|
Name |
Accession |
Description |
Interval |
E-value |
| atpI |
CHL00046 |
ATP synthase CF0 A subunit |
15-240 |
4.04e-151 |
|
ATP synthase CF0 A subunit
Pssm-ID: 176987 Cd Length: 228 Bit Score: 420.11 E-value: 4.04e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 15 LSAVEVGKHLYWKIGSLQLHGQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWV 94
Cdd:CHL00046 3 ISGVEVGQHFYWQIGGFQVHGQVLITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 95 PYIATLFLFILGCNWAGALIPWKLIHLPEGELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFARYIQPTPVLLPIN 174
Cdd:CHL00046 83 PFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90994438 175 ILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGE 240
Cdd:CHL00046 163 ILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGE 228
|
|
| AtpB |
COG0356 |
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ... |
36-243 |
1.18e-57 |
|
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 440125 [Multi-domain] Cd Length: 212 Bit Score: 182.20 E-value: 1.18e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 36 QVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:COG0356 1 DTVLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIG-KKGRKFAPLLLTLFLFILVSNLLG-LIP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 116 WklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPT----PVLLPINILEDFTKPLSLSFRL 189
Cdd:COG0356 79 G---------LFPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKhlFFPPFpwlaPLMLPIEIISELARPLSLSLRL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 190 FGNVLADELVVSVFTLLIPILIPLPV--------MILGLFASSIQALIFSTLSAAYIGEAME 243
Cdd:COG0356 150 FGNMFAGHIILLLLAGLAPFLLLGVLslllpvawTAFELLVGFLQAYIFTMLTAVYISLAVE 211
|
|
| ATP-synt_A |
pfam00119 |
ATP synthase A chain; |
39-239 |
4.60e-49 |
|
ATP synthase A chain;
Pssm-ID: 459679 [Multi-domain] Cd Length: 216 Bit Score: 160.35 E-value: 4.60e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 39 IVSWLVIATLLTLSFLGTRNLQR-IPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWVPYIATLFLFILGCNWAGaLIPwk 117
Cdd:pfam00119 2 LMSLIVALILLLFLLLATRKTKKlVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLG-LIP-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 118 liHLPEGelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQP------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:pfam00119 79 --KSPGG--FTVTADINVTLALALIVFLLVHYYGIKKHGLgGYFKKLFVPpvplplVPLLLPIEIISEFARPVSLSLRLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 191 GNVLADELVVSVFTLLIPILIPLPV-------------MILGLFASSIQALIFSTLSAAYIG 239
Cdd:pfam00119 155 GNMLAGHLLLLLLAGLIFALLSAGFllgvippllgvawTLFELLVAFIQAYVFTMLTAVYIS 216
|
|
| ATP-synt_Fo_a_6 |
cd00310 |
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ... |
90-239 |
4.04e-34 |
|
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.
Pssm-ID: 349411 [Multi-domain] Cd Length: 156 Bit Score: 120.20 E-value: 4.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 90 YRPWVPYIATLFLFILGCNWAGaLIPWklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR------Y 163
Cdd:cd00310 1 GKKYLPLLGTLFLFILFSNLLG-LIPY---------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHflppgtP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 164 IQPTPVLLPINILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLP----------VMILGLFASSIQALIFSTL 233
Cdd:cd00310 71 LPLAPLMVPIELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVgllplllpvaLTLLELFVAFIQAYVFTLL 150
|
....*.
gi 90994438 234 SAAYIG 239
Cdd:cd00310 151 TAVYIS 156
|
|
| altF1_A |
TIGR03306 |
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ... |
24-241 |
7.12e-29 |
|
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.
