E-value: 1.77e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438    41 SWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYrPWVPYIATLFLFILGCNWAGaLIPWklih 120
Cdd:TIGR01131  19 SLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKG-KFFPLIFTLFLFILISNLLG-LIPY---- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   121 lpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLG---YFARYIQPT---PVLLPINILEDFTKPLSLSFRLFGNVL 194
Cdd:TIGR01131  93 -----SFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGflaHLVPSGTPLpliPFLVIIETISYLARPISLSVRLFANIS 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 90994438   195 ADELVVSVFTLLIPILIPLPVM-----------ILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR01131 168 AGHLLLTLLSGLLFSLMSSAIFallllilvaliILEIFVAFIQAYVFTLLTCLYLNDA 225
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 42-248 1.49e-25

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 102.51  E-value: 1.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   42 WLVIATLLTLSFLGTRNLQRI-----PEKFQNFMEFILEFLQ-DIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:PRK13419 114 WIASAILLVVFLAAGRKYKKMtksqaPKGLANAMEALVEFIRlDVAKSNIG-HGYEKFLPYLLTVFFFILVCNLLG-LVP 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  116 WKlihlpegelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTP-----VLLPINILEDFTKPLSLSFRL 189
Cdd:PRK13419 192 YG---------ATATGNINVTLTLAVFTFFITQYAAIKAHGIkGYLAHLTGGTHwslwiIMIPIEFIGLFTKPFALTVRL 262

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438  190 FGNVLADELVV------------SVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGHGEE 248
Cdd:PRK13419 263 FANMTAGHIVIlslifisfilksYIVAVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFIGLATAHEGHD 333
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 19-245 1.58e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 54.13  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   19 EVGKHLYWkIGSLQLH-----GQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPW 93
Cdd:PRK13417  79 ETGKRFHY-VGGFDMHitkrvTMMWIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIVDESMHGHGHSY 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   94 VPYIATLFLFILGCNWAGaLIP------------WKLIHLPEGELA--------------APTNDINTTVALSLLTSLAY 147
Cdd:PRK13417 158 YHYIFTLFFFILFCNLMG-LVPsvgeltvvasdyGGLVALGVMDHTphalptfakvwsgiTVTGDISVTMTLALLTMFLI 236

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  148 FYAGLSKKGLGYFARYIqPTPVLLPIN--------ILEDFTKPLSLSFRLFGNVLADELVV-----------SVFTLLIP 208
Cdd:PRK13417 237 YGAGFSYQGPKFIWHSV-PNGVPLLLYpimwplefIVSPMAKTFALTVRLLANMTAGHVIIlalmgfifqfqSWGIVPVS 315

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 90994438  209 ILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK13417 316 VIGSGLIYVLEIFVAFLQAYIFVLLTSLFVGLSMHRH 352
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 38-245 1.32e-04

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 41.92  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   38 FIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEhEYRPWVPYIATLFLFILGCNWAGaLIPWK 117
Cdd:MTH00175  28 FTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGK-SGQKYFPFILSLFLFIAILNILG-LFPYV 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  118 LihlpegelaAPTNDINTTVALSLLTSLAYFYAGLSKKGLGyFARYIQP-------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:MTH00175 106 F---------TPTAHIIITFGLSLSIIIAVTLLGFLTFKWN-FLSILMPggaplvlAPFLVLIETLSYLIRAISLGVRLA 175

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90994438  191 GNVLADELVVSVFTLLIPILIPLPVMILGLFASS--------------IQALIFSTLSAAYIGEAMEGH 245
Cdd:MTH00175 176 ANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLimifitllemavavIQAYVFCLLTTIYLGDTIALH 244
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 53-245 7.78e-04

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 39.64  E-value: 7.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438   53 FLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRpWVPYIATLFLFILGCNWAGaLIPWKLihlpegelaAPTND 132
Cdd:MTH00172  32 LLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLK-YFPFIISLFFFIVFLNLLG-LFPYVF---------TPTTH 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438  133 INTTVALSLLTSLAYFYAGLSKKGLGYFARYIqPT-------PVLLPINILEDFTKPLSLSFRLFGNVLADEL------- 198
Cdd:MTH00172 101 IVVTLGLSFSIIIGVTLAGFWRFKWDFFSILM-PSgaplglaPLLVLIETVSYISRAISLGVRLAANLSAGHLlfailag 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 90994438  199 ------VVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:MTH00172 180 fgfnmlCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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