Pssm-ID: 132349 Cd Length: 217 Bit Score: 108.29 E-value: 7.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 24 LYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPE--KFQNFMEFILEFLQDiAKNQIGEHEYRPWVPYIATLF 101
Cdd:TIGR03306 7 IYWQYGFVKINATI-AFTWLLMLLLVIGSWLITRRLSTGLErsRWQNLLEVLVTGIQE-QISDVGLAKPRKYLPFLGTLF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 102 LFILGCNWagalipwkLIHLPEGElaAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFT 180
Cdd:TIGR03306 85 LFIAVANL--------LSVIPGYE--PPTGSLSTTAALALCVFVAVPLFGIAERGLsGYLKSYLKPTPFMLPFNIIGELS 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438 181 KPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR03306 155 RTLALAVRLFGNMMSGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| atpI |
CHL00046 |
ATP synthase CF0 A subunit |
15-240 |
4.04e-151 |
|
ATP synthase CF0 A subunit
Pssm-ID: 176987 Cd Length: 228 Bit Score: 420.11 E-value: 4.04e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 15 LSAVEVGKHLYWKIGSLQLHGQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWV 94
Cdd:CHL00046 3 ISGVEVGQHFYWQIGGFQVHGQVLITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 95 PYIATLFLFILGCNWAGALIPWKLIHLPEGELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFARYIQPTPVLLPIN 174
Cdd:CHL00046 83 PFIGTMFLFIFVSNWSGALLPWKLIELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90994438 175 ILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGE 240
Cdd:CHL00046 163 ILEDFTKPLSLSFRLFGNILADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGE 228
|
|
| PRK05815 |
PRK05815 |
F0F1 ATP synthase subunit A; Validated |
20-245 |
4.77e-61 |
|
F0F1 ATP synthase subunit A; Validated
Pssm-ID: 235617 Cd Length: 227 Bit Score: 191.55 E-value: 4.77e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 20 VGKHLYWKIGSLQLHgQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEhEYRPWVPYIAT 99
Cdd:PRK05815 1 IEHHLIIGFGGFNFD-SLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGG-KGKKFAPLAFT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 100 LFLFILGCNWAGaLIPWklihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPTPVLLPINILE 177
Cdd:PRK05815 79 LFLFILLMNLLG-LIPY--------LLFPPTADINVTLALALIVFVLVIYYGIKKKGLGGYLKefYLQPHPLLLPIEIIS 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 90994438 178 DFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPV---------MILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK05815 150 EFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALaplilpvawTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
|
|
| AtpB |
COG0356 |
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ... |
36-243 |
1.18e-57 |
|
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 440125 [Multi-domain] Cd Length: 212 Bit Score: 182.20 E-value: 1.18e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 36 QVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:COG0356 1 DTVLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIG-KKGRKFAPLLLTLFLFILVSNLLG-LIP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 116 WklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR--YIQPT----PVLLPINILEDFTKPLSLSFRL 189
Cdd:COG0356 79 G---------LFPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKhlFFPPFpwlaPLMLPIEIISELARPLSLSLRL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 190 FGNVLADELVVSVFTLLIPILIPLPV--------MILGLFASSIQALIFSTLSAAYIGEAME 243
Cdd:COG0356 150 FGNMFAGHIILLLLAGLAPFLLLGVLslllpvawTAFELLVGFLQAYIFTMLTAVYISLAVE 211
|
|
| ATP-synt_A |
pfam00119 |
ATP synthase A chain; |
39-239 |
4.60e-49 |
|
ATP synthase A chain;
Pssm-ID: 459679 [Multi-domain] Cd Length: 216 Bit Score: 160.35 E-value: 4.60e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 39 IVSWLVIATLLTLSFLGTRNLQR-IPEKFQNFMEFILEFLQDIAKNQIGEHEYRPWVPYIATLFLFILGCNWAGaLIPwk 117
Cdd:pfam00119 2 LMSLIVALILLLFLLLATRKTKKlVPGRLQNFVEMLVEFVDNIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLG-LIP-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 118 liHLPEGelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQP------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:pfam00119 79 --KSPGG--FTVTADINVTLALALIVFLLVHYYGIKKHGLgGYFKKLFVPpvplplVPLLLPIEIISEFARPVSLSLRLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90994438 191 GNVLADELVVSVFTLLIPILIPLPV-------------MILGLFASSIQALIFSTLSAAYIG 239
Cdd:pfam00119 155 GNMLAGHLLLLLLAGLIFALLSAGFllgvippllgvawTLFELLVAFIQAYVFTMLTAVYIS 216
|
|
| ATP-synt_Fo_a_6 |
cd00310 |
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ... |
90-239 |
4.04e-34 |
|
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.
Pssm-ID: 349411 [Multi-domain] Cd Length: 156 Bit Score: 120.20 E-value: 4.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 90 YRPWVPYIATLFLFILGCNWAGaLIPWklihlpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLGYFAR------Y 163
Cdd:cd00310 1 GKKYLPLLGTLFLFILFSNLLG-LIPY---------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHflppgtP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 164 IQPTPVLLPINILEDFTKPLSLSFRLFGNVLADELVVSVFTLLIPILIPLP----------VMILGLFASSIQALIFSTL 233
Cdd:cd00310 71 LPLAPLMVPIELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVgllplllpvaLTLLELFVAFIQAYVFTLL 150
|
....*.
gi 90994438 234 SAAYIG 239
Cdd:cd00310 151 TAVYIS 156
|
|
| PRK13421 |
PRK13421 |
F0F1 ATP synthase subunit A; Provisional |
39-244 |
3.89e-32 |
|
F0F1 ATP synthase subunit A; Provisional
Pssm-ID: 237383 Cd Length: 223 Bit Score: 117.10 E-value: 3.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 39 IVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFL-QDIAKN-QIGEHEYRPwvpYIATLFLFILGCNWAGaLIPw 116
Cdd:PRK13421 24 VVTWAIMAVLAAGSALATRRLSLAPGRLQSVLELVVTTIdAQIRDTmQTDPAPYRA---LIGTLFLFVLVANWSS-LVP- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 117 klihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFTKPLSLSFRLFGNVLA 195
Cdd:PRK13421 99 --------GVEPPTAHLETDAALALIVFLATIYYGVRARGVrGYLATFAEPTWVMIPLNLVEQLTRTFSLIVRLFGNVMS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 90994438 196 DELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEG 244
Cdd:PRK13421 171 GVFVIGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMVFIGAAVSD 219
|
|
| PRK13420 |
PRK13420 |
F0F1 ATP synthase subunit A; Provisional |
23-245 |
2.05e-30 |
|
F0F1 ATP synthase subunit A; Provisional
Pssm-ID: 237382 [Multi-domain] Cd Length: 226 Bit Score: 112.91 E-value: 2.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 23 HLYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHeYRPWVPYIATLFL 102
Cdd:PRK13420 6 HVLFHIGPLPITESV-LTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRH-ARLVLPFVGTLWI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 103 FILGCNWAGaLIPwklihlpegELAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFTK 181
Cdd:PRK13420 84 FILVANLIG-LIP---------GFHSPTADLSVTAALALLVFFSVHWFGIRAEGLrEYLKHYLSPSPFLLPFHLISEITR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90994438 182 PLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK13420 154 TLALAVRLFGNIMSLELAALLVLLVAGFLVPVPILMLHIIEALVQAYIFGMLALIYIAGGIQAH 217
|
|
| altF1_A |
TIGR03306 |
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ... |
24-241 |
7.12e-29 |
|
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.
Pssm-ID: 132349 Cd Length: 217 Bit Score: 108.29 E-value: 7.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 24 LYWKIGSLQLHGQVfIVSWLVIATLLTLSFLGTRNLQRIPE--KFQNFMEFILEFLQDiAKNQIGEHEYRPWVPYIATLF 101
Cdd:TIGR03306 7 IYWQYGFVKINATI-AFTWLLMLLLVIGSWLITRRLSTGLErsRWQNLLEVLVTGIQE-QISDVGLAKPRKYLPFLGTLF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 102 LFILGCNWagalipwkLIHLPEGElaAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTPVLLPINILEDFT 180
Cdd:TIGR03306 85 LFIAVANL--------LSVIPGYE--PPTGSLSTTAALALCVFVAVPLFGIAERGLsGYLKSYLKPTPFMLPFNIIGELS 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438 181 KPLSLSFRLFGNVLADELVVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR03306 155 RTLALAVRLFGNMMSGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
|
|
| ATP_synt_6_or_A |
TIGR01131 |
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ... |
41-241 |
1.77e-28 |
|
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273458 Cd Length: 226 Bit Score: 107.68 E-value: 1.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 41 SWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYrPWVPYIATLFLFILGCNWAGaLIPWklih 120
Cdd:TIGR01131 19 SLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKG-KFFPLIFTLFLFILISNLLG-LIPY---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 121 lpegeLAAPTNDINTTVALSLLTSLAYFYAGLSKKGLG---YFARYIQPT---PVLLPINILEDFTKPLSLSFRLFGNVL 194
Cdd:TIGR01131 93 -----SFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGflaHLVPSGTPLpliPFLVIIETISYLARPISLSVRLFANIS 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 90994438 195 ADELVVSVFTLLIPILIPLPVM-----------ILGLFASSIQALIFSTLSAAYIGEA 241
Cdd:TIGR01131 168 AGHLLLTLLSGLLFSLMSSAIFallllilvaliILEIFVAFIQAYVFTLLTCLYLNDA 225
|
|
| PRK13419 |
PRK13419 |
F0F1 ATP synthase subunit A; Provisional |
42-248 |
1.49e-25 |
|
F0F1 ATP synthase subunit A; Provisional
Pssm-ID: 237381 Cd Length: 342 Bit Score: 102.51 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 42 WLVIATLLTLSFLGTRNLQRI-----PEKFQNFMEFILEFLQ-DIAKNQIGeHEYRPWVPYIATLFLFILGCNWAGaLIP 115
Cdd:PRK13419 114 WIASAILLVVFLAAGRKYKKMtksqaPKGLANAMEALVEFIRlDVAKSNIG-HGYEKFLPYLLTVFFFILVCNLLG-LVP 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 116 WKlihlpegelAAPTNDINTTVALSLLTSLAYFYAGLSKKGL-GYFARYIQPTP-----VLLPINILEDFTKPLSLSFRL 189
Cdd:PRK13419 192 YG---------ATATGNINVTLTLAVFTFFITQYAAIKAHGIkGYLAHLTGGTHwslwiIMIPIEFIGLFTKPFALTVRL 262
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90994438 190 FGNVLADELVV------------SVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGHGEE 248
Cdd:PRK13419 263 FANMTAGHIVIlslifisfilksYIVAVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFIGLATAHEGHD 333
|
|
| PRK13417 |
PRK13417 |
F0F1 ATP synthase subunit A; Provisional |
19-245 |
1.58e-08 |
|
F0F1 ATP synthase subunit A; Provisional
Pssm-ID: 237380 Cd Length: 352 Bit Score: 54.13 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 19 EVGKHLYWkIGSLQLH-----GQVFIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRPW 93
Cdd:PRK13417 79 ETGKRFHY-VGGFDMHitkrvTMMWIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIVDESMHGHGHSY 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 94 VPYIATLFLFILGCNWAGaLIP------------WKLIHLPEGELA--------------APTNDINTTVALSLLTSLAY 147
Cdd:PRK13417 158 YHYIFTLFFFILFCNLMG-LVPsvgeltvvasdyGGLVALGVMDHTphalptfakvwsgiTVTGDISVTMTLALLTMFLI 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 148 FYAGLSKKGLGYFARYIqPTPVLLPIN--------ILEDFTKPLSLSFRLFGNVLADELVV-----------SVFTLLIP 208
Cdd:PRK13417 237 YGAGFSYQGPKFIWHSV-PNGVPLLLYpimwplefIVSPMAKTFALTVRLLANMTAGHVIIlalmgfifqfqSWGIVPVS 315
|
250 260 270
....*....|....*....|....*....|....*..
gi 90994438 209 ILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:PRK13417 316 VIGSGLIYVLEIFVAFLQAYIFVLLTSLFVGLSMHRH 352
|
|
| ATP6 |
MTH00175 |
ATP synthase F0 subunit 6; Provisional |
38-245 |
1.32e-04 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 177228 Cd Length: 244 Bit Score: 41.92 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 38 FIVSWLVIATLLTLSFLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEhEYRPWVPYIATLFLFILGCNWAGaLIPWK 117
Cdd:MTH00175 28 FTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGK-SGQKYFPFILSLFLFIAILNILG-LFPYV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 118 LihlpegelaAPTNDINTTVALSLLTSLAYFYAGLSKKGLGyFARYIQP-------TPVLLPINILEDFTKPLSLSFRLF 190
Cdd:MTH00175 106 F---------TPTAHIIITFGLSLSIIIAVTLLGFLTFKWN-FLSILMPggaplvlAPFLVLIETLSYLIRAISLGVRLA 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90994438 191 GNVLADELVVSVFTLLIPILIPLPVMILGLFASS--------------IQALIFSTLSAAYIGEAMEGH 245
Cdd:MTH00175 176 ANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLimifitllemavavIQAYVFCLLTTIYLGDTIALH 244
|
|
| ATP6 |
MTH00172 |
ATP synthase F0 subunit 6; Provisional |
53-245 |
7.78e-04 |
|
ATP synthase F0 subunit 6; Provisional
Pssm-ID: 214447 Cd Length: 232 Bit Score: 39.64 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 53 FLGTRNLQRIPEKFQNFMEFILEFLQDIAKNQIGEHEYRpWVPYIATLFLFILGCNWAGaLIPWKLihlpegelaAPTND 132
Cdd:MTH00172 32 LLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLK-YFPFIISLFFFIVFLNLLG-LFPYVF---------TPTTH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90994438 133 INTTVALSLLTSLAYFYAGLSKKGLGYFARYIqPT-------PVLLPINILEDFTKPLSLSFRLFGNVLADEL------- 198
Cdd:MTH00172 101 IVVTLGLSFSIIIGVTLAGFWRFKWDFFSILM-PSgaplglaPLLVLIETVSYISRAISLGVRLAANLSAGHLlfailag 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 90994438 199 ------VVSVFTLLIPILIPLPVMILGLFASSIQALIFSTLSAAYIGEAMEGH 245
Cdd:MTH00172 180 fgfnmlCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
|
|
|